Iron in PDB 9b8r: Cryo-Em Structure of S. Cerevisiae Pole-Core-Dna

Enzymatic activity of Cryo-Em Structure of S. Cerevisiae Pole-Core-Dna

All present enzymatic activity of Cryo-Em Structure of S. Cerevisiae Pole-Core-Dna:
2.7.7.7;

Iron Binding Sites:

The binding sites of Iron atom in the Cryo-Em Structure of S. Cerevisiae Pole-Core-Dna (pdb code 9b8r). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Cryo-Em Structure of S. Cerevisiae Pole-Core-Dna, PDB code: 9b8r:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 9b8r

Go back to Iron Binding Sites List in 9b8r
Iron binding site 1 out of 4 in the Cryo-Em Structure of S. Cerevisiae Pole-Core-Dna


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of S. Cerevisiae Pole-Core-Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe1401

b:153.8
occ:1.00
 FE1 E:SF41401 0.0 153.8 1.0
S2 E:SF41401 2.2 153.8 1.0
S4 E:SF41401 2.3 153.8 1.0
S3 E:SF41401 2.3 153.8 1.0
SG E:CYS665 2.4 81.5 1.0
FE3 E:SF41401 2.7 153.8 1.0
FE4 E:SF41401 2.7 153.8 1.0
FE2 E:SF41401 2.7 153.8 1.0
O E:CYS665 3.2 81.5 1.0
CA E:CYS665 3.3 81.5 1.0
CB E:CYS665 3.4 81.5 1.0
C E:CYS665 3.7 81.5 1.0
S1 E:SF41401 3.9 153.8 1.0
CB E:CYS668 3.9 78.8 1.0
CB E:ASN671 4.2 74.1 1.0
SG E:CYS668 4.3 78.8 1.0
ND2 E:ASN671 4.4 74.1 1.0
NZ E:LYS675 4.5 74.1 1.0
CG E:ASN671 4.5 74.1 1.0
N E:CYS665 4.6 81.5 1.0
CA E:ASN671 4.8 74.1 1.0
SG E:CYS677 4.8 87.5 1.0
O E:ASP664 4.9 77.8 1.0
CD E:LYS675 5.0 74.1 1.0
N E:ASN671 5.0 74.1 1.0

Iron binding site 2 out of 4 in 9b8r

Go back to Iron Binding Sites List in 9b8r
Iron binding site 2 out of 4 in the Cryo-Em Structure of S. Cerevisiae Pole-Core-Dna


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of S. Cerevisiae Pole-Core-Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe1401

b:153.8
occ:1.00
 FE2 E:SF41401 0.0 153.8 1.0
S3 E:SF41401 2.3 153.8 1.0
S1 E:SF41401 2.3 153.8 1.0
S4 E:SF41401 2.3 153.8 1.0
SG E:CYS677 2.4 87.5 1.0
FE4 E:SF41401 2.7 153.8 1.0
FE3 E:SF41401 2.7 153.8 1.0
FE1 E:SF41401 2.7 153.8 1.0
S2 E:SF41401 3.8 153.8 1.0
CB E:CYS677 4.0 87.5 1.0
CB E:PHE670 4.1 76.0 1.0
O E:PHE670 4.2 76.0 1.0
C E:PHE670 4.3 76.0 1.0
SG E:CYS668 4.3 78.8 1.0
N E:ASN671 4.5 74.1 1.0
CA E:PHE670 4.7 76.0 1.0
C E:CYS677 4.8 87.5 1.0
CA E:ASN671 4.8 74.1 1.0
SG E:CYS665 4.8 81.5 1.0
SG E:CYS763 4.8 94.9 1.0
O E:CYS677 4.9 87.5 1.0
CD E:LYS675 4.9 74.1 1.0
CB E:ARG765 4.9 136.9 1.0
CB E:CYS668 4.9 78.8 1.0
CA E:CYS677 4.9 87.5 1.0
CB E:ASN671 5.0 74.1 1.0
N E:ALA678 5.0 89.8 1.0

Iron binding site 3 out of 4 in 9b8r

Go back to Iron Binding Sites List in 9b8r
Iron binding site 3 out of 4 in the Cryo-Em Structure of S. Cerevisiae Pole-Core-Dna


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of S. Cerevisiae Pole-Core-Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe1401

b:153.8
occ:1.00
 FE3 E:SF41401 0.0 153.8 1.0
S2 E:SF41401 2.3 153.8 1.0
S4 E:SF41401 2.3 153.8 1.0
S1 E:SF41401 2.3 153.8 1.0
FE4 E:SF41401 2.7 153.8 1.0
FE1 E:SF41401 2.7 153.8 1.0
FE2 E:SF41401 2.7 153.8 1.0
SG E:CYS763 2.8 94.9 1.0
CB E:CYS763 3.4 94.9 1.0
S3 E:SF41401 3.8 153.8 1.0
CA E:CYS763 4.0 94.9 1.0
SG E:CYS677 4.3 87.5 1.0
SG E:CYS665 4.4 81.5 1.0
SG E:CYS668 4.6 78.8 1.0
O E:CYS677 4.7 87.5 1.0
CB E:CYS668 5.0 78.8 1.0

Iron binding site 4 out of 4 in 9b8r

Go back to Iron Binding Sites List in 9b8r
Iron binding site 4 out of 4 in the Cryo-Em Structure of S. Cerevisiae Pole-Core-Dna


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of S. Cerevisiae Pole-Core-Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe1401

b:153.8
occ:1.00
 FE4 E:SF41401 0.0 153.8 1.0
SG E:CYS668 2.0 78.8 1.0
S3 E:SF41401 2.2 153.8 1.0
S1 E:SF41401 2.3 153.8 1.0
S2 E:SF41401 2.3 153.8 1.0
CB E:CYS668 2.6 78.8 1.0
FE3 E:SF41401 2.7 153.8 1.0
FE2 E:SF41401 2.7 153.8 1.0
FE1 E:SF41401 2.7 153.8 1.0
S4 E:SF41401 3.8 153.8 1.0
CA E:CYS668 4.0 78.8 1.0
CB E:PHE670 4.3 76.0 1.0
O E:CYS665 4.5 81.5 1.0
C E:CYS668 4.5 78.8 1.0
SG E:CYS763 4.6 94.9 1.0
O E:CYS668 4.7 78.8 1.0
N E:PHE670 4.8 76.0 1.0
N E:ASN671 4.8 74.1 1.0
CD2 E:PHE670 4.8 76.0 1.0
CA E:PHE670 4.9 76.0 1.0
C E:PHE670 4.9 76.0 1.0
CA E:CYS665 4.9 81.5 1.0
N E:CYS668 4.9 78.8 1.0
SG E:CYS677 5.0 87.5 1.0

Reference:

Z.Yuan, R.Georgescu, N.Y.Yao, O.Yurieva, M.E.O'donnell, H.Li. Mechanism of Pcna Loading By CTF18-Rfc For Leading-Strand Dna Synthesis Science V. 385 2024.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ADK5901
Page generated: Thu Oct 31 20:52:17 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy