Iron in PDB 8zet: Tp-Psi-Fcpi-S in Thalassiosira Pseudonana

All present enzymatic activity of Tp-Psi-Fcpi-S in Thalassiosira Pseudonana:
1.97.1.12;

The structure of Tp-Psi-Fcpi-S in Thalassiosira Pseudonana also contains other interesting chemical elements:

Magnesium

(Mg)

146 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Tp-Psi-Fcpi-S in Thalassiosira Pseudonana (pdb code 8zet). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Tp-Psi-Fcpi-S in Thalassiosira Pseudonana, PDB code: 8zet:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in the Tp-Psi-Fcpi-S in Thalassiosira Pseudonana


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Tp-Psi-Fcpi-S in Thalassiosira Pseudonana within 5.0Å range: probe atom residue distance (Å) B Occ b:Fe802 b:73.8 occ:1.00 FE1 b:SF4802 0.0 73.8 1.0 SG b:CYS567 1.9 67.9 1.0 S4 b:SF4802 2.3 73.8 1.0 S3 b:SF4802 2.3 73.8 1.0 S2 b:SF4802 2.3 73.8 1.0 FE2 b:SF4802 2.7 73.8 1.0 FE3 b:SF4802 2.7 73.8 1.0 FE4 b:SF4802 2.7 73.8 1.0 CB b:CYS567 3.4 67.9 1.0 S1 b:SF4802 3.9 73.8 1.0 CA b:CYS567 3.9 67.9 1.0 CD1 a:ILE721 4.1 64.2 1.0 N b:CYS567 4.2 67.9 1.0 SG a:CYS584 4.2 67.2 1.0 CB b:CYS558 4.5 67.4 1.0 CZ3 b:TRP666 4.5 62.1 1.0 SG b:CYS558 4.5 67.4 1.0 C b:THR566 4.7 66.7 1.0 SG a:CYS575 4.9 68.9 1.0

Iron binding site 2 out of 12 in the Tp-Psi-Fcpi-S in Thalassiosira Pseudonana


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Tp-Psi-Fcpi-S in Thalassiosira Pseudonana within 5.0Å range: probe atom residue distance (Å) B Occ b:Fe802 b:73.8 occ:1.00 FE2 b:SF4802 0.0 73.8 1.0 S3 b:SF4802 2.3 73.8 1.0 S1 b:SF4802 2.3 73.8 1.0 S4 b:SF4802 2.3 73.8 1.0 FE4 b:SF4802 2.7 73.8 1.0 FE3 b:SF4802 2.7 73.8 1.0 FE1 b:SF4802 2.7 73.8 1.0 SG a:CYS584 2.8 67.2 1.0 SG a:CYS575 3.6 68.9 1.0 S2 b:SF4802 3.9 73.8 1.0 SG b:CYS558 4.0 67.4 1.0 CB a:CYS575 4.1 68.9 1.0 O a:GLY577 4.2 68.6 1.0 CB a:CYS584 4.3 67.2 1.0 C a:GLY577 4.4 68.6 1.0 SG b:CYS567 4.5 67.9 1.0 CA a:CYS584 4.6 67.2 1.0 N a:PRO578 4.7 69.1 1.0 CD1 b:ILE701 4.7 66.3 1.0 N a:CYS584 4.8 67.2 1.0 CA a:GLY577 4.9 68.6 1.0 CB b:CYS558 4.9 67.4 1.0 CA a:PRO578 4.9 69.1 1.0

Iron binding site 3 out of 12 in the Tp-Psi-Fcpi-S in Thalassiosira Pseudonana


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Tp-Psi-Fcpi-S in Thalassiosira Pseudonana within 5.0Å range: probe atom residue distance (Å) B Occ b:Fe802 b:73.8 occ:1.00 FE3 b:SF4802 0.0 73.8 1.0 S1 b:SF4802 2.3 73.8 1.0 S4 b:SF4802 2.3 73.8 1.0 S2 b:SF4802 2.3 73.8 1.0 SG a:CYS575 2.7 68.9 1.0 FE2 b:SF4802 2.7 73.8 1.0 FE1 b:SF4802 2.7 73.8 1.0 FE4 b:SF4802 2.7 73.8 1.0 CA b:PRO561 3.3 67.1 1.0 N b:PRO561 3.4 67.1 1.0 CB b:PRO561 3.5 67.1 1.0 C b:GLY560 3.6 68.0 1.0 O b:GLY560 3.7 68.0 1.0 S3 b:SF4802 3.9 73.8 1.0 CD b:PRO561 4.0 67.1 1.0 CD1 a:ILE721 4.0 64.2 1.0 CB a:CYS575 4.1 68.9 1.0 CG b:PRO561 4.3 67.1 1.0 SG b:CYS567 4.3 67.9 1.0 CA b:GLY560 4.4 68.0 1.0 SG b:CYS558 4.7 67.4 1.0 C b:PRO561 4.8 67.1 1.0 N b:GLY560 5.0 68.0 1.0

Iron binding site 4 out of 12 in the Tp-Psi-Fcpi-S in Thalassiosira Pseudonana


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Tp-Psi-Fcpi-S in Thalassiosira Pseudonana within 5.0Å range: probe atom residue distance (Å) B Occ b:Fe802 b:73.8 occ:1.00 FE4 b:SF4802 0.0 73.8 1.0 SG b:CYS558 2.1 67.4 1.0 S1 b:SF4802 2.3 73.8 1.0 S3 b:SF4802 2.3 73.8 1.0 S2 b:SF4802 2.3 73.8 1.0 FE2 b:SF4802 2.7 73.8 1.0 FE1 b:SF4802 2.7 73.8 1.0 FE3 b:SF4802 2.7 73.8 1.0 CB b:CYS558 2.7 67.4 1.0 N b:GLY560 3.5 68.0 1.0 O b:GLY560 3.7 68.0 1.0 C b:GLY560 3.7 68.0 1.0 CA b:GLY560 3.8 68.0 1.0 S4 b:SF4802 3.9 73.8 1.0 CA b:CYS558 4.2 67.4 1.0 N b:ASP559 4.2 68.5 1.0 SG b:CYS567 4.3 67.9 1.0 OG1 b:THR566 4.4 66.7 1.0 N b:PRO561 4.4 67.1 1.0 O b:THR566 4.4 66.7 1.0 C b:CYS558 4.5 67.4 1.0 C b:THR566 4.6 66.7 1.0 C b:ASP559 4.7 68.5 1.0 N b:CYS567 4.8 67.9 1.0 CA b:CYS567 4.9 67.9 1.0 CD a:PRO578 4.9 69.1 1.0 N b:CYS558 4.9 67.4 1.0 CB a:PRO578 5.0 69.1 1.0 SG a:CYS575 5.0 68.9 1.0 N a:PRO578 5.0 69.1 1.0

Iron binding site 5 out of 12 in the Tp-Psi-Fcpi-S in Thalassiosira Pseudonana


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Tp-Psi-Fcpi-S in Thalassiosira Pseudonana within 5.0Å range: probe atom residue distance (Å) B Occ c:Fe101 b:78.5 occ:1.00 FE1 c:SF4101 0.0 78.5 1.0 SG c:CYS51 1.9 71.0 1.0 S3 c:SF4101 2.3 78.5 1.0 S4 c:SF4101 2.3 78.5 1.0 S2 c:SF4101 2.3 78.5 1.0 FE2 c:SF4101 2.7 78.5 1.0 FE3 c:SF4101 2.7 78.5 1.0 FE4 c:SF4101 2.7 78.5 1.0 CB c:CYS51 3.5 71.0 1.0 CD c:PRO22 3.6 75.0 1.0 N c:CYS51 3.6 71.0 1.0 N c:LYS52 3.8 70.4 1.0 S1 c:SF4101 3.9 78.5 1.0 CA c:CYS51 4.0 71.0 1.0 CG c:PRO22 4.2 75.0 1.0 SG c:CYS48 4.2 77.5 1.0 CG2 c:VAL49 4.3 73.2 1.0 C c:CYS51 4.4 71.0 1.0 SG c:CYS21 4.4 74.3 1.0 N c:ARG53 4.5 72.0 1.0 N c:GLY50 4.5 71.6 1.0 SG c:CYS54 4.6 30.0 1.0 C c:GLY50 4.6 71.6 1.0 CA c:LYS52 4.8 70.4 1.0 N c:VAL49 4.8 73.2 1.0 CA c:GLY50 4.9 71.6 1.0 N c:PRO22 5.0 75.0 1.0 CA c:CYS21 5.0 74.3 1.0

Iron binding site 6 out of 12 in the Tp-Psi-Fcpi-S in Thalassiosira Pseudonana


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Tp-Psi-Fcpi-S in Thalassiosira Pseudonana within 5.0Å range: probe atom residue distance (Å) B Occ c:Fe101 b:78.5 occ:1.00 FE2 c:SF4101 0.0 78.5 1.0 SG c:CYS21 2.1 74.3 1.0 S3 c:SF4101 2.3 78.5 1.0 S4 c:SF4101 2.3 78.5 1.0 S1 c:SF4101 2.3 78.5 1.0 FE3 c:SF4101 2.7 78.5 1.0 FE1 c:SF4101 2.7 78.5 1.0 FE4 c:SF4101 2.7 78.5 1.0 CB c:CYS21 3.0 74.3 1.0 CA c:CYS21 3.6 74.3 1.0 CD c:PRO22 3.8 75.0 1.0 S2 c:SF4101 3.9 78.5 1.0 CB c:VAL25 4.2 78.6 1.0 SG c:CYS51 4.3 71.0 1.0 CG2 c:VAL25 4.4 78.6 1.0 N c:PRO22 4.4 75.0 1.0 OG1 c:THR23 4.4 77.0 1.0 C c:CYS21 4.4 74.3 1.0 SG c:CYS48 4.6 77.5 1.0 SG c:CYS54 4.8 30.0 1.0 N c:CYS21 4.8 74.3 1.0 CD1 c:LEU26 4.8 78.0 1.0 CG c:PRO22 4.8 75.0 1.0 CG c:LEU26 4.8 78.0 1.0 N c:VAL25 4.9 78.6 1.0 N c:THR23 5.0 77.0 1.0

Iron binding site 7 out of 12 in the Tp-Psi-Fcpi-S in Thalassiosira Pseudonana


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Tp-Psi-Fcpi-S in Thalassiosira Pseudonana within 5.0Å range: probe atom residue distance (Å) B Occ c:Fe101 b:78.5 occ:1.00 FE3 c:SF4101 0.0 78.5 1.0 SG c:CYS54 2.2 30.0 1.0 S1 c:SF4101 2.3 78.5 1.0 S2 c:SF4101 2.3 78.5 1.0 S4 c:SF4101 2.3 78.5 1.0 FE2 c:SF4101 2.7 78.5 1.0 FE1 c:SF4101 2.7 78.5 1.0 FE4 c:SF4101 2.7 78.5 1.0 CB c:CYS54 3.1 30.0 1.0 S3 c:SF4101 3.9 78.5 1.0 N c:CYS54 3.9 30.0 1.0 CG2 c:VAL67 4.1 72.5 1.0 CA c:CYS54 4.2 30.0 1.0 SG c:CYS51 4.2 71.0 1.0 SG c:CYS48 4.5 77.5 1.0 N c:LYS52 4.5 70.4 1.0 CD1 c:LEU26 4.6 78.0 1.0 N c:ARG53 4.7 72.0 1.0 SG c:CYS21 4.7 74.3 1.0 CA c:LYS52 4.7 70.4 1.0 C c:LYS52 5.0 70.4 1.0

Iron binding site 8 out of 12 in the Tp-Psi-Fcpi-S in Thalassiosira Pseudonana


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Tp-Psi-Fcpi-S in Thalassiosira Pseudonana within 5.0Å range: probe atom residue distance (Å) B Occ c:Fe101 b:78.5 occ:1.00 FE4 c:SF4101 0.0 78.5 1.0 SG c:CYS48 1.9 77.5 1.0 S3 c:SF4101 2.3 78.5 1.0 S2 c:SF4101 2.3 78.5 1.0 S1 c:SF4101 2.3 78.5 1.0 FE2 c:SF4101 2.7 78.5 1.0 FE3 c:SF4101 2.7 78.5 1.0 FE1 c:SF4101 2.7 78.5 1.0 CB c:CYS48 3.3 77.5 1.0 CA c:CYS48 3.8 77.5 1.0 S4 c:SF4101 3.9 78.5 1.0 N c:VAL49 4.3 73.2 1.0 N c:GLY50 4.4 71.6 1.0 CG2 c:VAL5 4.5 74.3 1.0 C c:CYS48 4.5 77.5 1.0 SG c:CYS21 4.5 74.3 1.0 SG c:CYS51 4.5 71.0 1.0 CG2 c:VAL25 4.6 78.6 1.0 SG c:CYS54 4.7 30.0 1.0 CB c:VAL25 4.7 78.6 1.0 CG2 c:VAL67 4.8 72.5 1.0 CG1 c:VAL25 4.9 78.6 1.0 CA c:GLY50 4.9 71.6 1.0

Iron binding site 9 out of 12 in the Tp-Psi-Fcpi-S in Thalassiosira Pseudonana


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Tp-Psi-Fcpi-S in Thalassiosira Pseudonana within 5.0Å range: probe atom residue distance (Å) B Occ c:Fe102 b:84.0 occ:1.00 FE1 c:SF4102 0.0 84.0 1.0 SG c:CYS58 2.2 74.8 1.0 S3 c:SF4102 2.3 84.0 1.0 S4 c:SF4102 2.3 84.0 1.0 S2 c:SF4102 2.3 84.0 1.0 FE4 c:SF4102 2.7 84.0 1.0 FE2 c:SF4102 2.7 84.0 1.0 FE3 c:SF4102 2.7 84.0 1.0 CB c:CYS58 3.3 74.8 1.0 CD c:PRO59 3.5 74.1 1.0 CA c:CYS58 3.6 74.8 1.0 S1 c:SF4102 3.9 84.0 1.0 SG c:CYS14 4.1 78.9 1.0 CB c:SER64 4.2 73.7 1.0 N c:PRO59 4.3 74.1 1.0 CG1 c:VAL65 4.4 74.3 1.0 C c:CYS58 4.5 74.8 1.0 OG c:SER64 4.6 73.7 1.0 SG c:CYS17 4.6 78.0 1.0 SG c:CYS11 4.7 78.8 1.0 CG c:PRO59 4.7 74.1 1.0 CG2 c:THR60 4.7 75.7 1.0 N c:CYS58 4.7 74.8 1.0 N c:SER64 4.8 73.7 1.0 OG1 c:THR60 4.8 75.7 1.0 N c:VAL65 4.9 74.3 1.0 CA c:SER64 5.0 73.7 1.0

Iron binding site 10 out of 12 in the Tp-Psi-Fcpi-S in Thalassiosira Pseudonana


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Tp-Psi-Fcpi-S in Thalassiosira Pseudonana within 5.0Å range: probe atom residue distance (Å) B Occ c:Fe102 b:84.0 occ:1.00 FE2 c:SF4102 0.0 84.0 1.0 SG c:CYS17 2.0 78.0 1.0 S4 c:SF4102 2.3 84.0 1.0 S1 c:SF4102 2.3 84.0 1.0 S3 c:SF4102 2.3 84.0 1.0 FE4 c:SF4102 2.7 84.0 1.0 FE3 c:SF4102 2.7 84.0 1.0 FE1 c:SF4102 2.7 84.0 1.0 CB c:CYS17 3.2 78.0 1.0 N c:CYS17 3.9 78.0 1.0 S2 c:SF4102 3.9 84.0 1.0 SG c:CYS14 4.0 78.9 1.0 CA c:CYS17 4.2 78.0 1.0 SG c:CYS11 4.3 78.8 1.0 CB c:ALA40 4.6 78.3 1.0 N c:GLN16 4.7 78.3 1.0 SG c:CYS58 4.8 74.8 1.0 N c:THR15 4.8 78.5 1.0 CG1 c:VAL65 4.9 74.3 1.0

Y.Feng, Z.Li, Y.Yang, L.Shen, X.Li, X.Liu, X.Zhang, J.Zhang, F.Ren, Y.Wang, C.Liu, G.Han, X.Wang, T.Kuang, J.R.Shen, W.Wang. Structures of Psi-Fcpi From Thalassiosira Pseudonana Grown Under High Light Provide Evidence For Convergent Evolution and Light-Adaptive Strategies in Diatom Fcpis. J Integr Plant Biol 2024.
ISSN: ESSN 1744-7909
PubMed: 39670505
DOI: 10.1111/JIPB.13816