Iron in PDB 9c8v: Human Dna Polymerase Alpha/Primase - Chapso (4 Mm)

All present enzymatic activity of Human Dna Polymerase Alpha/Primase - Chapso (4 Mm):
2.7.7.102; 2.7.7.7;

The structure of Human Dna Polymerase Alpha/Primase - Chapso (4 Mm) also contains other interesting chemical elements:

Zinc

(Zn)

3 atoms

The binding sites of Iron atom in the Human Dna Polymerase Alpha/Primase - Chapso (4 Mm) (pdb code 9c8v). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Human Dna Polymerase Alpha/Primase - Chapso (4 Mm), PDB code: 9c8v:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Human Dna Polymerase Alpha/Primase - Chapso (4 Mm)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Human Dna Polymerase Alpha/Primase - Chapso (4 Mm) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe601 b:0.7 occ:1.00 FE1 B:SF4601 0.0 0.7 1.0 SG B:CYS367 2.3 0.8 1.0 S4 B:SF4601 2.3 6.9 1.0 S3 B:SF4601 2.3 6.3 1.0 S2 B:SF4601 2.3 5.7 1.0 FE3 B:SF4601 2.7 11.6 1.0 FE2 B:SF4601 2.7 11.2 1.0 FE4 B:SF4601 2.7 2.6 1.0 CB B:CYS367 3.8 0.9 1.0 S1 B:SF4601 3.9 18.1 1.0 CA B:CYS367 4.3 0.5 1.0 CD1 B:LEU441 4.5 5.3 1.0 CG B:PRO444 4.6 1.4 1.0 SG B:CYS424 4.7 5.2 1.0 SG B:CYS384 4.8 4.7 1.0 SG B:CYS287 4.8 3.4 1.0 CD B:PRO444 5.0 1.7 1.0

Iron binding site 2 out of 4 in the Human Dna Polymerase Alpha/Primase - Chapso (4 Mm)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Human Dna Polymerase Alpha/Primase - Chapso (4 Mm) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe601 b:11.2 occ:1.00 FE2 B:SF4601 0.0 11.2 1.0 SG B:CYS384 2.3 4.7 1.0 S3 B:SF4601 2.3 6.3 1.0 S1 B:SF4601 2.3 18.1 1.0 S4 B:SF4601 2.3 6.9 1.0 FE4 B:SF4601 2.7 2.6 1.0 FE1 B:SF4601 2.7 0.7 1.0 FE3 B:SF4601 2.7 11.6 1.0 CB B:CYS384 3.4 2.9 1.0 S2 B:SF4601 3.9 5.7 1.0 CA B:CYS384 4.1 2.8 1.0 CD2 B:PHE386 4.2 4.8 1.0 CD B:PRO385 4.5 5.5 1.0 SG B:CYS287 4.7 3.4 1.0 CE2 B:PHE386 4.7 7.1 1.0 SG B:CYS367 4.7 0.8 1.0 C B:CYS384 4.8 3.7 1.0 SG B:CYS424 4.8 5.2 1.0 N B:PRO385 4.9 2.9 1.0

Iron binding site 3 out of 4 in the Human Dna Polymerase Alpha/Primase - Chapso (4 Mm)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Human Dna Polymerase Alpha/Primase - Chapso (4 Mm) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe601 b:11.6 occ:1.00 FE3 B:SF4601 0.0 11.6 1.0 SG B:CYS424 2.3 5.2 1.0 S2 B:SF4601 2.3 5.7 1.0 S4 B:SF4601 2.3 6.9 1.0 S1 B:SF4601 2.3 18.1 1.0 FE1 B:SF4601 2.7 0.7 1.0 FE4 B:SF4601 2.7 2.6 1.0 FE2 B:SF4601 2.7 11.2 1.0 CB B:CYS424 3.1 7.9 1.0 S3 B:SF4601 3.9 6.3 1.0 CE2 B:PHE386 4.3 7.1 1.0 CA B:CYS424 4.5 9.1 1.0 CD2 B:PHE386 4.5 4.8 1.0 CD B:PRO286 4.6 6.1 1.0 SG B:CYS367 4.7 0.8 1.0 SG B:CYS287 4.8 3.4 1.0 SG B:CYS384 4.8 4.7 1.0 CD1 B:LEU441 4.8 5.3 1.0 CB B:PRO285 4.8 4.4 1.0

Iron binding site 4 out of 4 in the Human Dna Polymerase Alpha/Primase - Chapso (4 Mm)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Human Dna Polymerase Alpha/Primase - Chapso (4 Mm) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe601 b:2.6 occ:1.00 FE4 B:SF4601 0.0 2.6 1.0 SG B:CYS287 2.3 3.4 1.0 S2 B:SF4601 2.3 5.7 1.0 S3 B:SF4601 2.3 6.3 1.0 S1 B:SF4601 2.3 18.1 1.0 FE2 B:SF4601 2.7 11.2 1.0 FE1 B:SF4601 2.7 0.7 1.0 FE3 B:SF4601 2.7 11.6 1.0 CB B:CYS287 3.7 5.3 1.0 S4 B:SF4601 3.9 6.9 1.0 N B:CYS287 4.3 9.0 1.0 CB B:PRO285 4.4 4.4 1.0 SG B:CYS384 4.6 4.7 1.0 CA B:CYS287 4.6 7.2 1.0 CG B:PRO444 4.7 1.4 1.0 CD B:PRO385 4.8 5.5 1.0 SG B:CYS424 4.8 5.2 1.0 SG B:CYS367 4.8 0.8 1.0 CG B:PRO285 4.9 4.1 1.0 CD B:PRO286 5.0 6.1 1.0

K.M.Abe, G.Li, Q.He, T.Grant, C.Lim. Human Dna Polymerase Alpha/Primase - Chapso (4 Mm) To Be Published.