Iron in PDB 11zk: Cryo-Em Structure of Nifi Free Nitrogenase Mofe Protein From Methanosarcina Acetivorans

All present enzymatic activity of Cryo-Em Structure of Nifi Free Nitrogenase Mofe Protein From Methanosarcina Acetivorans:
1.18.6.1;

The structure of Cryo-Em Structure of Nifi Free Nitrogenase Mofe Protein From Methanosarcina Acetivorans also contains other interesting chemical elements:

Molybdenum

(Mo)

1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 15;

Binding sites:

The binding sites of Iron atom in the Cryo-Em Structure of Nifi Free Nitrogenase Mofe Protein From Methanosarcina Acetivorans (pdb code 11zk). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 15 binding sites of Iron where determined in the Cryo-Em Structure of Nifi Free Nitrogenase Mofe Protein From Methanosarcina Acetivorans, PDB code: 11zk:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 15 in the Cryo-Em Structure of Nifi Free Nitrogenase Mofe Protein From Methanosarcina Acetivorans


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Nifi Free Nitrogenase Mofe Protein From Methanosarcina Acetivorans within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:118.9 occ:1.00 FE1 A:ICS601 0.0 118.9 1.0 S2A A:ICS601 2.3 170.9 1.0 S4A A:ICS601 2.3 171.5 1.0 S1A A:ICS601 2.3 170.3 1.0 SG A:CYS267 2.3 119.1 1.0 FE3 A:ICS601 2.6 171.9 1.0 FE4 A:ICS601 2.7 196.3 1.0 FE2 A:ICS601 2.7 180.6 1.0 CX A:ICS601 3.5 183.9 1.0 CB A:CYS267 4.0 122.3 1.0 CG A:ARG269 4.1 140.8 1.0 CB A:ARG269 4.1 141.4 1.0 OG A:SER270 4.5 138.8 1.0 S5A A:ICS601 4.8 162.8 1.0 S3A A:ICS601 4.8 184.9 1.0 N A:ARG269 4.9 135.1 1.0 S2B A:ICS601 4.9 200.4 1.0

Iron binding site 2 out of 15 in the Cryo-Em Structure of Nifi Free Nitrogenase Mofe Protein From Methanosarcina Acetivorans


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Nifi Free Nitrogenase Mofe Protein From Methanosarcina Acetivorans within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:180.6 occ:1.00 FE2 A:ICS601 0.0 180.6 1.0 CX A:ICS601 2.0 183.9 1.0 S2B A:ICS601 2.2 200.4 1.0 S1A A:ICS601 2.2 170.3 1.0 S2A A:ICS601 2.2 170.9 1.0 FE6 A:ICS601 2.6 202.2 1.0 FE3 A:ICS601 2.6 171.9 1.0 FE4 A:ICS601 2.7 196.3 1.0 FE1 A:ICS601 2.7 118.9 1.0 FE5 A:ICS601 3.7 203.4 1.0 FE7 A:ICS601 3.7 186.6 1.0 S4A A:ICS601 3.9 171.5 1.0 S3B A:ICS601 4.2 196.2 1.0 S1B A:ICS601 4.2 197.5 1.0 S5A A:ICS601 4.5 162.8 1.0 S3A A:ICS601 4.5 184.9 1.0 CB A:ARG269 4.9 141.4 1.0 OG A:SER270 5.0 138.8 1.0 SG A:CYS267 5.0 119.1 1.0

Iron binding site 3 out of 15 in the Cryo-Em Structure of Nifi Free Nitrogenase Mofe Protein From Methanosarcina Acetivorans


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of Nifi Free Nitrogenase Mofe Protein From Methanosarcina Acetivorans within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:171.9 occ:1.00 FE3 A:ICS601 0.0 171.9 1.0 CX A:ICS601 2.0 183.9 1.0 S5A A:ICS601 2.2 162.8 1.0 S4A A:ICS601 2.2 171.5 1.0 S2A A:ICS601 2.3 170.9 1.0 FE7 A:ICS601 2.6 186.6 1.0 FE4 A:ICS601 2.6 196.3 1.0 FE2 A:ICS601 2.6 180.6 1.0 FE1 A:ICS601 2.6 118.9 1.0 FE6 A:ICS601 3.7 202.2 1.0 FE5 A:ICS601 3.7 203.4 1.0 S1A A:ICS601 3.8 170.3 1.0 CD2 A:TYR221 4.0 139.1 1.0 CE2 A:TYR221 4.1 141.2 1.0 S4B A:ICS601 4.2 185.1 1.0 S3B A:ICS601 4.2 196.2 1.0 S2B A:ICS601 4.4 200.4 1.0 SG A:CYS267 4.4 119.1 1.0 S3A A:ICS601 4.5 184.9 1.0 NH2 A:ARG352 4.7 146.7 1.0 CG1 A:VAL66 4.8 146.9 1.0

Iron binding site 4 out of 15 in the Cryo-Em Structure of Nifi Free Nitrogenase Mofe Protein From Methanosarcina Acetivorans


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of Nifi Free Nitrogenase Mofe Protein From Methanosarcina Acetivorans within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:196.3 occ:1.00 FE4 A:ICS601 0.0 196.3 1.0 CX A:ICS601 2.0 183.9 1.0 S3A A:ICS601 2.2 184.9 1.0 S1A A:ICS601 2.3 170.3 1.0 S4A A:ICS601 2.3 171.5 1.0 FE5 A:ICS601 2.6 203.4 1.0 FE3 A:ICS601 2.6 171.9 1.0 FE2 A:ICS601 2.7 180.6 1.0 FE1 A:ICS601 2.7 118.9 1.0 FE7 A:ICS601 3.7 186.6 1.0 FE6 A:ICS601 3.7 202.2 1.0 S2A A:ICS601 3.8 170.9 1.0 S4B A:ICS601 4.2 185.1 1.0 S1B A:ICS601 4.3 197.5 1.0 S5A A:ICS601 4.4 162.8 1.0 S2B A:ICS601 4.5 200.4 1.0 N A:ARG352 4.5 136.7 1.0 CB A:ARG352 4.7 138.9 1.0 SG A:CYS267 4.8 119.1 1.0 NE A:ARG352 5.0 155.4 1.0

Iron binding site 5 out of 15 in the Cryo-Em Structure of Nifi Free Nitrogenase Mofe Protein From Methanosarcina Acetivorans


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em Structure of Nifi Free Nitrogenase Mofe Protein From Methanosarcina Acetivorans within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:203.4 occ:1.00 FE5 A:ICS601 0.0 203.4 1.0 CX A:ICS601 2.0 183.9 1.0 S3A A:ICS601 2.3 184.9 1.0 S4B A:ICS601 2.3 185.1 1.0 S1B A:ICS601 2.3 197.5 1.0 FE4 A:ICS601 2.6 196.3 1.0 FE7 A:ICS601 2.6 186.6 1.0 FE6 A:ICS601 2.6 202.2 1.0 MO1 A:ICS601 2.7 198.8 1.0 FE3 A:ICS601 3.7 171.9 1.0 FE2 A:ICS601 3.7 180.6 1.0 S3B A:ICS601 3.8 196.2 1.0 S1A A:ICS601 4.2 170.3 1.0 S4A A:ICS601 4.3 171.5 1.0 S5A A:ICS601 4.4 162.8 1.0 S2B A:ICS601 4.4 200.4 1.0

Iron binding site 6 out of 15 in the Cryo-Em Structure of Nifi Free Nitrogenase Mofe Protein From Methanosarcina Acetivorans


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryo-Em Structure of Nifi Free Nitrogenase Mofe Protein From Methanosarcina Acetivorans within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:202.2 occ:1.00 FE6 A:ICS601 0.0 202.2 1.0 CX A:ICS601 2.0 183.9 1.0 S2B A:ICS601 2.2 200.4 1.0 S3B A:ICS601 2.2 196.2 1.0 S1B A:ICS601 2.2 197.5 1.0 FE2 A:ICS601 2.6 180.6 1.0 FE7 A:ICS601 2.6 186.6 1.0 FE5 A:ICS601 2.6 203.4 1.0 MO1 A:ICS601 2.7 198.8 1.0 FE3 A:ICS601 3.7 171.9 1.0 FE4 A:ICS601 3.7 196.3 1.0 S4B A:ICS601 3.8 185.1 1.0 S1A A:ICS601 4.3 170.3 1.0 S2A A:ICS601 4.3 170.9 1.0 S5A A:ICS601 4.4 162.8 1.0 S3A A:ICS601 4.5 184.9 1.0

Iron binding site 7 out of 15 in the Cryo-Em Structure of Nifi Free Nitrogenase Mofe Protein From Methanosarcina Acetivorans


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryo-Em Structure of Nifi Free Nitrogenase Mofe Protein From Methanosarcina Acetivorans within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:186.6 occ:1.00 FE7 A:ICS601 0.0 186.6 1.0 CX A:ICS601 2.0 183.9 1.0 S5A A:ICS601 2.2 162.8 1.0 S4B A:ICS601 2.2 185.1 1.0 S3B A:ICS601 2.3 196.2 1.0 FE6 A:ICS601 2.6 202.2 1.0 FE5 A:ICS601 2.6 203.4 1.0 FE3 A:ICS601 2.6 171.9 1.0 MO1 A:ICS601 2.7 198.8 1.0 FE4 A:ICS601 3.7 196.3 1.0 FE2 A:ICS601 3.7 180.6 1.0 S1B A:ICS601 3.8 197.5 1.0 S4A A:ICS601 4.3 171.5 1.0 S2A A:ICS601 4.3 170.9 1.0 S2B A:ICS601 4.4 200.4 1.0 S3A A:ICS601 4.5 184.9 1.0 CG1 A:VAL66 4.5 146.9 1.0 NH2 A:ARG352 4.8 146.7 1.0

Iron binding site 8 out of 15 in the Cryo-Em Structure of Nifi Free Nitrogenase Mofe Protein From Methanosarcina Acetivorans


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryo-Em Structure of Nifi Free Nitrogenase Mofe Protein From Methanosarcina Acetivorans within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe601 b:98.5 occ:1.00 FE1 D:CLF601 0.0 98.5 1.0 S2A D:CLF601 2.3 79.4 1.0 S3A D:CLF601 2.3 59.0 1.0 S1 D:CLF601 2.4 35.9 1.0 FE2 D:CLF601 2.5 63.4 1.0 SG A:CYS149 2.5 140.4 1.0 FE4 D:CLF601 2.6 43.9 1.0 FE3 D:CLF601 2.8 51.9 1.0 CB A:CYS149 3.7 138.7 1.0 S4A D:CLF601 3.8 56.1 1.0 N A:CYS149 3.9 137.9 1.0 SG D:CYS106 4.2 110.6 1.0 FE8 D:CLF601 4.4 38.2 1.0 CA A:CYS149 4.4 139.8 1.0 CB A:THR148 4.4 136.1 1.0 CD A:PRO150 4.5 130.2 1.0 SG A:CYS84 4.5 113.5 1.0 FE5 D:CLF601 4.7 57.2 1.0 FE6 D:CLF601 4.9 34.7 1.0 C A:THR148 4.9 139.1 1.0 CA A:THR148 5.0 138.9 1.0

Iron binding site 9 out of 15 in the Cryo-Em Structure of Nifi Free Nitrogenase Mofe Protein From Methanosarcina Acetivorans


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Cryo-Em Structure of Nifi Free Nitrogenase Mofe Protein From Methanosarcina Acetivorans within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe601 b:63.4 occ:1.00 FE2 D:CLF601 0.0 63.4 1.0 S4A D:CLF601 2.3 56.1 1.0 S2A D:CLF601 2.3 79.4 1.0 S1 D:CLF601 2.5 35.9 1.0 FE1 D:CLF601 2.5 98.5 1.0 FE4 D:CLF601 2.6 43.9 1.0 FE3 D:CLF601 2.7 51.9 1.0 FE8 D:CLF601 2.9 38.2 1.0 CB D:CYS48 3.5 110.2 1.0 N D:CYS48 3.7 112.5 1.0 CA D:CYS48 3.7 109.1 1.0 S3A D:CLF601 3.8 59.0 1.0 FE5 D:CLF601 3.9 57.2 1.0 S4B D:CLF601 4.0 57.6 1.0 FE6 D:CLF601 4.5 34.7 1.0 SG A:CYS149 4.6 140.4 1.0 C D:GLY47 4.6 113.1 1.0 SG D:CYS48 4.6 90.7 1.0 OG D:SER45 4.7 113.7 1.0 SG D:CYS106 4.8 110.6 1.0 CE2 D:TYR51 4.9 122.0 1.0

Iron binding site 10 out of 15 in the Cryo-Em Structure of Nifi Free Nitrogenase Mofe Protein From Methanosarcina Acetivorans


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Cryo-Em Structure of Nifi Free Nitrogenase Mofe Protein From Methanosarcina Acetivorans within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe601 b:51.9 occ:1.00 FE3 D:CLF601 0.0 51.9 1.0 S4A D:CLF601 2.3 56.1 1.0 S2A D:CLF601 2.3 79.4 1.0 S3A D:CLF601 2.3 59.0 1.0 FE4 D:CLF601 2.7 43.9 1.0 FE2 D:CLF601 2.7 63.4 1.0 FE1 D:CLF601 2.8 98.5 1.0 CB A:PHE60 3.4 137.4 1.0 CE2 D:TYR51 4.1 122.0 1.0 N A:PHE60 4.2 143.2 1.0 S1 D:CLF601 4.2 35.9 1.0 CG A:PHE60 4.4 130.2 1.0 CA A:PHE60 4.4 144.7 1.0 SG A:CYS149 4.5 140.4 1.0 N A:ALA59 4.7 145.2 1.0 CD2 D:TYR51 4.8 114.3 1.0 OH D:TYR51 4.8 138.3 1.0 CD2 A:PHE60 4.9 125.0 1.0 CZ D:TYR51 4.9 127.5 1.0

R.Kashyap, E.Antony. Cryo-Em Structure of Trimeric Nitrogenase Mofe Protein From Methanosarcina Acetivorans To Be Published.