Iron in PDB 9c8m: High-Resolution Structure of Cytochrome C Peroxidase From Yeast Under Cryogenic Conditions and Ambient Pressure

Enzymatic activity of High-Resolution Structure of Cytochrome C Peroxidase From Yeast Under Cryogenic Conditions and Ambient Pressure

All present enzymatic activity of High-Resolution Structure of Cytochrome C Peroxidase From Yeast Under Cryogenic Conditions and Ambient Pressure:
1.11.1.5;

Protein crystallography data

The structure of High-Resolution Structure of Cytochrome C Peroxidase From Yeast Under Cryogenic Conditions and Ambient Pressure, PDB code: 9c8m was solved by R.K.Zawistowski, B.R.Crane, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.34 / 1.78
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.605, 72.888, 100.378, 90, 90, 90
R / Rfree (%) 17.3 / 21.3

Iron Binding Sites:

The binding sites of Iron atom in the High-Resolution Structure of Cytochrome C Peroxidase From Yeast Under Cryogenic Conditions and Ambient Pressure (pdb code 9c8m). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the High-Resolution Structure of Cytochrome C Peroxidase From Yeast Under Cryogenic Conditions and Ambient Pressure, PDB code: 9c8m:

Iron binding site 1 out of 1 in 9c8m

Go back to Iron Binding Sites List in 9c8m
Iron binding site 1 out of 1 in the High-Resolution Structure of Cytochrome C Peroxidase From Yeast Under Cryogenic Conditions and Ambient Pressure


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of High-Resolution Structure of Cytochrome C Peroxidase From Yeast Under Cryogenic Conditions and Ambient Pressure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe301

b:15.4
occ:1.00
 FE A:HEM301 0.0 15.4 1.0
NB A:HEM301 2.0 18.2 1.0
NC A:HEM301 2.1 13.3 1.0
NA A:HEM301 2.1 16.3 1.0
ND A:HEM301 2.1 15.6 1.0
NE2 A:HIS175 2.1 15.6 1.0
O A:HOH518 2.6 33.5 1.0
C4B A:HEM301 3.1 16.4 1.0
C1D A:HEM301 3.1 15.7 1.0
C1B A:HEM301 3.1 17.3 1.0
C1C A:HEM301 3.1 13.5 1.0
C4A A:HEM301 3.1 18.5 1.0
C4D A:HEM301 3.1 15.0 1.0
C4C A:HEM301 3.1 13.4 1.0
C1A A:HEM301 3.1 21.0 1.0
CE1 A:HIS175 3.1 17.4 1.0
CD2 A:HIS175 3.1 14.9 1.0
CHC A:HEM301 3.4 18.1 1.0
CHB A:HEM301 3.4 19.7 1.0
CHD A:HEM301 3.5 15.3 1.0
CHA A:HEM301 3.5 14.7 1.0
NE1 A:TRP51 4.0 18.8 1.0
ND1 A:HIS175 4.2 16.6 1.0
C2D A:HEM301 4.3 14.7 1.0
CG A:HIS175 4.3 15.3 1.0
C3D A:HEM301 4.3 13.5 1.0
C3B A:HEM301 4.3 15.0 1.0
C2B A:HEM301 4.3 18.1 1.0
C3A A:HEM301 4.3 16.1 1.0
C2C A:HEM301 4.3 17.1 1.0
C3C A:HEM301 4.3 18.3 1.0
C2A A:HEM301 4.3 16.4 1.0
O A:HOH545 4.4 26.1 1.0
CD1 A:TRP51 4.5 16.6 1.0
O A:HOH453 4.9 33.6 1.0

Reference:

R.K.Zawistowski, B.R.Crane. Differential Responses in the Core, Active Site and Peripheral Regions of Cytochrome C Peroxidase to Extreme Pressure and Temperature. J.Mol.Biol. 68799 2024.
ISSN: ESSN 1089-8638
PubMed: 39332669
DOI: 10.1016/J.JMB.2024.168799
Page generated: Thu Oct 31 21:02:03 2024

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