Iron in PDB 21fy: The Cryo-Em Structure of Iscs-Ppta Complex

All present enzymatic activity of The Cryo-Em Structure of Iscs-Ppta Complex:
2.8.1.7;

The binding sites of Iron atom in the The Cryo-Em Structure of Iscs-Ppta Complex (pdb code 21fy). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the The Cryo-Em Structure of Iscs-Ppta Complex, PDB code: 21fy:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in the The Cryo-Em Structure of Iscs-Ppta Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Cryo-Em Structure of Iscs-Ppta Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe301 b:126.2 occ:1.00 FE1 C:SF4301 0.0 126.2 1.0 SG C:CYS176 2.3 107.8 1.0 S4 C:SF4301 2.3 113.8 1.0 S2 C:SF4301 2.3 99.4 1.0 S3 C:SF4301 2.3 91.0 1.0 FE2 C:SF4301 2.7 109.3 1.0 FE4 C:SF4301 2.7 91.3 1.0 FE3 C:SF4301 2.7 91.9 1.0 CB C:CYS176 3.0 101.3 1.0 CA C:CYS176 3.4 100.3 1.0 N C:VAL177 3.7 93.9 1.0 S1 C:SF4301 3.9 101.6 1.0 SG C:CYS237 3.9 99.8 1.0 C C:CYS176 4.0 100.4 1.0 CB C:CYS173 4.3 101.8 1.0 CG2 C:VAL177 4.4 96.0 1.0 N C:LYS178 4.6 102.5 1.0 N C:CYS176 4.6 99.8 1.0 CB C:CYS237 4.7 106.2 1.0 SG C:CYS92 4.8 80.0 1.0 SG C:CYS173 4.8 97.3 1.0 CA C:VAL177 4.9 93.9 1.0

Iron binding site 2 out of 8 in the The Cryo-Em Structure of Iscs-Ppta Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The Cryo-Em Structure of Iscs-Ppta Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe301 b:109.3 occ:1.00 FE2 C:SF4301 0.0 109.3 1.0 SG C:CYS237 2.3 99.8 1.0 S3 C:SF4301 2.3 91.0 1.0 S4 C:SF4301 2.3 113.8 1.0 S1 C:SF4301 2.3 101.6 1.0 FE1 C:SF4301 2.7 126.2 1.0 FE3 C:SF4301 2.7 91.9 1.0 FE4 C:SF4301 2.7 91.3 1.0 NZ C:LYS97 2.8 83.9 1.0 S2 C:SF4301 3.9 99.4 1.0 CB C:CYS237 3.9 106.2 1.0 OG1 C:THR93 4.0 85.0 1.0 CE C:LYS97 4.0 82.4 1.0 SG C:CYS176 4.5 107.8 1.0 SG C:CYS173 4.6 97.3 1.0 O C:CYS237 4.6 108.2 1.0 SG C:CYS92 4.8 80.0 1.0 CA C:CYS237 4.8 109.7 1.0 NZ C:LYS178 4.9 106.9 1.0 CB C:CYS173 4.9 101.8 1.0

Iron binding site 3 out of 8 in the The Cryo-Em Structure of Iscs-Ppta Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of The Cryo-Em Structure of Iscs-Ppta Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe301 b:91.9 occ:1.00 FE3 C:SF4301 0.0 91.9 1.0 SG C:CYS173 2.3 97.3 1.0 S4 C:SF4301 2.3 113.8 1.0 S1 C:SF4301 2.3 101.6 1.0 S2 C:SF4301 2.3 99.4 1.0 CB C:CYS173 2.6 101.8 1.0 FE2 C:SF4301 2.7 109.3 1.0 FE4 C:SF4301 2.7 91.3 1.0 FE1 C:SF4301 2.7 126.2 1.0 S3 C:SF4301 3.9 91.0 1.0 CA C:CYS173 4.1 99.5 1.0 N C:CYS173 4.5 98.9 1.0 NZ C:LYS97 4.6 83.9 1.0 O C:ASN172 4.6 106.8 1.0 SG C:CYS237 4.6 99.8 1.0 CB C:CYS176 4.7 101.3 1.0 C C:ASN172 4.7 104.3 1.0 SG C:CYS176 4.8 107.8 1.0 SG C:CYS92 4.8 80.0 1.0 CA C:CYS176 4.8 100.3 1.0

Iron binding site 4 out of 8 in the The Cryo-Em Structure of Iscs-Ppta Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of The Cryo-Em Structure of Iscs-Ppta Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe301 b:91.3 occ:1.00 FE4 C:SF4301 0.0 91.3 1.0 SG C:CYS92 2.3 80.0 1.0 S2 C:SF4301 2.3 99.4 1.0 S3 C:SF4301 2.3 91.0 1.0 S1 C:SF4301 2.3 101.6 1.0 FE2 C:SF4301 2.7 109.3 1.0 FE1 C:SF4301 2.7 126.2 1.0 FE3 C:SF4301 2.7 91.9 1.0 OG1 C:THR93 3.8 85.0 1.0 S4 C:SF4301 3.9 113.8 1.0 CB C:CYS92 4.0 82.7 1.0 N C:THR93 4.4 77.9 1.0 NZ C:LYS97 4.4 83.9 1.0 CG2 C:VAL177 4.5 96.0 1.0 CA C:THR93 4.7 79.2 1.0 C C:CYS92 4.7 78.8 1.0 SG C:CYS173 4.8 97.3 1.0 SG C:CYS237 4.8 99.8 1.0 CB C:THR93 4.9 79.6 1.0 SG C:CYS176 4.9 107.8 1.0 CG2 C:ILE75 5.0 89.1 1.0 CA C:CYS92 5.0 81.1 1.0

Iron binding site 5 out of 8 in the The Cryo-Em Structure of Iscs-Ppta Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of The Cryo-Em Structure of Iscs-Ppta Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe301 b:121.0 occ:1.00 FE1 D:SF4301 0.0 121.0 1.0 SG D:CYS176 2.3 103.9 1.0 S4 D:SF4301 2.3 106.8 1.0 S2 D:SF4301 2.3 95.0 1.0 S3 D:SF4301 2.3 84.5 1.0 FE2 D:SF4301 2.7 87.6 1.0 FE4 D:SF4301 2.7 79.0 1.0 FE3 D:SF4301 2.7 92.4 1.0 CB D:CYS176 3.1 97.1 1.0 CA D:CYS176 3.5 95.8 1.0 N D:VAL177 3.7 89.8 1.0 SG D:CYS237 3.8 100.9 1.0 S1 D:SF4301 3.9 96.2 1.0 C D:CYS176 4.1 96.2 1.0 CB D:CYS173 4.3 96.5 1.0 CG2 D:VAL177 4.4 92.8 1.0 N D:LYS178 4.6 104.8 1.0 CB D:CYS237 4.7 108.0 1.0 SG D:CYS173 4.8 87.4 1.0 CA D:VAL177 4.8 90.8 1.0 N D:CYS176 4.8 96.2 1.0 SG D:CYS92 4.8 77.1 1.0 CB D:LYS178 4.9 107.9 1.0

Iron binding site 6 out of 8 in the The Cryo-Em Structure of Iscs-Ppta Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of The Cryo-Em Structure of Iscs-Ppta Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe301 b:87.6 occ:1.00 FE2 D:SF4301 0.0 87.6 1.0 SG D:CYS237 2.3 100.9 1.0 S3 D:SF4301 2.3 84.5 1.0 S4 D:SF4301 2.3 106.8 1.0 S1 D:SF4301 2.3 96.2 1.0 FE1 D:SF4301 2.7 121.0 1.0 FE4 D:SF4301 2.7 79.0 1.0 FE3 D:SF4301 2.7 92.4 1.0 NZ D:LYS97 2.9 76.8 1.0 OG1 D:THR93 3.6 80.9 1.0 S2 D:SF4301 3.9 95.0 1.0 CB D:CYS237 3.9 108.0 1.0 CE D:LYS97 4.1 75.0 1.0 O D:CYS237 4.5 110.0 1.0 SG D:CYS176 4.6 103.9 1.0 SG D:CYS173 4.7 87.4 1.0 SG D:CYS92 4.7 77.1 1.0 CA D:CYS237 4.8 111.0 1.0 CB D:THR93 4.9 74.8 1.0

Iron binding site 7 out of 8 in the The Cryo-Em Structure of Iscs-Ppta Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of The Cryo-Em Structure of Iscs-Ppta Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe301 b:92.4 occ:1.00 FE3 D:SF4301 0.0 92.4 1.0 SG D:CYS173 2.3 87.4 1.0 S4 D:SF4301 2.3 106.8 1.0 S1 D:SF4301 2.3 96.2 1.0 S2 D:SF4301 2.3 95.0 1.0 CB D:CYS173 2.7 96.5 1.0 FE4 D:SF4301 2.7 79.0 1.0 FE1 D:SF4301 2.7 121.0 1.0 FE2 D:SF4301 2.7 87.6 1.0 S3 D:SF4301 3.9 84.5 1.0 CA D:CYS173 4.2 96.0 1.0 SG D:CYS237 4.5 100.9 1.0 NZ D:LYS97 4.5 76.8 1.0 N D:CYS173 4.6 94.8 1.0 O D:ASN172 4.6 105.9 1.0 C D:ASN172 4.7 103.1 1.0 SG D:CYS176 4.7 103.9 1.0 SG D:CYS92 4.8 77.1 1.0 CB D:CYS176 4.8 97.1 1.0 CA D:CYS176 4.9 95.8 1.0

Iron binding site 8 out of 8 in the The Cryo-Em Structure of Iscs-Ppta Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of The Cryo-Em Structure of Iscs-Ppta Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe301 b:79.0 occ:1.00 FE4 D:SF4301 0.0 79.0 1.0 SG D:CYS92 2.3 77.1 1.0 S1 D:SF4301 2.3 96.2 1.0 S2 D:SF4301 2.3 95.0 1.0 S3 D:SF4301 2.3 84.5 1.0 FE2 D:SF4301 2.7 87.6 1.0 FE3 D:SF4301 2.7 92.4 1.0 FE1 D:SF4301 2.7 121.0 1.0 OG1 D:THR93 3.7 80.9 1.0 S4 D:SF4301 3.9 106.8 1.0 CB D:CYS92 4.0 77.6 1.0 CG2 D:VAL177 4.3 92.8 1.0 N D:THR93 4.3 71.8 1.0 CA D:THR93 4.6 72.5 1.0 NZ D:LYS97 4.6 76.8 1.0 C D:CYS92 4.7 73.1 1.0 CB D:THR93 4.8 74.8 1.0 SG D:CYS173 4.8 87.4 1.0 SG D:CYS237 4.9 100.9 1.0 CG2 D:ILE75 4.9 85.5 1.0 SG D:CYS176 4.9 103.9 1.0 CA D:CYS92 5.0 75.1 1.0

Y.Wang, Y.Wang. N/A N/A.