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Iron in PDB 9f0f: Coproporphyrin III - Lmcpfc Wt Complex Soaked with FE2+ and Anomalous Densities

Enzymatic activity of Coproporphyrin III - Lmcpfc Wt Complex Soaked with FE2+ and Anomalous Densities

All present enzymatic activity of Coproporphyrin III - Lmcpfc Wt Complex Soaked with FE2+ and Anomalous Densities:
4.99.1.9;

Protein crystallography data

The structure of Coproporphyrin III - Lmcpfc Wt Complex Soaked with FE2+ and Anomalous Densities, PDB code: 9f0f was solved by T.Gabler, S.Hofauer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.17 / 2.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 37.158, 67.73, 62.494, 90, 103.22, 90
R / Rfree (%) 18.3 / 23.9

Other elements in 9f0f:

The structure of Coproporphyrin III - Lmcpfc Wt Complex Soaked with FE2+ and Anomalous Densities also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Coproporphyrin III - Lmcpfc Wt Complex Soaked with FE2+ and Anomalous Densities (pdb code 9f0f). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Coproporphyrin III - Lmcpfc Wt Complex Soaked with FE2+ and Anomalous Densities, PDB code: 9f0f:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 9f0f

Go back to Iron Binding Sites List in 9f0f
Iron binding site 1 out of 2 in the Coproporphyrin III - Lmcpfc Wt Complex Soaked with FE2+ and Anomalous Densities


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Coproporphyrin III - Lmcpfc Wt Complex Soaked with FE2+ and Anomalous Densities within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe404

b:47.3
occ:0.46
N2 A:HT9401 2.0 46.7 1.0
N3 A:HT9401 2.0 38.4 1.0
N1 A:HT9401 2.1 41.8 1.0
N4 A:HT9401 2.3 42.6 1.0
OH A:TYR12 2.7 45.6 1.0
CZ A:TYR12 2.8 46.3 1.0
C8 A:HT9401 3.0 45.2 1.0
C7 A:HT9401 3.0 49.9 1.0
C12 A:HT9401 3.0 52.3 1.0
C4 A:HT9401 3.0 45.4 1.0
C13 A:HT9401 3.1 45.6 1.0
C3 A:HT9401 3.2 40.1 1.0
C17 A:HT9401 3.2 37.5 1.0
C18 A:HT9401 3.3 37.9 1.0
CE2 A:TYR12 3.3 42.4 1.0
CE1 A:TYR12 3.3 42.6 1.0
C14 A:HT9401 3.3 46.0 1.0
C9 A:HT9401 3.3 46.5 1.0
C20 A:HT9401 3.5 42.0 1.0
NE2 A:HIS182 3.5 48.1 1.0
C19 A:HT9401 3.6 37.0 1.0
CD2 A:HIS182 4.0 47.5 1.0
CD2 A:TYR12 4.1 39.2 1.0
CD1 A:TYR12 4.1 40.6 1.0
C5 A:HT9401 4.2 50.4 1.0
C6 A:HT9401 4.2 47.1 1.0
OE2 A:GLU263 4.2 54.7 1.0
C11 A:HT9401 4.3 47.4 1.0
C1 A:HT9401 4.3 45.2 1.0
C10 A:HT9401 4.3 41.2 1.0
CE1 A:HIS182 4.3 47.8 1.0
C2 A:HT9401 4.4 36.1 1.0
C16 A:HT9401 4.5 42.1 1.0
CG A:TYR12 4.5 42.0 1.0
C15 A:HT9401 4.5 40.2 1.0
CG A:HIS182 5.0 41.8 1.0

Iron binding site 2 out of 2 in 9f0f

Go back to Iron Binding Sites List in 9f0f
Iron binding site 2 out of 2 in the Coproporphyrin III - Lmcpfc Wt Complex Soaked with FE2+ and Anomalous Densities


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Coproporphyrin III - Lmcpfc Wt Complex Soaked with FE2+ and Anomalous Densities within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe405

b:76.6
occ:1.00
O A:HOH562 2.2 52.2 1.0
O A:HOH549 2.4 45.5 1.0
O A:HOH589 2.6 43.5 1.0
O A:HOH572 2.6 41.6 1.0
O A:HOH537 2.6 48.0 1.0
OD1 A:ASP267 4.2 57.9 1.0
OE2 A:GLU271 4.3 47.2 1.0
OE1 A:GLU271 4.3 45.2 1.0
O A:GLU222 4.4 36.0 1.0
CA A:SER221 4.6 36.0 1.0
CD A:GLU271 4.7 46.1 1.0
O A:HOH559 4.8 36.5 1.0
CG A:ASP267 4.9 56.3 1.0
C A:SER221 5.0 40.4 1.0

Reference:

T.Gabler, S.Hofauer. Coproporphyrin III - Lmcpfc Wt Complex Soaked with FE2+ and Anomalous Densities To Be Published.
Page generated: Sat Aug 10 20:29:12 2024

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