Iron in PDB 9fu0: CIII2/Civ Respiratory Chain Supercomplex From Mycobacterium Smegmatis
Enzymatic activity of CIII2/Civ Respiratory Chain Supercomplex From Mycobacterium Smegmatis
All present enzymatic activity of CIII2/Civ Respiratory Chain Supercomplex From Mycobacterium Smegmatis:
1.15.1.1;
7.1.1.8;
7.1.1.9;
Other elements in 9fu0:
The structure of CIII2/Civ Respiratory Chain Supercomplex From Mycobacterium Smegmatis also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Iron atom in the CIII2/Civ Respiratory Chain Supercomplex From Mycobacterium Smegmatis
(pdb code 9fu0). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the
CIII2/Civ Respiratory Chain Supercomplex From Mycobacterium Smegmatis, PDB code: 9fu0:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 12 in 9fu0
Go back to
Iron Binding Sites List in 9fu0
Iron binding site 1 out
of 12 in the CIII2/Civ Respiratory Chain Supercomplex From Mycobacterium Smegmatis
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of CIII2/Civ Respiratory Chain Supercomplex From Mycobacterium Smegmatis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Fe302
b:67.7
occ:1.00
|
FE
|
O:HEC302
|
0.0
|
67.7
|
1.0
|
|
NC
|
O:HEC302
|
2.0
|
67.7
|
1.0
|
|
NA
|
O:HEC302
|
2.0
|
67.7
|
1.0
|
|
NB
|
O:HEC302
|
2.1
|
67.7
|
1.0
|
|
ND
|
O:HEC302
|
2.1
|
67.7
|
1.0
|
|
NE2
|
O:HIS192
|
3.0
|
63.2
|
1.0
|
|
C4C
|
O:HEC302
|
3.1
|
67.7
|
1.0
|
|
SD
|
O:MET229
|
3.1
|
68.5
|
1.0
|
|
C1A
|
O:HEC302
|
3.1
|
67.7
|
1.0
|
|
C1D
|
O:HEC302
|
3.1
|
67.7
|
1.0
|
|
C4A
|
O:HEC302
|
3.1
|
67.7
|
1.0
|
|
C4D
|
O:HEC302
|
3.1
|
67.7
|
1.0
|
|
C1B
|
O:HEC302
|
3.1
|
67.7
|
1.0
|
|
C4B
|
O:HEC302
|
3.1
|
67.7
|
1.0
|
|
C1C
|
O:HEC302
|
3.1
|
67.7
|
1.0
|
|
CHD
|
O:HEC302
|
3.4
|
67.7
|
1.0
|
|
CHA
|
O:HEC302
|
3.4
|
67.7
|
1.0
|
|
CHB
|
O:HEC302
|
3.4
|
67.7
|
1.0
|
|
CHC
|
O:HEC302
|
3.5
|
67.7
|
1.0
|
|
CE
|
O:MET229
|
3.8
|
68.5
|
1.0
|
|
CG
|
O:MET229
|
3.8
|
68.5
|
1.0
|
|
CD2
|
O:HIS192
|
3.8
|
63.2
|
1.0
|
|
CE1
|
O:HIS192
|
3.9
|
63.2
|
1.0
|
|
C3C
|
O:HEC302
|
4.3
|
67.7
|
1.0
|
|
C3A
|
O:HEC302
|
4.3
|
67.7
|
1.0
|
|
C2A
|
O:HEC302
|
4.3
|
67.7
|
1.0
|
|
C2B
|
O:HEC302
|
4.3
|
67.7
|
1.0
|
|
C2D
|
O:HEC302
|
4.3
|
67.7
|
1.0
|
|
C2C
|
O:HEC302
|
4.3
|
67.7
|
1.0
|
|
C3B
|
O:HEC302
|
4.3
|
67.7
|
1.0
|
|
C3D
|
O:HEC302
|
4.3
|
67.7
|
1.0
|
|
CB
|
O:MET229
|
4.7
|
68.5
|
1.0
|
|
Iron binding site 2 out
of 12 in 9fu0
Go back to
Iron Binding Sites List in 9fu0
Iron binding site 2 out
of 12 in the CIII2/Civ Respiratory Chain Supercomplex From Mycobacterium Smegmatis
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of CIII2/Civ Respiratory Chain Supercomplex From Mycobacterium Smegmatis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Fe303
b:77.2
occ:1.00
|
FE
|
O:HEC303
|
0.0
|
77.2
|
1.0
|
|
NC
|
O:HEC303
|
2.0
|
77.2
|
1.0
|
|
NA
|
O:HEC303
|
2.1
|
77.2
|
1.0
|
|
NB
|
O:HEC303
|
2.1
|
77.2
|
1.0
|
|
ND
|
O:HEC303
|
2.1
|
77.2
|
1.0
|
|
NE2
|
O:HIS91
|
2.1
|
78.2
|
1.0
|
|
SD
|
O:MET122
|
2.9
|
70.2
|
1.0
|
|
CE1
|
O:HIS91
|
3.0
|
78.2
|
1.0
|
|
C4C
|
O:HEC303
|
3.1
|
77.2
|
1.0
|
|
C1C
|
O:HEC303
|
3.1
|
77.2
|
1.0
|
|
C1D
|
O:HEC303
|
3.1
|
77.2
|
1.0
|
|
C4B
|
O:HEC303
|
3.1
|
77.2
|
1.0
|
|
C1A
|
O:HEC303
|
3.1
|
77.2
|
1.0
|
|
C1B
|
O:HEC303
|
3.1
|
77.2
|
1.0
|
|
C4A
|
O:HEC303
|
3.1
|
77.2
|
1.0
|
|
C4D
|
O:HEC303
|
3.1
|
77.2
|
1.0
|
|
CD2
|
O:HIS91
|
3.2
|
78.2
|
1.0
|
|
CHD
|
O:HEC303
|
3.4
|
77.2
|
1.0
|
|
CHA
|
O:HEC303
|
3.4
|
77.2
|
1.0
|
|
CHC
|
O:HEC303
|
3.4
|
77.2
|
1.0
|
|
CHB
|
O:HEC303
|
3.5
|
77.2
|
1.0
|
|
CG
|
O:MET122
|
4.1
|
70.2
|
1.0
|
|
ND1
|
O:HIS91
|
4.2
|
78.2
|
1.0
|
|
C3C
|
O:HEC303
|
4.3
|
77.2
|
1.0
|
|
C2C
|
O:HEC303
|
4.3
|
77.2
|
1.0
|
|
C3B
|
O:HEC303
|
4.3
|
77.2
|
1.0
|
|
C2B
|
O:HEC303
|
4.3
|
77.2
|
1.0
|
|
CE
|
O:MET122
|
4.3
|
70.2
|
1.0
|
|
CG
|
O:HIS91
|
4.3
|
78.2
|
1.0
|
|
C3A
|
O:HEC303
|
4.3
|
77.2
|
1.0
|
|
C2A
|
O:HEC303
|
4.3
|
77.2
|
1.0
|
|
C2D
|
O:HEC303
|
4.3
|
77.2
|
1.0
|
|
C3D
|
O:HEC303
|
4.3
|
77.2
|
1.0
|
|
CB
|
O:MET122
|
4.7
|
70.2
|
1.0
|
|
Iron binding site 3 out
of 12 in 9fu0
Go back to
Iron Binding Sites List in 9fu0
Iron binding site 3 out
of 12 in the CIII2/Civ Respiratory Chain Supercomplex From Mycobacterium Smegmatis
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of CIII2/Civ Respiratory Chain Supercomplex From Mycobacterium Smegmatis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Fe501
b:51.8
occ:1.00
|
FE1
|
M:FES501
|
0.0
|
51.8
|
1.0
|
|
ND1
|
M:HIS368
|
2.2
|
47.3
|
1.0
|
|
S1
|
M:FES501
|
2.2
|
51.8
|
1.0
|
|
S2
|
M:FES501
|
2.2
|
51.8
|
1.0
|
|
ND1
|
M:HIS348
|
2.3
|
44.5
|
1.0
|
|
FE2
|
M:FES501
|
3.1
|
51.8
|
1.0
|
|
CG
|
M:HIS368
|
3.1
|
47.3
|
1.0
|
|
CE1
|
M:HIS368
|
3.2
|
47.3
|
1.0
|
|
CE1
|
M:HIS348
|
3.3
|
44.5
|
1.0
|
|
CB
|
M:HIS368
|
3.3
|
47.3
|
1.0
|
|
CG
|
M:HIS348
|
3.3
|
44.5
|
1.0
|
|
CB
|
M:HIS348
|
3.6
|
44.5
|
1.0
|
|
N
|
M:HIS368
|
3.9
|
47.3
|
1.0
|
|
CA
|
M:HIS368
|
4.1
|
47.3
|
1.0
|
|
CB
|
M:LEU349
|
4.2
|
45.7
|
1.0
|
|
CD2
|
M:HIS368
|
4.3
|
47.3
|
1.0
|
|
NE2
|
M:HIS368
|
4.3
|
47.3
|
1.0
|
|
N
|
M:LEU349
|
4.3
|
45.7
|
1.0
|
|
CG
|
M:LEU349
|
4.4
|
45.7
|
1.0
|
|
NE2
|
M:HIS348
|
4.4
|
44.5
|
1.0
|
|
CD2
|
M:HIS348
|
4.5
|
44.5
|
1.0
|
|
CD1
|
M:LEU349
|
4.5
|
45.7
|
1.0
|
|
CG
|
M:PRO384
|
4.5
|
47.0
|
1.0
|
|
CB
|
M:CYS367
|
4.6
|
50.0
|
1.0
|
|
OG
|
M:SER370
|
4.6
|
48.0
|
1.0
|
|
SG
|
M:CYS365
|
4.8
|
49.8
|
1.0
|
|
SG
|
M:CYS346
|
4.8
|
48.3
|
1.0
|
|
C
|
M:HIS368
|
4.8
|
47.3
|
1.0
|
|
CA
|
M:HIS348
|
4.8
|
44.5
|
1.0
|
|
C
|
M:HIS348
|
4.8
|
44.5
|
1.0
|
|
CA
|
M:LEU349
|
4.9
|
45.7
|
1.0
|
|
C
|
M:CYS367
|
4.9
|
50.0
|
1.0
|
|
O
|
M:HIS368
|
5.0
|
47.3
|
1.0
|
|
Iron binding site 4 out
of 12 in 9fu0
Go back to
Iron Binding Sites List in 9fu0
Iron binding site 4 out
of 12 in the CIII2/Civ Respiratory Chain Supercomplex From Mycobacterium Smegmatis
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of CIII2/Civ Respiratory Chain Supercomplex From Mycobacterium Smegmatis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Fe501
b:51.8
occ:1.00
|
FE2
|
M:FES501
|
0.0
|
51.8
|
1.0
|
|
SG
|
M:CYS365
|
2.2
|
49.8
|
1.0
|
|
S2
|
M:FES501
|
2.2
|
51.8
|
1.0
|
|
S1
|
M:FES501
|
2.2
|
51.8
|
1.0
|
|
SG
|
M:CYS346
|
2.5
|
48.3
|
1.0
|
|
CB
|
M:CYS346
|
2.8
|
48.3
|
1.0
|
|
FE1
|
M:FES501
|
3.1
|
51.8
|
1.0
|
|
CB
|
M:CYS365
|
3.3
|
49.8
|
1.0
|
|
CB
|
M:CYS351
|
4.0
|
49.7
|
1.0
|
|
CB
|
M:HIS348
|
4.3
|
44.5
|
1.0
|
|
CA
|
M:CYS346
|
4.3
|
48.3
|
1.0
|
|
N
|
M:CYS351
|
4.4
|
49.7
|
1.0
|
|
O
|
M:CYS351
|
4.4
|
49.7
|
1.0
|
|
N
|
M:LEU349
|
4.6
|
45.7
|
1.0
|
|
CA
|
M:CYS351
|
4.7
|
49.7
|
1.0
|
|
CB
|
M:CYS367
|
4.7
|
50.0
|
1.0
|
|
CA
|
M:CYS365
|
4.7
|
49.8
|
1.0
|
|
CB
|
M:SER370
|
4.7
|
48.0
|
1.0
|
|
OG
|
M:SER370
|
4.7
|
48.0
|
1.0
|
|
ND1
|
M:HIS368
|
4.8
|
47.3
|
1.0
|
|
ND1
|
M:HIS348
|
4.8
|
44.5
|
1.0
|
|
N
|
M:HIS368
|
4.8
|
47.3
|
1.0
|
|
C
|
M:CYS346
|
4.9
|
48.3
|
1.0
|
|
C
|
M:CYS351
|
4.9
|
49.7
|
1.0
|
|
N
|
M:HIS348
|
4.9
|
44.5
|
1.0
|
|
SG
|
M:CYS351
|
5.0
|
49.7
|
1.0
|
|
Iron binding site 5 out
of 12 in 9fu0
Go back to
Iron Binding Sites List in 9fu0
Iron binding site 5 out
of 12 in the CIII2/Civ Respiratory Chain Supercomplex From Mycobacterium Smegmatis
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of CIII2/Civ Respiratory Chain Supercomplex From Mycobacterium Smegmatis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Fe602
b:34.4
occ:1.00
|
FE
|
N:HEM602
|
0.0
|
34.4
|
1.0
|
|
NC
|
N:HEM602
|
2.0
|
34.4
|
1.0
|
|
NB
|
N:HEM602
|
2.0
|
34.4
|
1.0
|
|
ND
|
N:HEM602
|
2.0
|
34.4
|
1.0
|
|
NA
|
N:HEM602
|
2.1
|
34.4
|
1.0
|
|
NE2
|
N:HIS211
|
2.2
|
37.8
|
1.0
|
|
NE2
|
N:HIS109
|
2.3
|
36.5
|
1.0
|
|
CE1
|
N:HIS211
|
2.8
|
37.8
|
1.0
|
|
C1C
|
N:HEM602
|
3.0
|
34.4
|
1.0
|
|
C4B
|
N:HEM602
|
3.1
|
34.4
|
1.0
|
|
C4D
|
N:HEM602
|
3.1
|
34.4
|
1.0
|
|
C1A
|
N:HEM602
|
3.1
|
34.4
|
1.0
|
|
C4A
|
N:HEM602
|
3.1
|
34.4
|
1.0
|
|
C4C
|
N:HEM602
|
3.1
|
34.4
|
1.0
|
|
C1B
|
N:HEM602
|
3.1
|
34.4
|
1.0
|
|
C1D
|
N:HEM602
|
3.1
|
34.4
|
1.0
|
|
CE1
|
N:HIS109
|
3.1
|
36.5
|
1.0
|
|
CD2
|
N:HIS211
|
3.4
|
37.8
|
1.0
|
|
CHC
|
N:HEM602
|
3.4
|
34.4
|
1.0
|
|
CHA
|
N:HEM602
|
3.4
|
34.4
|
1.0
|
|
CHB
|
N:HEM602
|
3.4
|
34.4
|
1.0
|
|
CHD
|
N:HEM602
|
3.4
|
34.4
|
1.0
|
|
CD2
|
N:HIS109
|
3.5
|
36.5
|
1.0
|
|
ND1
|
N:HIS211
|
4.1
|
37.8
|
1.0
|
|
C3A
|
N:HEM602
|
4.3
|
34.4
|
1.0
|
|
C2A
|
N:HEM602
|
4.3
|
34.4
|
1.0
|
|
C2C
|
N:HEM602
|
4.3
|
34.4
|
1.0
|
|
C3D
|
N:HEM602
|
4.3
|
34.4
|
1.0
|
|
C3C
|
N:HEM602
|
4.3
|
34.4
|
1.0
|
|
C2D
|
N:HEM602
|
4.3
|
34.4
|
1.0
|
|
C3B
|
N:HEM602
|
4.3
|
34.4
|
1.0
|
|
ND1
|
N:HIS109
|
4.3
|
36.5
|
1.0
|
|
C2B
|
N:HEM602
|
4.3
|
34.4
|
1.0
|
|
CG
|
N:HIS211
|
4.4
|
37.8
|
1.0
|
|
CG
|
N:HIS109
|
4.5
|
36.5
|
1.0
|
|
Iron binding site 6 out
of 12 in 9fu0
Go back to
Iron Binding Sites List in 9fu0
Iron binding site 6 out
of 12 in the CIII2/Civ Respiratory Chain Supercomplex From Mycobacterium Smegmatis
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of CIII2/Civ Respiratory Chain Supercomplex From Mycobacterium Smegmatis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Fe606
b:35.7
occ:1.00
|
FE
|
N:HEM606
|
0.0
|
35.7
|
1.0
|
|
NE2
|
N:HIS123
|
2.0
|
38.1
|
1.0
|
|
NB
|
N:HEM606
|
2.0
|
35.7
|
1.0
|
|
NC
|
N:HEM606
|
2.1
|
35.7
|
1.0
|
|
ND
|
N:HEM606
|
2.1
|
35.7
|
1.0
|
|
NA
|
N:HEM606
|
2.1
|
35.7
|
1.0
|
|
NE2
|
N:HIS226
|
2.4
|
37.7
|
1.0
|
|
CD2
|
N:HIS123
|
2.8
|
38.1
|
1.0
|
|
C4B
|
N:HEM606
|
3.0
|
35.7
|
1.0
|
|
C1C
|
N:HEM606
|
3.0
|
35.7
|
1.0
|
|
C1B
|
N:HEM606
|
3.0
|
35.7
|
1.0
|
|
C4C
|
N:HEM606
|
3.0
|
35.7
|
1.0
|
|
C4A
|
N:HEM606
|
3.1
|
35.7
|
1.0
|
|
C4D
|
N:HEM606
|
3.1
|
35.7
|
1.0
|
|
C1A
|
N:HEM606
|
3.1
|
35.7
|
1.0
|
|
C1D
|
N:HEM606
|
3.1
|
35.7
|
1.0
|
|
CE1
|
N:HIS123
|
3.1
|
38.1
|
1.0
|
|
CE1
|
N:HIS226
|
3.3
|
37.7
|
1.0
|
|
CHC
|
N:HEM606
|
3.4
|
35.7
|
1.0
|
|
CHB
|
N:HEM606
|
3.4
|
35.7
|
1.0
|
|
CD2
|
N:HIS226
|
3.4
|
37.7
|
1.0
|
|
CHA
|
N:HEM606
|
3.4
|
35.7
|
1.0
|
|
CHD
|
N:HEM606
|
3.4
|
35.7
|
1.0
|
|
CG
|
N:HIS123
|
4.0
|
38.1
|
1.0
|
|
ND1
|
N:HIS123
|
4.1
|
38.1
|
1.0
|
|
C3B
|
N:HEM606
|
4.2
|
35.7
|
1.0
|
|
C2B
|
N:HEM606
|
4.2
|
35.7
|
1.0
|
|
C2C
|
N:HEM606
|
4.2
|
35.7
|
1.0
|
|
C3C
|
N:HEM606
|
4.2
|
35.7
|
1.0
|
|
C3A
|
N:HEM606
|
4.3
|
35.7
|
1.0
|
|
C2A
|
N:HEM606
|
4.3
|
35.7
|
1.0
|
|
C3D
|
N:HEM606
|
4.3
|
35.7
|
1.0
|
|
C2D
|
N:HEM606
|
4.3
|
35.7
|
1.0
|
|
ND1
|
N:HIS226
|
4.4
|
37.7
|
1.0
|
|
CG
|
N:HIS226
|
4.5
|
37.7
|
1.0
|
|
Iron binding site 7 out
of 12 in 9fu0
Go back to
Iron Binding Sites List in 9fu0
Iron binding site 7 out
of 12 in the CIII2/Civ Respiratory Chain Supercomplex From Mycobacterium Smegmatis
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of CIII2/Civ Respiratory Chain Supercomplex From Mycobacterium Smegmatis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
R:Fe602
b:41.6
occ:1.00
|
FE
|
R:HEA602
|
0.0
|
41.6
|
1.0
|
|
NA
|
R:HEA602
|
2.0
|
41.6
|
1.0
|
|
NC
|
R:HEA602
|
2.1
|
41.6
|
1.0
|
|
ND
|
R:HEA602
|
2.1
|
41.6
|
1.0
|
|
NB
|
R:HEA602
|
2.1
|
41.6
|
1.0
|
|
NE2
|
R:HIS397
|
2.8
|
41.8
|
1.0
|
|
C4A
|
R:HEA602
|
3.0
|
41.6
|
1.0
|
|
C1A
|
R:HEA602
|
3.0
|
41.6
|
1.0
|
|
C1C
|
R:HEA602
|
3.1
|
41.6
|
1.0
|
|
C4B
|
R:HEA602
|
3.1
|
41.6
|
1.0
|
|
C4C
|
R:HEA602
|
3.1
|
41.6
|
1.0
|
|
C4D
|
R:HEA602
|
3.1
|
41.6
|
1.0
|
|
C1D
|
R:HEA602
|
3.1
|
41.6
|
1.0
|
|
C1B
|
R:HEA602
|
3.1
|
41.6
|
1.0
|
|
CHC
|
R:HEA602
|
3.4
|
41.6
|
1.0
|
|
CHD
|
R:HEA602
|
3.5
|
41.6
|
1.0
|
|
CHB
|
R:HEA602
|
3.5
|
41.6
|
1.0
|
|
CHA
|
R:HEA602
|
3.5
|
41.6
|
1.0
|
|
CE1
|
R:HIS397
|
3.7
|
41.8
|
1.0
|
|
CU
|
R:CU604
|
3.8
|
62.5
|
1.0
|
|
CD2
|
R:HIS397
|
3.9
|
41.8
|
1.0
|
|
C3A
|
R:HEA602
|
4.2
|
41.6
|
1.0
|
|
C2A
|
R:HEA602
|
4.3
|
41.6
|
1.0
|
|
C3C
|
R:HEA602
|
4.4
|
41.6
|
1.0
|
|
C3D
|
R:HEA602
|
4.4
|
41.6
|
1.0
|
|
C2C
|
R:HEA602
|
4.4
|
41.6
|
1.0
|
|
C3B
|
R:HEA602
|
4.4
|
41.6
|
1.0
|
|
C2D
|
R:HEA602
|
4.4
|
41.6
|
1.0
|
|
C2B
|
R:HEA602
|
4.4
|
41.6
|
1.0
|
|
CE1
|
R:HIS264
|
4.6
|
44.2
|
1.0
|
|
ND1
|
R:HIS397
|
4.9
|
41.8
|
1.0
|
|
Iron binding site 8 out
of 12 in 9fu0
Go back to
Iron Binding Sites List in 9fu0
Iron binding site 8 out
of 12 in the CIII2/Civ Respiratory Chain Supercomplex From Mycobacterium Smegmatis
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of CIII2/Civ Respiratory Chain Supercomplex From Mycobacterium Smegmatis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
R:Fe603
b:42.4
occ:1.00
|
FE
|
R:HEA603
|
0.0
|
42.4
|
1.0
|
|
NA
|
R:HEA603
|
2.0
|
42.4
|
1.0
|
|
ND
|
R:HEA603
|
2.1
|
42.4
|
1.0
|
|
NC
|
R:HEA603
|
2.1
|
42.4
|
1.0
|
|
NB
|
R:HEA603
|
2.1
|
42.4
|
1.0
|
|
NE2
|
R:HIS399
|
2.2
|
40.9
|
1.0
|
|
NE2
|
R:HIS86
|
2.2
|
41.8
|
1.0
|
|
C4A
|
R:HEA603
|
3.0
|
42.4
|
1.0
|
|
CE1
|
R:HIS399
|
3.0
|
40.9
|
1.0
|
|
C1A
|
R:HEA603
|
3.1
|
42.4
|
1.0
|
|
C4C
|
R:HEA603
|
3.1
|
42.4
|
1.0
|
|
C4D
|
R:HEA603
|
3.1
|
42.4
|
1.0
|
|
C1C
|
R:HEA603
|
3.1
|
42.4
|
1.0
|
|
C4B
|
R:HEA603
|
3.1
|
42.4
|
1.0
|
|
C1D
|
R:HEA603
|
3.1
|
42.4
|
1.0
|
|
CD2
|
R:HIS86
|
3.2
|
41.8
|
1.0
|
|
C1B
|
R:HEA603
|
3.2
|
42.4
|
1.0
|
|
CE1
|
R:HIS86
|
3.2
|
41.8
|
1.0
|
|
CD2
|
R:HIS399
|
3.3
|
40.9
|
1.0
|
|
CHC
|
R:HEA603
|
3.4
|
42.4
|
1.0
|
|
CHD
|
R:HEA603
|
3.4
|
42.4
|
1.0
|
|
CHA
|
R:HEA603
|
3.5
|
42.4
|
1.0
|
|
CHB
|
R:HEA603
|
3.5
|
42.4
|
1.0
|
|
C3A
|
R:HEA603
|
4.2
|
42.4
|
1.0
|
|
ND1
|
R:HIS399
|
4.2
|
40.9
|
1.0
|
|
C2A
|
R:HEA603
|
4.3
|
42.4
|
1.0
|
|
ND1
|
R:HIS86
|
4.3
|
41.8
|
1.0
|
|
CG
|
R:HIS86
|
4.3
|
41.8
|
1.0
|
|
CG
|
R:HIS399
|
4.4
|
40.9
|
1.0
|
|
C3C
|
R:HEA603
|
4.4
|
42.4
|
1.0
|
|
C3D
|
R:HEA603
|
4.4
|
42.4
|
1.0
|
|
C2C
|
R:HEA603
|
4.4
|
42.4
|
1.0
|
|
C2D
|
R:HEA603
|
4.4
|
42.4
|
1.0
|
|
C3B
|
R:HEA603
|
4.4
|
42.4
|
1.0
|
|
C2B
|
R:HEA603
|
4.4
|
42.4
|
1.0
|
|
CB
|
R:ALA59
|
5.0
|
43.2
|
1.0
|
|
Iron binding site 9 out
of 12 in 9fu0
Go back to
Iron Binding Sites List in 9fu0
Iron binding site 9 out
of 12 in the CIII2/Civ Respiratory Chain Supercomplex From Mycobacterium Smegmatis
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of CIII2/Civ Respiratory Chain Supercomplex From Mycobacterium Smegmatis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe601
b:41.6
occ:1.00
|
FE
|
H:HEM601
|
0.0
|
41.6
|
1.0
|
|
NB
|
H:HEM601
|
2.0
|
41.6
|
1.0
|
|
NC
|
H:HEM601
|
2.0
|
41.6
|
1.0
|
|
NA
|
H:HEM601
|
2.1
|
41.6
|
1.0
|
|
ND
|
H:HEM601
|
2.1
|
41.6
|
1.0
|
|
NE2
|
H:HIS109
|
2.2
|
39.7
|
1.0
|
|
NE2
|
H:HIS211
|
2.6
|
39.8
|
1.0
|
|
CE1
|
H:HIS109
|
2.8
|
39.7
|
1.0
|
|
CE1
|
H:HIS211
|
3.0
|
39.8
|
1.0
|
|
C1C
|
H:HEM601
|
3.0
|
41.6
|
1.0
|
|
C1A
|
H:HEM601
|
3.1
|
41.6
|
1.0
|
|
C4A
|
H:HEM601
|
3.1
|
41.6
|
1.0
|
|
C4B
|
H:HEM601
|
3.1
|
41.6
|
1.0
|
|
C1B
|
H:HEM601
|
3.1
|
41.6
|
1.0
|
|
C4D
|
H:HEM601
|
3.1
|
41.6
|
1.0
|
|
C1D
|
H:HEM601
|
3.1
|
41.6
|
1.0
|
|
C4C
|
H:HEM601
|
3.1
|
41.6
|
1.0
|
|
CHC
|
H:HEM601
|
3.4
|
41.6
|
1.0
|
|
CHA
|
H:HEM601
|
3.4
|
41.6
|
1.0
|
|
CHB
|
H:HEM601
|
3.4
|
41.6
|
1.0
|
|
CD2
|
H:HIS109
|
3.5
|
39.7
|
1.0
|
|
CHD
|
H:HEM601
|
3.5
|
41.6
|
1.0
|
|
CD2
|
H:HIS211
|
3.8
|
39.8
|
1.0
|
|
ND1
|
H:HIS109
|
4.1
|
39.7
|
1.0
|
|
C2A
|
H:HEM601
|
4.3
|
41.6
|
1.0
|
|
C3A
|
H:HEM601
|
4.3
|
41.6
|
1.0
|
|
C2C
|
H:HEM601
|
4.3
|
41.6
|
1.0
|
|
C2B
|
H:HEM601
|
4.3
|
41.6
|
1.0
|
|
ND1
|
H:HIS211
|
4.3
|
39.8
|
1.0
|
|
C3B
|
H:HEM601
|
4.3
|
41.6
|
1.0
|
|
C3D
|
H:HEM601
|
4.3
|
41.6
|
1.0
|
|
C2D
|
H:HEM601
|
4.3
|
41.6
|
1.0
|
|
C3C
|
H:HEM601
|
4.3
|
41.6
|
1.0
|
|
CG
|
H:HIS109
|
4.4
|
39.7
|
1.0
|
|
CG
|
H:HIS211
|
4.7
|
39.8
|
1.0
|
|
CD2
|
H:LEU53
|
4.9
|
38.4
|
1.0
|
|
CA
|
H:GLY158
|
4.9
|
44.8
|
1.0
|
|
OE1
|
H:GLU154
|
4.9
|
43.3
|
1.0
|
|
Iron binding site 10 out
of 12 in 9fu0
Go back to
Iron Binding Sites List in 9fu0
Iron binding site 10 out
of 12 in the CIII2/Civ Respiratory Chain Supercomplex From Mycobacterium Smegmatis
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of CIII2/Civ Respiratory Chain Supercomplex From Mycobacterium Smegmatis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe604
b:49.1
occ:1.00
|
FE
|
H:HEM604
|
0.0
|
49.1
|
1.0
|
|
NA
|
H:HEM604
|
2.0
|
49.1
|
1.0
|
|
NB
|
H:HEM604
|
2.1
|
49.1
|
1.0
|
|
NC
|
H:HEM604
|
2.1
|
49.1
|
1.0
|
|
ND
|
H:HEM604
|
2.1
|
49.1
|
1.0
|
|
NE2
|
H:HIS226
|
2.7
|
46.5
|
1.0
|
|
NE2
|
H:HIS123
|
2.7
|
50.1
|
1.0
|
|
C1B
|
H:HEM604
|
3.0
|
49.1
|
1.0
|
|
C1C
|
H:HEM604
|
3.0
|
49.1
|
1.0
|
|
C4B
|
H:HEM604
|
3.0
|
49.1
|
1.0
|
|
C4C
|
H:HEM604
|
3.0
|
49.1
|
1.0
|
|
C4A
|
H:HEM604
|
3.1
|
49.1
|
1.0
|
|
C1D
|
H:HEM604
|
3.1
|
49.1
|
1.0
|
|
C1A
|
H:HEM604
|
3.1
|
49.1
|
1.0
|
|
C4D
|
H:HEM604
|
3.1
|
49.1
|
1.0
|
|
CD2
|
H:HIS226
|
3.3
|
46.5
|
1.0
|
|
CD2
|
H:HIS123
|
3.3
|
50.1
|
1.0
|
|
CHC
|
H:HEM604
|
3.4
|
49.1
|
1.0
|
|
CHB
|
H:HEM604
|
3.4
|
49.1
|
1.0
|
|
CHD
|
H:HEM604
|
3.4
|
49.1
|
1.0
|
|
CHA
|
H:HEM604
|
3.4
|
49.1
|
1.0
|
|
CE1
|
H:HIS226
|
3.8
|
46.5
|
1.0
|
|
CE1
|
H:HIS123
|
3.8
|
50.1
|
1.0
|
|
C2B
|
H:HEM604
|
4.2
|
49.1
|
1.0
|
|
C2C
|
H:HEM604
|
4.2
|
49.1
|
1.0
|
|
C3B
|
H:HEM604
|
4.2
|
49.1
|
1.0
|
|
C3C
|
H:HEM604
|
4.2
|
49.1
|
1.0
|
|
C3A
|
H:HEM604
|
4.3
|
49.1
|
1.0
|
|
C2A
|
H:HEM604
|
4.3
|
49.1
|
1.0
|
|
C2D
|
H:HEM604
|
4.3
|
49.1
|
1.0
|
|
C3D
|
H:HEM604
|
4.3
|
49.1
|
1.0
|
|
CG
|
H:HIS123
|
4.4
|
50.1
|
1.0
|
|
CG
|
H:HIS226
|
4.5
|
46.5
|
1.0
|
|
ND1
|
H:HIS123
|
4.7
|
50.1
|
1.0
|
|
ND1
|
H:HIS226
|
4.7
|
46.5
|
1.0
|
|
Reference:
T.Kovalova,
S.Krol,
A.Gamiz-Hernandez,
D.Sjostrand,
V.Kaila,
P.Brzezinski,
M.Hogbom.
Inhibition Mechanism of Potential Anti-Tuberculosis Compound Lansoprazole Sulfide To Be Published.
Page generated: Wed Nov 27 17:48:29 2024
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