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Iron in PDB 12cl: Crystal Structure of Canine Myeloperoxidase Inhibited By Spin From Staphylococcus Delphini

Enzymatic activity of Crystal Structure of Canine Myeloperoxidase Inhibited By Spin From Staphylococcus Delphini

All present enzymatic activity of Crystal Structure of Canine Myeloperoxidase Inhibited By Spin From Staphylococcus Delphini:
1.11.2.2;

Protein crystallography data

The structure of Crystal Structure of Canine Myeloperoxidase Inhibited By Spin From Staphylococcus Delphini, PDB code: 12cl was solved by S.Fatehi, B.V.Geisbrecht, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.42 / 2.10
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 132.697, 145.377, 107.61, 90, 114.85, 90
R / Rfree (%) 16.7 / 19.9

Other elements in 12cl:

The structure of Crystal Structure of Canine Myeloperoxidase Inhibited By Spin From Staphylococcus Delphini also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Calcium (Ca) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Canine Myeloperoxidase Inhibited By Spin From Staphylococcus Delphini (pdb code 12cl). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Canine Myeloperoxidase Inhibited By Spin From Staphylococcus Delphini, PDB code: 12cl:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 12cl

Go back to Iron Binding Sites List in 12cl
Iron binding site 1 out of 2 in the Crystal Structure of Canine Myeloperoxidase Inhibited By Spin From Staphylococcus Delphini


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Canine Myeloperoxidase Inhibited By Spin From Staphylococcus Delphini within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe802

b:26.9
occ:1.00
FE A:HEM802 0.0 26.9 1.0
ND A:HEM802 2.1 21.0 1.0
NB A:HEM802 2.1 31.4 1.0
NA A:HEM802 2.1 29.0 1.0
NE2 A:HIS502 2.1 26.2 1.0
NC A:HEM802 2.1 27.6 1.0
C4D A:HEM802 3.1 24.7 1.0
CD2 A:HIS502 3.1 26.4 1.0
O A:HOH1118 3.1 35.3 1.0
C1A A:HEM802 3.1 29.2 1.0
C1C A:HEM802 3.1 27.5 1.0
C4B A:HEM802 3.1 30.4 1.0
C4C A:HEM802 3.1 26.6 1.0
C1B A:HEM802 3.1 30.7 1.0
C1D A:HEM802 3.1 26.1 1.0
C4A A:HEM802 3.1 26.9 1.0
CE1 A:HIS502 3.1 24.4 1.0
CHA A:HEM802 3.4 25.8 1.0
CHC A:HEM802 3.4 28.2 1.0
CHB A:HEM802 3.5 30.6 1.0
CHD A:HEM802 3.5 21.1 1.0
CG A:HIS502 4.2 25.6 1.0
ND1 A:HIS502 4.2 25.1 1.0
C2C A:HEM802 4.3 26.6 1.0
C3D A:HEM802 4.3 25.4 1.0
C3C A:HEM802 4.3 26.1 1.0
C2A A:HEM802 4.3 30.9 1.0
C3B A:HEM802 4.3 34.9 1.0
C2D A:HEM802 4.3 25.3 1.0
C3A A:HEM802 4.3 28.9 1.0
C2B A:HEM802 4.3 35.4 1.0
CD2 A:LEU583 4.5 27.7 1.0
NE2 A:GLN257 4.9 30.3 1.0

Iron binding site 2 out of 2 in 12cl

Go back to Iron Binding Sites List in 12cl
Iron binding site 2 out of 2 in the Crystal Structure of Canine Myeloperoxidase Inhibited By Spin From Staphylococcus Delphini


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Canine Myeloperoxidase Inhibited By Spin From Staphylococcus Delphini within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe807

b:29.6
occ:1.00
FE B:HEM807 0.0 29.6 1.0
ND B:HEM807 2.1 27.9 1.0
NA B:HEM807 2.1 31.2 1.0
NC B:HEM807 2.1 26.1 1.0
NB B:HEM807 2.1 31.9 1.0
NE2 B:HIS502 2.2 26.6 1.0
O B:HOH1056 2.8 34.6 1.0
C1A B:HEM807 3.1 30.3 1.0
C4D B:HEM807 3.1 27.2 1.0
C1D B:HEM807 3.1 26.7 1.0
C1C B:HEM807 3.1 29.7 1.0
C4A B:HEM807 3.1 33.4 1.0
CD2 B:HIS502 3.1 29.5 1.0
C4C B:HEM807 3.1 29.3 1.0
C4B B:HEM807 3.1 28.0 1.0
C1B B:HEM807 3.1 32.9 1.0
CE1 B:HIS502 3.2 25.7 1.0
CHA B:HEM807 3.4 26.9 1.0
CHD B:HEM807 3.4 26.0 1.0
CHC B:HEM807 3.5 29.8 1.0
CHB B:HEM807 3.5 32.2 1.0
C2C B:HEM807 4.3 29.4 1.0
C2A B:HEM807 4.3 31.8 1.0
CG B:HIS502 4.3 27.5 1.0
C3C B:HEM807 4.3 28.1 1.0
C3A B:HEM807 4.3 29.7 1.0
C2D B:HEM807 4.3 26.4 1.0
C3D B:HEM807 4.3 26.1 1.0
ND1 B:HIS502 4.3 30.4 1.0
C3B B:HEM807 4.3 33.7 1.0
C2B B:HEM807 4.3 35.4 1.0
CD2 B:LEU583 4.5 32.4 1.0

Reference:

S.Fatehi, B.V.Geisbrecht. Staphylococcal Peroxidase Inhibitor: Structure/Function Studies on Host-Species Specificity To Be Published.
Page generated: Sun Oct 4 08:33:18 2026

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