Iron in PDB 9b8r: Cryo-Em Structure of S. Cerevisiae Pole-Core-Dna

Enzymatic activity of Cryo-Em Structure of S. Cerevisiae Pole-Core-Dna

All present enzymatic activity of Cryo-Em Structure of S. Cerevisiae Pole-Core-Dna:
2.7.7.7;

Iron Binding Sites:

The binding sites of Iron atom in the Cryo-Em Structure of S. Cerevisiae Pole-Core-Dna (pdb code 9b8r). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Cryo-Em Structure of S. Cerevisiae Pole-Core-Dna, PDB code: 9b8r:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 9b8r

Go back to Iron Binding Sites List in 9b8r
Iron binding site 1 out of 4 in the Cryo-Em Structure of S. Cerevisiae Pole-Core-Dna


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of S. Cerevisiae Pole-Core-Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe1401

b:153.8
occ:1.00
 FE1 E:SF41401 0.0 153.8 1.0
S2 E:SF41401 2.2 153.8 1.0
S4 E:SF41401 2.3 153.8 1.0
S3 E:SF41401 2.3 153.8 1.0
SG E:CYS665 2.4 81.5 1.0
FE3 E:SF41401 2.7 153.8 1.0
FE4 E:SF41401 2.7 153.8 1.0
FE2 E:SF41401 2.7 153.8 1.0
O E:CYS665 3.2 81.5 1.0
CA E:CYS665 3.3 81.5 1.0
CB E:CYS665 3.4 81.5 1.0
C E:CYS665 3.7 81.5 1.0
S1 E:SF41401 3.9 153.8 1.0
CB E:CYS668 3.9 78.8 1.0
CB E:ASN671 4.2 74.1 1.0
SG E:CYS668 4.3 78.8 1.0
ND2 E:ASN671 4.4 74.1 1.0
NZ E:LYS675 4.5 74.1 1.0
CG E:ASN671 4.5 74.1 1.0
N E:CYS665 4.6 81.5 1.0
CA E:ASN671 4.8 74.1 1.0
SG E:CYS677 4.8 87.5 1.0
O E:ASP664 4.9 77.8 1.0
CD E:LYS675 5.0 74.1 1.0
N E:ASN671 5.0 74.1 1.0

Iron binding site 2 out of 4 in 9b8r

Go back to Iron Binding Sites List in 9b8r
Iron binding site 2 out of 4 in the Cryo-Em Structure of S. Cerevisiae Pole-Core-Dna


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of S. Cerevisiae Pole-Core-Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe1401

b:153.8
occ:1.00
 FE2 E:SF41401 0.0 153.8 1.0
S3 E:SF41401 2.3 153.8 1.0
S1 E:SF41401 2.3 153.8 1.0
S4 E:SF41401 2.3 153.8 1.0
SG E:CYS677 2.4 87.5 1.0
FE4 E:SF41401 2.7 153.8 1.0
FE3 E:SF41401 2.7 153.8 1.0
FE1 E:SF41401 2.7 153.8 1.0
S2 E:SF41401 3.8 153.8 1.0
CB E:CYS677 4.0 87.5 1.0
CB E:PHE670 4.1 76.0 1.0
O E:PHE670 4.2 76.0 1.0
C E:PHE670 4.3 76.0 1.0
SG E:CYS668 4.3 78.8 1.0
N E:ASN671 4.5 74.1 1.0
CA E:PHE670 4.7 76.0 1.0
C E:CYS677 4.8 87.5 1.0
CA E:ASN671 4.8 74.1 1.0
SG E:CYS665 4.8 81.5 1.0
SG E:CYS763 4.8 94.9 1.0
O E:CYS677 4.9 87.5 1.0
CD E:LYS675 4.9 74.1 1.0
CB E:ARG765 4.9 136.9 1.0
CB E:CYS668 4.9 78.8 1.0
CA E:CYS677 4.9 87.5 1.0
CB E:ASN671 5.0 74.1 1.0
N E:ALA678 5.0 89.8 1.0

Iron binding site 3 out of 4 in 9b8r

Go back to Iron Binding Sites List in 9b8r
Iron binding site 3 out of 4 in the Cryo-Em Structure of S. Cerevisiae Pole-Core-Dna


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of S. Cerevisiae Pole-Core-Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe1401

b:153.8
occ:1.00
 FE3 E:SF41401 0.0 153.8 1.0
S2 E:SF41401 2.3 153.8 1.0
S4 E:SF41401 2.3 153.8 1.0
S1 E:SF41401 2.3 153.8 1.0
FE4 E:SF41401 2.7 153.8 1.0
FE1 E:SF41401 2.7 153.8 1.0
FE2 E:SF41401 2.7 153.8 1.0
SG E:CYS763 2.8 94.9 1.0
CB E:CYS763 3.4 94.9 1.0
S3 E:SF41401 3.8 153.8 1.0
CA E:CYS763 4.0 94.9 1.0
SG E:CYS677 4.3 87.5 1.0
SG E:CYS665 4.4 81.5 1.0
SG E:CYS668 4.6 78.8 1.0
O E:CYS677 4.7 87.5 1.0
CB E:CYS668 5.0 78.8 1.0

Iron binding site 4 out of 4 in 9b8r

Go back to Iron Binding Sites List in 9b8r
Iron binding site 4 out of 4 in the Cryo-Em Structure of S. Cerevisiae Pole-Core-Dna


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of S. Cerevisiae Pole-Core-Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe1401

b:153.8
occ:1.00
 FE4 E:SF41401 0.0 153.8 1.0
SG E:CYS668 2.0 78.8 1.0
S3 E:SF41401 2.2 153.8 1.0
S1 E:SF41401 2.3 153.8 1.0
S2 E:SF41401 2.3 153.8 1.0
CB E:CYS668 2.6 78.8 1.0
FE3 E:SF41401 2.7 153.8 1.0
FE2 E:SF41401 2.7 153.8 1.0
FE1 E:SF41401 2.7 153.8 1.0
S4 E:SF41401 3.8 153.8 1.0
CA E:CYS668 4.0 78.8 1.0
CB E:PHE670 4.3 76.0 1.0
O E:CYS665 4.5 81.5 1.0
C E:CYS668 4.5 78.8 1.0
SG E:CYS763 4.6 94.9 1.0
O E:CYS668 4.7 78.8 1.0
N E:PHE670 4.8 76.0 1.0
N E:ASN671 4.8 74.1 1.0
CD2 E:PHE670 4.8 76.0 1.0
CA E:PHE670 4.9 76.0 1.0
C E:PHE670 4.9 76.0 1.0
CA E:CYS665 4.9 81.5 1.0
N E:CYS668 4.9 78.8 1.0
SG E:CYS677 5.0 87.5 1.0

Reference:

Z.Yuan, R.Georgescu, N.Y.Yao, O.Yurieva, M.E.O'donnell, H.Li. Mechanism of Pcna Loading By CTF18-Rfc For Leading-Strand Dna Synthesis Science V. 385 2024.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ADK5901
Page generated: Thu Oct 31 20:52:17 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy