Iron in PDB 9j2f: Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida

The structure of Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida also contains other interesting chemical elements:

Magnesium

(Mg)

39 atoms

The binding sites of Iron atom in the Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida (pdb code 9j2f). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 5 binding sites of Iron where determined in the Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida, PDB code: 9j2f:
Jump to Iron binding site number: 1; 2; 3; 4; 5;

Iron binding site 1 out of 5 in the Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe401 b:34.6 occ:1.00 FE C:HEC401 0.0 34.6 1.0 ND C:HEC401 1.9 25.8 1.0 NE2 C:HIS91 1.9 28.3 1.0 NA C:HEC401 2.0 29.6 1.0 NC C:HEC401 2.1 26.0 1.0 NB C:HEC401 2.1 23.6 1.0 SD C:MET74 2.4 26.7 1.0 CE1 C:HIS91 2.8 26.4 1.0 C4D C:HEC401 2.9 24.2 1.0 C1D C:HEC401 2.9 23.4 1.0 CD2 C:HIS91 2.9 24.2 1.0 C1A C:HEC401 3.0 26.7 1.0 C4A C:HEC401 3.0 26.9 1.0 C4C C:HEC401 3.0 20.1 1.0 C1B C:HEC401 3.1 25.0 1.0 C4B C:HEC401 3.1 24.2 1.0 C1C C:HEC401 3.1 22.9 1.0 CHA C:HEC401 3.3 25.9 1.0 CHD C:HEC401 3.4 20.4 1.0 CE C:MET74 3.4 20.4 1.0 CHB C:HEC401 3.5 24.1 1.0 CG C:MET74 3.5 25.5 1.0 CHC C:HEC401 3.5 22.8 1.0 ND1 C:HIS91 3.9 26.8 1.0 CG C:HIS91 4.0 24.1 1.0 C3D C:HEC401 4.1 25.2 1.0 C2D C:HEC401 4.1 24.4 1.0 C2A C:HEC401 4.2 30.8 1.0 C3A C:HEC401 4.2 32.1 1.0 C3C C:HEC401 4.3 23.4 1.0 C2C C:HEC401 4.3 22.6 1.0 C2B C:HEC401 4.3 24.6 1.0 CB C:MET74 4.3 23.0 1.0 C3B C:HEC401 4.3 23.6 1.0

Iron binding site 2 out of 5 in the Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe402 b:21.8 occ:1.00 FE C:HEC402 0.0 21.8 1.0 ND C:HEC402 1.9 12.1 1.0 NA C:HEC402 2.0 10.8 1.0 NC C:HEC402 2.1 10.5 1.0 NB C:HEC402 2.1 12.0 1.0 NE2 C:HIS136 2.2 8.8 1.0 SD C:MET110 2.4 12.6 1.0 C4D C:HEC402 2.9 10.6 1.0 C1D C:HEC402 2.9 9.4 1.0 C1A C:HEC402 3.0 11.4 1.0 C4C C:HEC402 3.0 9.2 1.0 CE1 C:HIS136 3.0 10.0 1.0 C4A C:HEC402 3.0 10.9 1.0 C1B C:HEC402 3.1 11.0 1.0 C4B C:HEC402 3.1 10.7 1.0 C1C C:HEC402 3.1 10.4 1.0 CD2 C:HIS136 3.2 10.3 1.0 CHA C:HEC402 3.3 11.4 1.0 CHD C:HEC402 3.4 7.5 1.0 CG C:MET110 3.4 12.4 1.0 CE C:MET110 3.4 9.1 1.0 CHB C:HEC402 3.5 10.0 1.0 CHC C:HEC402 3.5 10.0 1.0 C3D C:HEC402 4.1 11.7 1.0 C2D C:HEC402 4.1 10.5 1.0 C2A C:HEC402 4.2 11.7 1.0 CB C:MET110 4.2 11.7 1.0 ND1 C:HIS136 4.2 11.2 1.0 C3A C:HEC402 4.2 13.2 1.0 C3C C:HEC402 4.3 8.7 1.0 C2C C:HEC402 4.3 9.3 1.0 C2B C:HEC402 4.3 13.2 1.0 CG C:HIS136 4.3 10.2 1.0 C3B C:HEC402 4.4 11.5 1.0 CG C:PRO142 4.9 9.9 1.0

Iron binding site 3 out of 5 in the Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe403 b:9.5 occ:1.00 FE C:HEC403 0.0 9.5 1.0 ND C:HEC403 1.9 3.2 1.0 NA C:HEC403 2.0 2.6 1.0 NE2 C:HIS246 2.1 2.1 1.0 NC C:HEC403 2.1 2.2 1.0 NB C:HEC403 2.1 2.1 1.0 SD C:MET231 2.5 2.8 1.0 C4D C:HEC403 2.9 2.4 1.0 C1D C:HEC403 2.9 2.0 1.0 C1A C:HEC403 2.9 1.9 1.0 CD2 C:HIS246 3.0 2.1 1.0 C4C C:HEC403 3.0 1.9 1.0 CE1 C:HIS246 3.1 2.1 1.0 C4A C:HEC403 3.1 1.9 1.0 C1B C:HEC403 3.1 1.6 1.0 C4B C:HEC403 3.1 1.7 1.0 C1C C:HEC403 3.1 2.2 1.0 CHA C:HEC403 3.3 2.0 1.0 CHD C:HEC403 3.4 1.9 1.0 CG C:MET231 3.4 2.1 1.0 CHB C:HEC403 3.5 1.6 1.0 CE C:MET231 3.5 1.7 1.0 CHC C:HEC403 3.5 1.8 1.0 C3D C:HEC403 4.1 3.0 1.0 C2D C:HEC403 4.1 2.8 1.0 ND1 C:HIS246 4.1 2.7 1.0 C2A C:HEC403 4.2 2.0 1.0 CG C:HIS246 4.2 2.6 1.0 C3A C:HEC403 4.2 2.1 1.0 C3C C:HEC403 4.3 2.7 1.0 C2C C:HEC403 4.3 2.0 1.0 CB C:MET231 4.3 2.1 1.0 C2B C:HEC403 4.3 1.9 1.0 C3B C:HEC403 4.3 2.2 1.0

Iron binding site 4 out of 5 in the Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe404 b:13.8 occ:1.00 FE C:HEC404 0.0 13.8 1.0 ND C:HEC404 1.9 6.9 1.0 NA C:HEC404 2.0 6.3 1.0 NE2 C:HIS307 2.0 5.6 1.0 NE2 C:HIS124 2.0 5.6 1.0 NC C:HEC404 2.1 6.3 1.0 NB C:HEC404 2.1 5.6 1.0 CE1 C:HIS124 2.8 4.8 1.0 C4D C:HEC404 2.9 7.0 1.0 C1D C:HEC404 2.9 5.8 1.0 CE1 C:HIS307 2.9 5.2 1.0 C1A C:HEC404 2.9 5.5 1.0 C4C C:HEC404 3.0 4.9 1.0 CD2 C:HIS307 3.0 4.7 1.0 C4A C:HEC404 3.1 4.8 1.0 C4B C:HEC404 3.1 4.8 1.0 C1B C:HEC404 3.1 5.2 1.0 C1C C:HEC404 3.1 5.5 1.0 CD2 C:HIS124 3.2 4.8 1.0 CHA C:HEC404 3.3 6.8 1.0 CHD C:HEC404 3.4 5.7 1.0 CHB C:HEC404 3.5 5.2 1.0 CHC C:HEC404 3.5 4.4 1.0 ND1 C:HIS124 3.9 6.7 1.0 ND1 C:HIS307 4.1 6.8 1.0 C3D C:HEC404 4.1 9.2 1.0 C2D C:HEC404 4.1 7.9 1.0 CG C:HIS307 4.1 6.3 1.0 C2A C:HEC404 4.2 6.3 1.0 CG C:HIS124 4.2 6.6 1.0 C3A C:HEC404 4.2 5.6 1.0 C3C C:HEC404 4.3 6.2 1.0 C2C C:HEC404 4.3 5.6 1.0 C2B C:HEC404 4.3 5.2 1.0 C3B C:HEC404 4.3 4.7 1.0 CD C:PRO313 5.0 8.3 1.0

Iron binding site 5 out of 5 in the Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of Photosynthetic LH1-Rc Complex From the Purple Bacterium Blastochloris Tepida within 5.0Å range: probe atom residue distance (Å) B Occ M:Fe401 b:16.2 occ:1.00 OE2 M:GLU233 2.1 10.7 1.0 OE1 M:GLU233 2.2 9.5 1.0 NE2 L:HIS190 2.2 7.1 1.0 NE2 L:HIS230 2.2 6.8 1.0 NE2 M:HIS265 2.3 6.1 1.0 NE2 M:HIS218 2.3 6.1 1.0 CD M:GLU233 2.4 10.1 1.0 CE1 L:HIS190 3.0 6.7 1.0 CE1 M:HIS265 3.0 5.6 1.0 CE1 L:HIS230 3.1 7.7 1.0 CE1 M:HIS218 3.2 5.5 1.0 CD2 L:HIS230 3.3 5.5 1.0 CD2 M:HIS218 3.3 4.3 1.0 CD2 L:HIS190 3.3 5.4 1.0 CD2 M:HIS265 3.4 5.2 1.0 CG M:GLU233 3.9 11.8 1.0 ND1 L:HIS190 4.2 7.0 1.0 ND1 M:HIS265 4.2 6.3 1.0 ND1 L:HIS230 4.3 7.5 1.0 ND1 M:HIS218 4.3 4.7 1.0 CG L:HIS230 4.4 6.3 1.0 CG L:HIS190 4.4 6.6 1.0 CG M:HIS218 4.4 5.3 1.0 CG M:HIS265 4.4 6.6 1.0 CG1 L:ILE194 4.5 8.6 1.0 CG1 M:ILE222 4.5 7.7 1.0 O M:HOH558 4.8 18.6 1.0 CB M:GLU233 4.8 11.9 1.0 CD1 L:ILE194 5.0 11.1 1.0

Y.Kimura, R.Kanno, K.Mori, Y.Matsuda, R.Seto, S.Takenaka, H.Mino, T.Ohkubo, M.Honda, Y.C.Sasaki, J.Kishikawa, K.Mitsuoka, K.Mio, M.Hall, E.R.Purba, T.Mochizuki, A.Mizoguchi, B.M.Humbel, M.T.Madigan, Z.-Y.Wang-Otomo, K.Tani. The Thermal-Stable LH1-Rc Complex of A Hot Spring Purple Bacterium Powers Photosynthesis with Extremely Low-Energy Near-Infrared Light. To Be Published.