Iron in PDB 9dm1: Mycobacterial Supercomplex Malate:Quinone Oxidoreductase Assembly

All present enzymatic activity of Mycobacterial Supercomplex Malate:Quinone Oxidoreductase Assembly:
1.1.5.4; 1.15.1.1; 7.1.1.8; 7.1.1.9;

The structure of Mycobacterial Supercomplex Malate:Quinone Oxidoreductase Assembly also contains other interesting chemical elements:

Copper

(Cu)

6 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Iron atom in the Mycobacterial Supercomplex Malate:Quinone Oxidoreductase Assembly (pdb code 9dm1). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 16 binding sites of Iron where determined in the Mycobacterial Supercomplex Malate:Quinone Oxidoreductase Assembly, PDB code: 9dm1:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 16 in the Mycobacterial Supercomplex Malate:Quinone Oxidoreductase Assembly


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Mycobacterial Supercomplex Malate:Quinone Oxidoreductase Assembly within 5.0Å range: probe atom residue distance (Å) B Occ R:Fe602 b:50.9 occ:1.00 FE R:HEA602 0.0 50.9 1.0 NA R:HEA602 2.0 50.9 1.0 NC R:HEA602 2.0 50.9 1.0 ND R:HEA602 2.0 50.9 1.0 NB R:HEA602 2.0 50.9 1.0 NE2 R:HIS397 2.8 48.1 1.0 C1D R:HEA602 3.0 50.9 1.0 C4A R:HEA602 3.0 50.9 1.0 C1A R:HEA602 3.0 50.9 1.0 C4C R:HEA602 3.0 50.9 1.0 C1B R:HEA602 3.0 50.9 1.0 C1C R:HEA602 3.0 50.9 1.0 C4B R:HEA602 3.0 50.9 1.0 C4D R:HEA602 3.0 50.9 1.0 CHD R:HEA602 3.4 50.9 1.0 CHC R:HEA602 3.4 50.9 1.0 CHB R:HEA602 3.4 50.9 1.0 CHA R:HEA602 3.4 50.9 1.0 CE1 R:HIS397 3.6 48.1 1.0 CD2 R:HIS397 3.9 48.1 1.0 CU R:CU601 4.0 76.2 1.0 C3A R:HEA602 4.3 50.9 1.0 C2D R:HEA602 4.3 50.9 1.0 C3C R:HEA602 4.3 50.9 1.0 C2B R:HEA602 4.3 50.9 1.0 C2A R:HEA602 4.3 50.9 1.0 C2C R:HEA602 4.3 50.9 1.0 C3B R:HEA602 4.3 50.9 1.0 C3D R:HEA602 4.4 50.9 1.0 CE1 R:HIS313 4.7 52.3 1.0 ND1 R:HIS397 4.8 48.1 1.0 CE1 R:HIS314 4.9 51.6 1.0 CG R:HIS397 5.0 48.1 1.0

Iron binding site 2 out of 16 in the Mycobacterial Supercomplex Malate:Quinone Oxidoreductase Assembly


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Mycobacterial Supercomplex Malate:Quinone Oxidoreductase Assembly within 5.0Å range: probe atom residue distance (Å) B Occ R:Fe603 b:47.0 occ:1.00 FE R:HEA603 0.0 47.0 1.0 NA R:HEA603 2.0 47.0 1.0 ND R:HEA603 2.0 47.0 1.0 NB R:HEA603 2.0 47.0 1.0 NC R:HEA603 2.0 47.0 1.0 NE2 R:HIS86 2.2 44.0 1.0 NE2 R:HIS399 2.3 46.3 1.0 C1A R:HEA603 3.0 47.0 1.0 C4B R:HEA603 3.0 47.0 1.0 C4D R:HEA603 3.0 47.0 1.0 C1C R:HEA603 3.0 47.0 1.0 C1D R:HEA603 3.0 47.0 1.0 C1B R:HEA603 3.0 47.0 1.0 C4A R:HEA603 3.0 47.0 1.0 C4C R:HEA603 3.0 47.0 1.0 CE1 R:HIS86 3.1 44.0 1.0 CD2 R:HIS86 3.2 44.0 1.0 CE1 R:HIS399 3.2 46.3 1.0 CD2 R:HIS399 3.3 46.3 1.0 CHC R:HEA603 3.4 47.0 1.0 CHA R:HEA603 3.4 47.0 1.0 CHD R:HEA603 3.4 47.0 1.0 CHB R:HEA603 3.4 47.0 1.0 ND1 R:HIS86 4.2 44.0 1.0 C3A R:HEA603 4.3 47.0 1.0 C2D R:HEA603 4.3 47.0 1.0 C2B R:HEA603 4.3 47.0 1.0 C3B R:HEA603 4.3 47.0 1.0 C2A R:HEA603 4.3 47.0 1.0 CG R:HIS86 4.3 44.0 1.0 C3C R:HEA603 4.3 47.0 1.0 C2C R:HEA603 4.3 47.0 1.0 C3D R:HEA603 4.3 47.0 1.0 ND1 R:HIS399 4.3 46.3 1.0 CZ R:PHE446 4.3 46.8 1.0 CG R:HIS399 4.4 46.3 1.0 CE1 R:PHE446 4.8 46.8 1.0

Iron binding site 3 out of 16 in the Mycobacterial Supercomplex Malate:Quinone Oxidoreductase Assembly


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Mycobacterial Supercomplex Malate:Quinone Oxidoreductase Assembly within 5.0Å range: probe atom residue distance (Å) B Occ E:Fe601 b:32.6 occ:1.00 FE E:HEM601 0.0 32.6 1.0 NC E:HEM601 2.0 32.6 1.0 NB E:HEM601 2.0 32.6 1.0 ND E:HEM601 2.0 32.6 1.0 NE2 E:HIS226 2.0 32.9 1.0 NA E:HEM601 2.0 32.6 1.0 NE2 E:HIS123 2.6 31.9 1.0 CD2 E:HIS226 2.8 32.9 1.0 CD2 E:HIS123 2.8 31.9 1.0 C4B E:HEM601 3.0 32.6 1.0 CE1 E:HIS226 3.0 32.9 1.0 C1B E:HEM601 3.0 32.6 1.0 C1C E:HEM601 3.0 32.6 1.0 C4D E:HEM601 3.0 32.6 1.0 C4A E:HEM601 3.0 32.6 1.0 C1D E:HEM601 3.1 32.6 1.0 C1A E:HEM601 3.1 32.6 1.0 C4C E:HEM601 3.1 32.6 1.0 CHC E:HEM601 3.4 32.6 1.0 CHB E:HEM601 3.4 32.6 1.0 CHA E:HEM601 3.4 32.6 1.0 CHD E:HEM601 3.4 32.6 1.0 CE1 E:HIS123 3.9 31.9 1.0 CG E:HIS226 3.9 32.9 1.0 ND1 E:HIS226 3.9 32.9 1.0 CG E:HIS123 4.2 31.9 1.0 C3B E:HEM601 4.2 32.6 1.0 C2B E:HEM601 4.2 32.6 1.0 C2C E:HEM601 4.2 32.6 1.0 C3D E:HEM601 4.2 32.6 1.0 C3A E:HEM601 4.3 32.6 1.0 C2A E:HEM601 4.3 32.6 1.0 C3C E:HEM601 4.3 32.6 1.0 C2D E:HEM601 4.3 32.6 1.0 ND1 E:HIS123 4.6 31.9 1.0

Iron binding site 4 out of 16 in the Mycobacterial Supercomplex Malate:Quinone Oxidoreductase Assembly


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Mycobacterial Supercomplex Malate:Quinone Oxidoreductase Assembly within 5.0Å range: probe atom residue distance (Å) B Occ E:Fe602 b:32.6 occ:1.00 FE E:HEM602 0.0 32.6 1.0 NE2 E:HIS211 1.9 32.8 1.0 NC E:HEM602 2.0 32.6 1.0 NA E:HEM602 2.0 32.6 1.0 NB E:HEM602 2.1 32.6 1.0 ND E:HEM602 2.1 32.6 1.0 NE2 E:HIS109 2.5 32.0 1.0 CE1 E:HIS211 2.5 32.8 1.0 C4A E:HEM602 3.0 32.6 1.0 C4C E:HEM602 3.0 32.6 1.0 C1A E:HEM602 3.0 32.6 1.0 C1C E:HEM602 3.0 32.6 1.0 C1B E:HEM602 3.0 32.6 1.0 C4D E:HEM602 3.1 32.6 1.0 C1D E:HEM602 3.1 32.6 1.0 C4B E:HEM602 3.1 32.6 1.0 CD2 E:HIS211 3.2 32.8 1.0 CHB E:HEM602 3.4 32.6 1.0 CD2 E:HIS109 3.4 32.0 1.0 CHA E:HEM602 3.4 32.6 1.0 CHD E:HEM602 3.4 32.6 1.0 CHC E:HEM602 3.4 32.6 1.0 CE1 E:HIS109 3.5 32.0 1.0 ND1 E:HIS211 3.8 32.8 1.0 CG E:HIS211 4.1 32.8 1.0 C3A E:HEM602 4.2 32.6 1.0 C2A E:HEM602 4.2 32.6 1.0 C3C E:HEM602 4.3 32.6 1.0 C2C E:HEM602 4.3 32.6 1.0 C2B E:HEM602 4.3 32.6 1.0 C3D E:HEM602 4.3 32.6 1.0 C2D E:HEM602 4.3 32.6 1.0 C3B E:HEM602 4.3 32.6 1.0 CA E:GLY158 4.5 33.2 1.0 ND1 E:HIS109 4.6 32.0 1.0 CG E:HIS109 4.6 32.0 1.0

Iron binding site 5 out of 16 in the Mycobacterial Supercomplex Malate:Quinone Oxidoreductase Assembly


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Mycobacterial Supercomplex Malate:Quinone Oxidoreductase Assembly within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe702 b:36.3 occ:1.00 FE F:HEM702 0.0 36.3 1.0 ND F:HEM702 2.0 36.3 1.0 NB F:HEM702 2.0 36.3 1.0 NC F:HEM702 2.0 36.3 1.0 NA F:HEM702 2.0 36.3 1.0 NE2 F:HIS226 2.0 36.1 1.0 NE2 F:HIS123 2.6 36.1 1.0 CD2 F:HIS226 2.8 36.1 1.0 CD2 F:HIS123 2.8 36.1 1.0 C4B F:HEM702 3.0 36.3 1.0 CE1 F:HIS226 3.0 36.1 1.0 C1B F:HEM702 3.0 36.3 1.0 C4D F:HEM702 3.0 36.3 1.0 C1C F:HEM702 3.0 36.3 1.0 C4A F:HEM702 3.1 36.3 1.0 C1A F:HEM702 3.1 36.3 1.0 C1D F:HEM702 3.1 36.3 1.0 C4C F:HEM702 3.1 36.3 1.0 CHC F:HEM702 3.4 36.3 1.0 CHB F:HEM702 3.4 36.3 1.0 CHA F:HEM702 3.4 36.3 1.0 CHD F:HEM702 3.4 36.3 1.0 CG F:HIS226 3.9 36.1 1.0 CE1 F:HIS123 3.9 36.1 1.0 ND1 F:HIS226 4.0 36.1 1.0 CG F:HIS123 4.2 36.1 1.0 C3B F:HEM702 4.2 36.3 1.0 C2B F:HEM702 4.2 36.3 1.0 C3D F:HEM702 4.2 36.3 1.0 C3A F:HEM702 4.3 36.3 1.0 C2A F:HEM702 4.3 36.3 1.0 C2C F:HEM702 4.3 36.3 1.0 C2D F:HEM702 4.3 36.3 1.0 C3C F:HEM702 4.3 36.3 1.0 ND1 F:HIS123 4.6 36.1 1.0

Iron binding site 6 out of 16 in the Mycobacterial Supercomplex Malate:Quinone Oxidoreductase Assembly


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Mycobacterial Supercomplex Malate:Quinone Oxidoreductase Assembly within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe703 b:35.5 occ:1.00 FE F:HEM703 0.0 35.5 1.0 NE2 F:HIS211 1.9 34.6 1.0 NC F:HEM703 2.0 35.5 1.0 NA F:HEM703 2.0 35.5 1.0 NB F:HEM703 2.0 35.5 1.0 ND F:HEM703 2.1 35.5 1.0 NE2 F:HIS109 2.5 35.3 1.0 CE1 F:HIS211 2.5 34.6 1.0 C4A F:HEM703 3.0 35.5 1.0 C1B F:HEM703 3.0 35.5 1.0 C1C F:HEM703 3.0 35.5 1.0 C4C F:HEM703 3.0 35.5 1.0 C1A F:HEM703 3.1 35.5 1.0 C4D F:HEM703 3.1 35.5 1.0 C4B F:HEM703 3.1 35.5 1.0 C1D F:HEM703 3.1 35.5 1.0 CD2 F:HIS211 3.2 34.6 1.0 CHB F:HEM703 3.4 35.5 1.0 CE1 F:HIS109 3.4 35.3 1.0 CHC F:HEM703 3.4 35.5 1.0 CHD F:HEM703 3.4 35.5 1.0 CHA F:HEM703 3.4 35.5 1.0 CD2 F:HIS109 3.5 35.3 1.0 ND1 F:HIS211 3.8 34.6 1.0 CG F:HIS211 4.1 34.6 1.0 C3A F:HEM703 4.2 35.5 1.0 C2A F:HEM703 4.3 35.5 1.0 C2B F:HEM703 4.3 35.5 1.0 C2C F:HEM703 4.3 35.5 1.0 C3C F:HEM703 4.3 35.5 1.0 C3B F:HEM703 4.3 35.5 1.0 C3D F:HEM703 4.3 35.5 1.0 C2D F:HEM703 4.3 35.5 1.0 OE2 F:GLU154 4.5 35.9 1.0 ND1 F:HIS109 4.6 35.3 1.0 CG F:HIS109 4.7 35.3 1.0 CA F:GLY158 4.7 35.6 1.0 O F:HIS211 4.8 34.6 1.0

Iron binding site 7 out of 16 in the Mycobacterial Supercomplex Malate:Quinone Oxidoreductase Assembly


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Mycobacterial Supercomplex Malate:Quinone Oxidoreductase Assembly within 5.0Å range: probe atom residue distance (Å) B Occ L:Fe602 b:47.9 occ:1.00 FE L:HEA602 0.0 47.9 1.0 NA L:HEA602 2.0 47.9 1.0 NC L:HEA602 2.0 47.9 1.0 ND L:HEA602 2.0 47.9 1.0 NB L:HEA602 2.0 47.9 1.0 NE2 L:HIS397 2.8 45.6 1.0 C4A L:HEA602 3.0 47.9 1.0 C1D L:HEA602 3.0 47.9 1.0 C1A L:HEA602 3.0 47.9 1.0 C1C L:HEA602 3.0 47.9 1.0 C4C L:HEA602 3.0 47.9 1.0 C1B L:HEA602 3.0 47.9 1.0 C4B L:HEA602 3.0 47.9 1.0 C4D L:HEA602 3.0 47.9 1.0 CHD L:HEA602 3.4 47.9 1.0 CHB L:HEA602 3.4 47.9 1.0 CHC L:HEA602 3.4 47.9 1.0 CHA L:HEA602 3.4 47.9 1.0 CE1 L:HIS397 3.6 45.6 1.0 CD2 L:HIS397 3.9 45.6 1.0 CU L:CU601 4.1 70.8 1.0 C3A L:HEA602 4.3 47.9 1.0 C2D L:HEA602 4.3 47.9 1.0 C3C L:HEA602 4.3 47.9 1.0 C2B L:HEA602 4.3 47.9 1.0 C2C L:HEA602 4.3 47.9 1.0 C2A L:HEA602 4.3 47.9 1.0 C3B L:HEA602 4.3 47.9 1.0 C3D L:HEA602 4.3 47.9 1.0 NE2 L:HIS313 4.5 48.5 1.0 CE1 L:HIS314 4.8 47.9 1.0 ND1 L:HIS397 4.8 45.6 1.0 CG L:HIS397 5.0 45.6 1.0

Iron binding site 8 out of 16 in the Mycobacterial Supercomplex Malate:Quinone Oxidoreductase Assembly


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Mycobacterial Supercomplex Malate:Quinone Oxidoreductase Assembly within 5.0Å range: probe atom residue distance (Å) B Occ L:Fe603 b:43.8 occ:1.00 FE L:HEA603 0.0 43.8 1.0 NB L:HEA603 2.0 43.8 1.0 ND L:HEA603 2.0 43.8 1.0 NA L:HEA603 2.0 43.8 1.0 NE2 L:HIS399 2.0 43.1 1.0 NC L:HEA603 2.0 43.8 1.0 NE2 L:HIS86 2.5 40.4 1.0 CE1 L:HIS399 2.7 43.1 1.0 C4B L:HEA603 3.0 43.8 1.0 C1A L:HEA603 3.0 43.8 1.0 C1D L:HEA603 3.0 43.8 1.0 C4D L:HEA603 3.0 43.8 1.0 C1B L:HEA603 3.0 43.8 1.0 C4A L:HEA603 3.0 43.8 1.0 C1C L:HEA603 3.0 43.8 1.0 C4C L:HEA603 3.0 43.8 1.0 CD2 L:HIS399 3.1 43.1 1.0 CD2 L:HIS86 3.3 40.4 1.0 CHC L:HEA603 3.4 43.8 1.0 CHA L:HEA603 3.4 43.8 1.0 CHD L:HEA603 3.4 43.8 1.0 CHB L:HEA603 3.4 43.8 1.0 CE1 L:HIS86 3.6 40.4 1.0 ND1 L:HIS399 3.9 43.1 1.0 CG L:HIS399 4.1 43.1 1.0 C3A L:HEA603 4.3 43.8 1.0 C2D L:HEA603 4.3 43.8 1.0 C2B L:HEA603 4.3 43.8 1.0 C3B L:HEA603 4.3 43.8 1.0 C3C L:HEA603 4.3 43.8 1.0 C2A L:HEA603 4.3 43.8 1.0 C3D L:HEA603 4.3 43.8 1.0 C2C L:HEA603 4.3 43.8 1.0 CG L:HIS86 4.5 40.4 1.0 ND1 L:HIS86 4.6 40.4 1.0 CZ L:PHE446 4.6 44.3 1.0 CE1 L:PHE398 4.9 44.4 1.0

Iron binding site 9 out of 16 in the Mycobacterial Supercomplex Malate:Quinone Oxidoreductase Assembly


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Mycobacterial Supercomplex Malate:Quinone Oxidoreductase Assembly within 5.0Å range: probe atom residue distance (Å) B Occ O:Fe301 b:57.0 occ:1.00 FE O:HEC301 0.0 57.0 1.0 NE2 O:HIS91 1.9 58.2 1.0 NC O:HEC301 2.0 57.0 1.0 NB O:HEC301 2.1 57.0 1.0 NA O:HEC301 2.1 57.0 1.0 ND O:HEC301 2.1 57.0 1.0 CD2 O:HIS91 2.7 58.2 1.0 SD O:MET122 2.7 55.9 1.0 CE1 O:HIS91 2.9 58.2 1.0 C1D O:HEC301 3.1 57.0 1.0 C4A O:HEC301 3.1 57.0 1.0 C4C O:HEC301 3.1 57.0 1.0 C1B O:HEC301 3.1 57.0 1.0 C1C O:HEC301 3.1 57.0 1.0 C1A O:HEC301 3.1 57.0 1.0 C4B O:HEC301 3.1 57.0 1.0 C4D O:HEC301 3.1 57.0 1.0 CHD O:HEC301 3.4 57.0 1.0 CHB O:HEC301 3.4 57.0 1.0 CHC O:HEC301 3.4 57.0 1.0 CHA O:HEC301 3.5 57.0 1.0 CG O:HIS91 3.8 58.2 1.0 ND1 O:HIS91 3.9 58.2 1.0 CG O:MET122 4.0 55.9 1.0 CE O:MET122 4.2 55.9 1.0 C3A O:HEC301 4.3 57.0 1.0 C2A O:HEC301 4.3 57.0 1.0 C2C O:HEC301 4.3 57.0 1.0 C3C O:HEC301 4.3 57.0 1.0 C2B O:HEC301 4.3 57.0 1.0 C2D O:HEC301 4.3 57.0 1.0 C3B O:HEC301 4.3 57.0 1.0 C3D O:HEC301 4.3 57.0 1.0 CB O:MET122 4.5 55.9 1.0 O O:MET122 4.7 55.9 1.0 CD2 O:LEU105 4.7 59.9 1.0 CA O:MET122 4.9 55.9 1.0

Iron binding site 10 out of 16 in the Mycobacterial Supercomplex Malate:Quinone Oxidoreductase Assembly


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Mycobacterial Supercomplex Malate:Quinone Oxidoreductase Assembly within 5.0Å range: probe atom residue distance (Å) B Occ O:Fe302 b:49.6 occ:1.00 FE O:HEC302 0.0 49.6 1.0 NC O:HEC302 2.0 49.6 1.0 NA O:HEC302 2.0 49.6 1.0 NE2 O:HIS192 2.0 47.1 1.0 ND O:HEC302 2.1 49.6 1.0 NB O:HEC302 2.1 49.6 1.0 SD O:MET229 2.9 50.1 1.0 CD2 O:HIS192 2.9 47.1 1.0 C1B O:HEC302 3.0 49.6 1.0 C4A O:HEC302 3.0 49.6 1.0 C4C O:HEC302 3.0 49.6 1.0 C1D O:HEC302 3.0 49.6 1.0 C1C O:HEC302 3.1 49.6 1.0 CE1 O:HIS192 3.1 47.1 1.0 C4B O:HEC302 3.1 49.6 1.0 C1A O:HEC302 3.1 49.6 1.0 C4D O:HEC302 3.1 49.6 1.0 CE O:MET229 3.2 50.1 1.0 CHB O:HEC302 3.3 49.6 1.0 CHD O:HEC302 3.4 49.6 1.0 CHC O:HEC302 3.4 49.6 1.0 CHA O:HEC302 3.4 49.6 1.0 CG O:MET229 4.0 50.1 1.0 CG O:HIS192 4.1 47.1 1.0 ND1 O:HIS192 4.1 47.1 1.0 C2B O:HEC302 4.2 49.6 1.0 C3B O:HEC302 4.2 49.6 1.0 C3A O:HEC302 4.3 49.6 1.0 C3C O:HEC302 4.3 49.6 1.0 C2C O:HEC302 4.3 49.6 1.0 C2A O:HEC302 4.3 49.6 1.0 C2D O:HEC302 4.3 49.6 1.0 C3D O:HEC302 4.3 49.6 1.0 CB O:MET229 4.7 50.1 1.0 SG O:CYS188 4.9 48.5 1.0

J.M.Di Trani, J.Yu, G.M.Courbon, A.P.Lobez Rodriguez, J.Cheung, Y.Liang, C.E.Coupland, S.A.Bueler, G.M.Cook, P.Brzezinski, J.L.Rubinstein. Cryo-Em of Native Membranes Reveals An Intimate Connection Between Krebs Cycle and Respiration in Mycobacteria To Be Published.