Iron in PDB 9cdr: Dosp Apo Straight Form

All present enzymatic activity of Dosp Apo Straight Form:
3.1.4.52;

The binding sites of Iron atom in the Dosp Apo Straight Form (pdb code 9cdr). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Dosp Apo Straight Form, PDB code: 9cdr:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Dosp Apo Straight Form


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Dosp Apo Straight Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe901 b:168.0 occ:1.00 FE A:HEM901 0.0 168.0 1.0 ND A:HEM901 2.0 168.0 1.0 NB A:HEM901 2.0 168.0 1.0 NA A:HEM901 2.1 168.0 1.0 NC A:HEM901 2.1 168.0 1.0 NE2 A:HIS77 2.8 169.1 1.0 O1 A:OXY902 2.8 168.9 1.0 C1C A:HEM901 3.0 168.0 1.0 C4B A:HEM901 3.1 168.0 1.0 C1D A:HEM901 3.1 168.0 1.0 C4C A:HEM901 3.1 168.0 1.0 C4D A:HEM901 3.1 168.0 1.0 C1B A:HEM901 3.1 168.0 1.0 C4A A:HEM901 3.1 168.0 1.0 C1A A:HEM901 3.1 168.0 1.0 O2 A:OXY902 3.3 168.9 1.0 CHD A:HEM901 3.4 168.0 1.0 CHC A:HEM901 3.4 168.0 1.0 CHA A:HEM901 3.4 168.0 1.0 CHB A:HEM901 3.4 168.0 1.0 CE1 A:HIS77 3.6 169.1 1.0 CD2 A:HIS77 3.7 169.1 1.0 HE1 A:HIS77 3.8 169.1 1.0 HD2 A:HIS77 3.8 169.1 1.0 HH12 A:ARG97 3.8 165.7 1.0 C2C A:HEM901 4.2 168.0 1.0 C3C A:HEM901 4.2 168.0 1.0 C3B A:HEM901 4.3 168.0 1.0 C2B A:HEM901 4.3 168.0 1.0 C2D A:HEM901 4.3 168.0 1.0 C3A A:HEM901 4.3 168.0 1.0 C3D A:HEM901 4.3 168.0 1.0 C2A A:HEM901 4.3 168.0 1.0 NH1 A:ARG97 4.3 165.7 1.0 HD13 A:ILE69 4.3 168.2 1.0 HHD A:HEM901 4.3 168.0 1.0 HH11 A:ARG97 4.3 165.7 1.0 HHC A:HEM901 4.4 168.0 1.0 HHA A:HEM901 4.4 168.0 1.0 HHB A:HEM901 4.4 168.0 1.0 HE2 A:PHE113 4.5 162.1 1.0 HD12 A:ILE69 4.5 168.2 1.0 ND1 A:HIS77 4.7 169.1 1.0 CG A:HIS77 4.8 169.1 1.0 CD1 A:ILE69 4.9 168.2 1.0

Iron binding site 2 out of 2 in the Dosp Apo Straight Form


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Dosp Apo Straight Form within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe901 b:169.9 occ:1.00 FE B:HEM901 0.0 169.9 1.0 NB B:HEM901 2.0 169.9 1.0 ND B:HEM901 2.1 169.9 1.0 NA B:HEM901 2.1 169.9 1.0 NC B:HEM901 2.1 169.9 1.0 O1 B:OXY902 2.8 169.1 1.0 C4C B:HEM901 3.0 169.9 1.0 C1C B:HEM901 3.0 169.9 1.0 C1D B:HEM901 3.0 169.9 1.0 C4A B:HEM901 3.1 169.9 1.0 C1B B:HEM901 3.1 169.9 1.0 C4B B:HEM901 3.1 169.9 1.0 C1A B:HEM901 3.1 169.9 1.0 C4D B:HEM901 3.1 169.9 1.0 NE2 B:HIS77 3.1 173.2 1.0 O2 B:OXY902 3.2 169.1 1.0 CHD B:HEM901 3.4 169.9 1.0 CHB B:HEM901 3.4 169.9 1.0 CHC B:HEM901 3.4 169.9 1.0 CHA B:HEM901 3.5 169.9 1.0 HD2 B:HIS77 3.7 173.2 1.0 CD2 B:HIS77 3.7 173.2 1.0 HD12 B:ILE69 4.1 172.1 1.0 CE1 B:HIS77 4.1 173.2 1.0 C3C B:HEM901 4.1 169.9 1.0 C2C B:HEM901 4.1 169.9 1.0 C2D B:HEM901 4.3 169.9 1.0 C3A B:HEM901 4.3 169.9 1.0 C2B B:HEM901 4.3 169.9 1.0 C2A B:HEM901 4.3 169.9 1.0 C3B B:HEM901 4.3 169.9 1.0 C3D B:HEM901 4.3 169.9 1.0 HHD B:HEM901 4.3 169.9 1.0 HD13 B:LEU99 4.4 164.6 1.0 HH12 B:ARG97 4.4 166.1 1.0 HE1 B:HIS77 4.4 173.2 1.0 HHB B:HEM901 4.4 169.9 1.0 HHC B:HEM901 4.4 169.9 1.0 HHA B:HEM901 4.4 169.9 1.0 HD2 B:TYR80 4.5 171.9 1.0 HD13 B:ILE69 4.5 172.1 1.0 HH11 B:ARG97 4.6 166.1 1.0 HD11 B:LEU99 4.7 164.6 1.0 NH1 B:ARG97 4.8 166.1 1.0 CD1 B:ILE69 4.8 172.1 1.0 HD21 B:LEU73 4.9 171.3 1.0 CD1 B:LEU99 4.9 164.6 1.0 HD22 B:LEU73 4.9 171.3 1.0 CG B:HIS77 4.9 173.2 1.0

W.Wu, P.Kumar, C.A.Brautigam, S.C.Tso, H.R.Baniasadi, D.L.Kober, M.A.Gilles-Gonzalez. Structures of the Multi-Domain Oxygen Sensor Dosp: Remote Control of A C-Di-Gmp Phosphodiesterase By A Regulatory Pas Domain Nat Commun V. 15 9653 2024.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-024-53942-7