Iron in PDB 28pb: Crystal Structure of Cbca Periplasmic Domain From Geobacter Sulfurreducens
Protein crystallography data
The structure of Crystal Structure of Cbca Periplasmic Domain From Geobacter Sulfurreducens, PDB code: 28pb
was solved by
J.M.A.Antunes,
M.A.S.Correia,
T.Santos-Silva,
L.Morgado,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
72.75 /
1.91
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
69.436,
94.167,
114.175,
90,
90,
90
|
|
R / Rfree (%)
|
19.9 /
25.3
|
Other elements in 28pb:
The structure of Crystal Structure of Cbca Periplasmic Domain From Geobacter Sulfurreducens also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
14;
Binding sites:
The binding sites of Iron atom in the Crystal Structure of Cbca Periplasmic Domain From Geobacter Sulfurreducens
(pdb code 28pb). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 14 binding sites of Iron where determined in the
Crystal Structure of Cbca Periplasmic Domain From Geobacter Sulfurreducens, PDB code: 28pb:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 14 in 28pb
Go back to
Iron Binding Sites List in 28pb
Iron binding site 1 out
of 14 in the Crystal Structure of Cbca Periplasmic Domain From Geobacter Sulfurreducens
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of Cbca Periplasmic Domain From Geobacter Sulfurreducens within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe301
b:37.4
occ:1.00
|
FE
|
A:HEC301
|
0.0
|
37.4
|
1.0
|
|
ND
|
A:HEC301
|
1.9
|
39.2
|
1.0
|
|
NA
|
A:HEC301
|
2.0
|
36.8
|
1.0
|
|
NB
|
A:HEC301
|
2.0
|
34.2
|
1.0
|
|
NE2
|
A:HIS52
|
2.0
|
41.5
|
1.0
|
|
NE2
|
A:HIS12
|
2.0
|
37.1
|
1.0
|
|
NC
|
A:HEC301
|
2.1
|
39.8
|
1.0
|
|
CE1
|
A:HIS12
|
2.9
|
36.1
|
1.0
|
|
C1D
|
A:HEC301
|
3.0
|
44.7
|
1.0
|
|
C4D
|
A:HEC301
|
3.0
|
43.8
|
1.0
|
|
CE1
|
A:HIS52
|
3.0
|
42.7
|
1.0
|
|
C4A
|
A:HEC301
|
3.0
|
34.3
|
1.0
|
|
C1A
|
A:HEC301
|
3.0
|
38.0
|
1.0
|
|
C1B
|
A:HEC301
|
3.0
|
35.9
|
1.0
|
|
C4C
|
A:HEC301
|
3.0
|
40.6
|
1.0
|
|
CD2
|
A:HIS52
|
3.1
|
40.2
|
1.0
|
|
C4B
|
A:HEC301
|
3.1
|
37.3
|
1.0
|
|
CD2
|
A:HIS12
|
3.1
|
35.9
|
1.0
|
|
C1C
|
A:HEC301
|
3.1
|
39.5
|
1.0
|
|
CHD
|
A:HEC301
|
3.3
|
40.0
|
1.0
|
|
CHB
|
A:HEC301
|
3.3
|
35.8
|
1.0
|
|
CHA
|
A:HEC301
|
3.3
|
39.4
|
1.0
|
|
CHC
|
A:HEC301
|
3.5
|
38.6
|
1.0
|
|
ND1
|
A:HIS12
|
4.1
|
39.1
|
1.0
|
|
ND1
|
A:HIS52
|
4.1
|
43.4
|
1.0
|
|
C3D
|
A:HEC301
|
4.1
|
44.5
|
1.0
|
|
C2D
|
A:HEC301
|
4.1
|
45.2
|
1.0
|
|
C3A
|
A:HEC301
|
4.1
|
35.1
|
1.0
|
|
C2A
|
A:HEC301
|
4.2
|
37.3
|
1.0
|
|
CG
|
A:HIS52
|
4.2
|
45.6
|
1.0
|
|
CG
|
A:HIS12
|
4.2
|
42.8
|
1.0
|
|
C2B
|
A:HEC301
|
4.2
|
34.6
|
1.0
|
|
C3C
|
A:HEC301
|
4.2
|
40.5
|
1.0
|
|
C2C
|
A:HEC301
|
4.3
|
39.5
|
1.0
|
|
C3B
|
A:HEC301
|
4.3
|
36.2
|
1.0
|
|
CB
|
A:PRO53
|
4.9
|
46.3
|
1.0
|
|
Iron binding site 2 out
of 14 in 28pb
Go back to
Iron Binding Sites List in 28pb
Iron binding site 2 out
of 14 in the Crystal Structure of Cbca Periplasmic Domain From Geobacter Sulfurreducens
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of Cbca Periplasmic Domain From Geobacter Sulfurreducens within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe302
b:33.4
occ:1.00
|
FE
|
A:HEC302
|
0.0
|
33.4
|
1.0
|
|
NE2
|
A:HIS68
|
1.9
|
31.3
|
1.0
|
|
ND
|
A:HEC302
|
2.0
|
36.6
|
1.0
|
|
NB
|
A:HEC302
|
2.0
|
33.6
|
1.0
|
|
NA
|
A:HEC302
|
2.0
|
33.9
|
1.0
|
|
NE2
|
A:HIS36
|
2.1
|
29.7
|
1.0
|
|
NC
|
A:HEC302
|
2.1
|
36.5
|
1.0
|
|
CE1
|
A:HIS68
|
2.8
|
31.4
|
1.0
|
|
CD2
|
A:HIS36
|
2.9
|
29.9
|
1.0
|
|
C4D
|
A:HEC302
|
3.0
|
40.0
|
1.0
|
|
CD2
|
A:HIS68
|
3.0
|
31.3
|
1.0
|
|
C1B
|
A:HEC302
|
3.0
|
34.6
|
1.0
|
|
C1D
|
A:HEC302
|
3.0
|
39.5
|
1.0
|
|
C1A
|
A:HEC302
|
3.1
|
35.7
|
1.0
|
|
C4A
|
A:HEC302
|
3.1
|
31.7
|
1.0
|
|
C4B
|
A:HEC302
|
3.1
|
35.6
|
1.0
|
|
C1C
|
A:HEC302
|
3.1
|
34.6
|
1.0
|
|
C4C
|
A:HEC302
|
3.1
|
37.3
|
1.0
|
|
CE1
|
A:HIS36
|
3.2
|
28.9
|
1.0
|
|
CHB
|
A:HEC302
|
3.4
|
32.7
|
1.0
|
|
CHA
|
A:HEC302
|
3.4
|
36.1
|
1.0
|
|
CHC
|
A:HEC302
|
3.4
|
33.8
|
1.0
|
|
CHD
|
A:HEC302
|
3.4
|
35.8
|
1.0
|
|
ND1
|
A:HIS68
|
3.9
|
31.0
|
1.0
|
|
CG
|
A:HIS68
|
4.1
|
32.9
|
1.0
|
|
CG
|
A:HIS36
|
4.1
|
29.6
|
1.0
|
|
C3D
|
A:HEC302
|
4.1
|
43.2
|
1.0
|
|
C2B
|
A:HEC302
|
4.2
|
34.6
|
1.0
|
|
C2D
|
A:HEC302
|
4.2
|
39.3
|
1.0
|
|
ND1
|
A:HIS36
|
4.2
|
28.2
|
1.0
|
|
C2A
|
A:HEC302
|
4.2
|
33.8
|
1.0
|
|
C3B
|
A:HEC302
|
4.2
|
32.4
|
1.0
|
|
C3A
|
A:HEC302
|
4.2
|
31.9
|
1.0
|
|
C2C
|
A:HEC302
|
4.3
|
37.9
|
1.0
|
|
C3C
|
A:HEC302
|
4.3
|
35.3
|
1.0
|
|
CMA
|
A:HEC304
|
4.9
|
30.8
|
1.0
|
|
Iron binding site 3 out
of 14 in 28pb
Go back to
Iron Binding Sites List in 28pb
Iron binding site 3 out
of 14 in the Crystal Structure of Cbca Periplasmic Domain From Geobacter Sulfurreducens
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of Cbca Periplasmic Domain From Geobacter Sulfurreducens within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe303
b:30.9
occ:1.00
|
FE
|
A:HEC303
|
0.0
|
30.9
|
1.0
|
|
NE2
|
A:HIS45
|
1.9
|
35.0
|
1.0
|
|
NA
|
A:HEC303
|
1.9
|
27.5
|
1.0
|
|
NC
|
A:HEC303
|
2.0
|
28.8
|
1.0
|
|
NB
|
A:HEC303
|
2.0
|
31.0
|
1.0
|
|
NE2
|
A:HIS93
|
2.0
|
31.9
|
1.0
|
|
ND
|
A:HEC303
|
2.0
|
29.4
|
1.0
|
|
CE1
|
A:HIS45
|
2.8
|
33.8
|
1.0
|
|
C4A
|
A:HEC303
|
3.0
|
29.9
|
1.0
|
|
CE1
|
A:HIS93
|
3.0
|
33.4
|
1.0
|
|
C1A
|
A:HEC303
|
3.0
|
29.3
|
1.0
|
|
CD2
|
A:HIS45
|
3.0
|
35.7
|
1.0
|
|
C4C
|
A:HEC303
|
3.0
|
32.1
|
1.0
|
|
C1C
|
A:HEC303
|
3.0
|
31.9
|
1.0
|
|
C4B
|
A:HEC303
|
3.0
|
31.1
|
1.0
|
|
C1B
|
A:HEC303
|
3.0
|
31.0
|
1.0
|
|
C1D
|
A:HEC303
|
3.0
|
29.7
|
1.0
|
|
CD2
|
A:HIS93
|
3.1
|
32.2
|
1.0
|
|
C4D
|
A:HEC303
|
3.1
|
28.6
|
1.0
|
|
CHD
|
A:HEC303
|
3.4
|
30.1
|
1.0
|
|
CHC
|
A:HEC303
|
3.4
|
31.1
|
1.0
|
|
CHB
|
A:HEC303
|
3.4
|
28.7
|
1.0
|
|
CHA
|
A:HEC303
|
3.4
|
29.5
|
1.0
|
|
ND1
|
A:HIS45
|
4.0
|
34.7
|
1.0
|
|
CG
|
A:HIS45
|
4.1
|
37.6
|
1.0
|
|
ND1
|
A:HIS93
|
4.1
|
29.3
|
1.0
|
|
C3A
|
A:HEC303
|
4.1
|
29.8
|
1.0
|
|
C2A
|
A:HEC303
|
4.1
|
29.8
|
1.0
|
|
CG
|
A:HIS93
|
4.2
|
33.4
|
1.0
|
|
C2C
|
A:HEC303
|
4.2
|
29.9
|
1.0
|
|
C3B
|
A:HEC303
|
4.2
|
33.0
|
1.0
|
|
C2D
|
A:HEC303
|
4.2
|
28.3
|
1.0
|
|
C2B
|
A:HEC303
|
4.2
|
31.7
|
1.0
|
|
C3C
|
A:HEC303
|
4.2
|
30.4
|
1.0
|
|
C3D
|
A:HEC303
|
4.2
|
28.8
|
1.0
|
|
Iron binding site 4 out
of 14 in 28pb
Go back to
Iron Binding Sites List in 28pb
Iron binding site 4 out
of 14 in the Crystal Structure of Cbca Periplasmic Domain From Geobacter Sulfurreducens
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of Cbca Periplasmic Domain From Geobacter Sulfurreducens within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe304
b:30.4
occ:1.00
|
FE
|
A:HEC304
|
0.0
|
30.4
|
1.0
|
|
NE2
|
A:HIS227
|
2.0
|
29.7
|
1.0
|
|
NE2
|
A:HIS90
|
2.0
|
28.9
|
1.0
|
|
NA
|
A:HEC304
|
2.0
|
32.6
|
1.0
|
|
ND
|
A:HEC304
|
2.0
|
32.5
|
1.0
|
|
NB
|
A:HEC304
|
2.1
|
32.4
|
1.0
|
|
NC
|
A:HEC304
|
2.1
|
30.0
|
1.0
|
|
CE1
|
A:HIS90
|
2.9
|
27.7
|
1.0
|
|
CE1
|
A:HIS227
|
2.9
|
33.7
|
1.0
|
|
C1A
|
A:HEC304
|
3.0
|
33.1
|
1.0
|
|
CD2
|
A:HIS227
|
3.0
|
29.9
|
1.0
|
|
CD2
|
A:HIS90
|
3.0
|
26.8
|
1.0
|
|
C4A
|
A:HEC304
|
3.0
|
31.9
|
1.0
|
|
C4D
|
A:HEC304
|
3.0
|
34.8
|
1.0
|
|
C1D
|
A:HEC304
|
3.1
|
32.5
|
1.0
|
|
C1B
|
A:HEC304
|
3.1
|
33.8
|
1.0
|
|
C1C
|
A:HEC304
|
3.1
|
30.6
|
1.0
|
|
C4B
|
A:HEC304
|
3.1
|
31.8
|
1.0
|
|
C4C
|
A:HEC304
|
3.1
|
31.2
|
1.0
|
|
CHA
|
A:HEC304
|
3.4
|
31.5
|
1.0
|
|
CHB
|
A:HEC304
|
3.4
|
32.1
|
1.0
|
|
CHC
|
A:HEC304
|
3.4
|
29.8
|
1.0
|
|
CHD
|
A:HEC304
|
3.4
|
32.6
|
1.0
|
|
ND1
|
A:HIS90
|
4.0
|
28.3
|
1.0
|
|
ND1
|
A:HIS227
|
4.1
|
30.4
|
1.0
|
|
CG
|
A:HIS90
|
4.1
|
28.8
|
1.0
|
|
CG
|
A:HIS227
|
4.1
|
31.6
|
1.0
|
|
C2A
|
A:HEC304
|
4.2
|
33.3
|
1.0
|
|
C3A
|
A:HEC304
|
4.2
|
33.1
|
1.0
|
|
C3D
|
A:HEC304
|
4.2
|
34.3
|
1.0
|
|
C2D
|
A:HEC304
|
4.2
|
32.7
|
1.0
|
|
C2B
|
A:HEC304
|
4.3
|
31.8
|
1.0
|
|
C2C
|
A:HEC304
|
4.3
|
32.8
|
1.0
|
|
C3B
|
A:HEC304
|
4.3
|
32.9
|
1.0
|
|
C3C
|
A:HEC304
|
4.3
|
33.0
|
1.0
|
|
CG2
|
A:ILE71
|
4.8
|
33.7
|
1.0
|
|
Iron binding site 5 out
of 14 in 28pb
Go back to
Iron Binding Sites List in 28pb
Iron binding site 5 out
of 14 in the Crystal Structure of Cbca Periplasmic Domain From Geobacter Sulfurreducens
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of Cbca Periplasmic Domain From Geobacter Sulfurreducens within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe305
b:31.2
occ:1.00
|
FE
|
A:HEC305
|
0.0
|
31.2
|
1.0
|
|
NE2
|
A:HIS143
|
1.9
|
30.4
|
1.0
|
|
NE2
|
A:HIS123
|
1.9
|
26.8
|
1.0
|
|
ND
|
A:HEC305
|
2.0
|
33.6
|
1.0
|
|
NA
|
A:HEC305
|
2.0
|
34.3
|
1.0
|
|
NB
|
A:HEC305
|
2.1
|
30.4
|
1.0
|
|
NC
|
A:HEC305
|
2.1
|
30.2
|
1.0
|
|
CE1
|
A:HIS143
|
2.8
|
30.1
|
1.0
|
|
CD2
|
A:HIS123
|
2.9
|
29.5
|
1.0
|
|
CE1
|
A:HIS123
|
2.9
|
28.0
|
1.0
|
|
C4D
|
A:HEC305
|
3.0
|
34.0
|
1.0
|
|
C1A
|
A:HEC305
|
3.0
|
33.7
|
1.0
|
|
CD2
|
A:HIS143
|
3.0
|
30.8
|
1.0
|
|
C1B
|
A:HEC305
|
3.0
|
30.7
|
1.0
|
|
C1D
|
A:HEC305
|
3.1
|
34.1
|
1.0
|
|
C4B
|
A:HEC305
|
3.1
|
31.5
|
1.0
|
|
C1C
|
A:HEC305
|
3.1
|
30.5
|
1.0
|
|
C4A
|
A:HEC305
|
3.1
|
32.8
|
1.0
|
|
C4C
|
A:HEC305
|
3.1
|
31.7
|
1.0
|
|
CHA
|
A:HEC305
|
3.3
|
32.3
|
1.0
|
|
CHC
|
A:HEC305
|
3.4
|
29.4
|
1.0
|
|
CHB
|
A:HEC305
|
3.4
|
30.6
|
1.0
|
|
CHD
|
A:HEC305
|
3.5
|
32.4
|
1.0
|
|
ND1
|
A:HIS143
|
4.0
|
28.9
|
1.0
|
|
ND1
|
A:HIS123
|
4.1
|
27.8
|
1.0
|
|
CG
|
A:HIS123
|
4.1
|
29.5
|
1.0
|
|
CG
|
A:HIS143
|
4.1
|
30.2
|
1.0
|
|
C3D
|
A:HEC305
|
4.2
|
36.9
|
1.0
|
|
C2D
|
A:HEC305
|
4.2
|
36.2
|
1.0
|
|
C2A
|
A:HEC305
|
4.2
|
36.2
|
1.0
|
|
C2B
|
A:HEC305
|
4.2
|
30.2
|
1.0
|
|
C3A
|
A:HEC305
|
4.2
|
33.8
|
1.0
|
|
C3B
|
A:HEC305
|
4.3
|
31.4
|
1.0
|
|
C2C
|
A:HEC305
|
4.3
|
29.6
|
1.0
|
|
C3C
|
A:HEC305
|
4.3
|
30.2
|
1.0
|
|
CD1
|
A:ILE231
|
4.8
|
27.2
|
1.0
|
|
Iron binding site 6 out
of 14 in 28pb
Go back to
Iron Binding Sites List in 28pb
Iron binding site 6 out
of 14 in the Crystal Structure of Cbca Periplasmic Domain From Geobacter Sulfurreducens
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of Cbca Periplasmic Domain From Geobacter Sulfurreducens within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe306
b:28.8
occ:1.00
|
FE
|
A:HEC306
|
0.0
|
28.8
|
1.0
|
|
NE2
|
A:HIS242
|
1.9
|
32.3
|
1.0
|
|
NA
|
A:HEC306
|
1.9
|
30.6
|
1.0
|
|
NC
|
A:HEC306
|
2.0
|
26.8
|
1.0
|
|
NE2
|
A:HIS133
|
2.0
|
29.5
|
1.0
|
|
ND
|
A:HEC306
|
2.1
|
30.3
|
1.0
|
|
NB
|
A:HEC306
|
2.1
|
31.7
|
1.0
|
|
CE1
|
A:HIS242
|
2.8
|
32.8
|
1.0
|
|
C1A
|
A:HEC306
|
3.0
|
35.3
|
1.0
|
|
C1C
|
A:HEC306
|
3.0
|
31.3
|
1.0
|
|
C4A
|
A:HEC306
|
3.0
|
35.0
|
1.0
|
|
C4C
|
A:HEC306
|
3.0
|
29.7
|
1.0
|
|
CD2
|
A:HIS133
|
3.0
|
25.5
|
1.0
|
|
C4D
|
A:HEC306
|
3.0
|
32.4
|
1.0
|
|
CE1
|
A:HIS133
|
3.0
|
29.4
|
1.0
|
|
CD2
|
A:HIS242
|
3.0
|
32.9
|
1.0
|
|
C1D
|
A:HEC306
|
3.1
|
29.6
|
1.0
|
|
C4B
|
A:HEC306
|
3.1
|
32.7
|
1.0
|
|
C1B
|
A:HEC306
|
3.1
|
33.5
|
1.0
|
|
CHC
|
A:HEC306
|
3.3
|
30.8
|
1.0
|
|
CHD
|
A:HEC306
|
3.4
|
28.5
|
1.0
|
|
CHA
|
A:HEC306
|
3.4
|
30.9
|
1.0
|
|
CHB
|
A:HEC306
|
3.4
|
32.1
|
1.0
|
|
ND1
|
A:HIS242
|
3.9
|
33.2
|
1.0
|
|
CG
|
A:HIS242
|
4.1
|
33.4
|
1.0
|
|
C2A
|
A:HEC306
|
4.1
|
38.0
|
1.0
|
|
C3A
|
A:HEC306
|
4.1
|
38.8
|
1.0
|
|
ND1
|
A:HIS133
|
4.2
|
28.4
|
1.0
|
|
CG
|
A:HIS133
|
4.2
|
27.8
|
1.0
|
|
C2C
|
A:HEC306
|
4.2
|
29.0
|
1.0
|
|
C3C
|
A:HEC306
|
4.2
|
28.2
|
1.0
|
|
C2D
|
A:HEC306
|
4.2
|
31.3
|
1.0
|
|
C3D
|
A:HEC306
|
4.2
|
34.1
|
1.0
|
|
C3B
|
A:HEC306
|
4.3
|
33.1
|
1.0
|
|
C2B
|
A:HEC306
|
4.3
|
34.0
|
1.0
|
|
Iron binding site 7 out
of 14 in 28pb
Go back to
Iron Binding Sites List in 28pb
Iron binding site 7 out
of 14 in the Crystal Structure of Cbca Periplasmic Domain From Geobacter Sulfurreducens
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of Cbca Periplasmic Domain From Geobacter Sulfurreducens within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe307
b:31.3
occ:1.00
|
FE
|
A:HEC307
|
0.0
|
31.3
|
1.0
|
|
NE2
|
A:HIS80
|
1.9
|
29.0
|
1.0
|
|
NE2
|
A:HIS114
|
1.9
|
27.5
|
1.0
|
|
ND
|
A:HEC307
|
2.0
|
32.9
|
1.0
|
|
NC
|
A:HEC307
|
2.0
|
32.5
|
1.0
|
|
NB
|
A:HEC307
|
2.0
|
30.8
|
1.0
|
|
NA
|
A:HEC307
|
2.1
|
33.1
|
1.0
|
|
CE1
|
A:HIS114
|
2.7
|
31.0
|
1.0
|
|
CE1
|
A:HIS80
|
2.9
|
29.6
|
1.0
|
|
CD2
|
A:HIS80
|
2.9
|
29.4
|
1.0
|
|
C4D
|
A:HEC307
|
3.0
|
33.4
|
1.0
|
|
C1D
|
A:HEC307
|
3.0
|
34.5
|
1.0
|
|
C4B
|
A:HEC307
|
3.0
|
32.0
|
1.0
|
|
C4C
|
A:HEC307
|
3.1
|
35.6
|
1.0
|
|
C1C
|
A:HEC307
|
3.1
|
33.0
|
1.0
|
|
CD2
|
A:HIS114
|
3.1
|
30.2
|
1.0
|
|
C1A
|
A:HEC307
|
3.1
|
32.5
|
1.0
|
|
C1B
|
A:HEC307
|
3.1
|
33.5
|
1.0
|
|
C4A
|
A:HEC307
|
3.1
|
32.2
|
1.0
|
|
CHA
|
A:HEC307
|
3.3
|
32.6
|
1.0
|
|
CHC
|
A:HEC307
|
3.4
|
34.2
|
1.0
|
|
CHD
|
A:HEC307
|
3.4
|
34.5
|
1.0
|
|
CHB
|
A:HEC307
|
3.5
|
31.8
|
1.0
|
|
ND1
|
A:HIS114
|
3.9
|
30.0
|
1.0
|
|
ND1
|
A:HIS80
|
4.0
|
28.5
|
1.0
|
|
CG
|
A:HIS80
|
4.1
|
30.6
|
1.0
|
|
CG
|
A:HIS114
|
4.1
|
31.7
|
1.0
|
|
C2D
|
A:HEC307
|
4.2
|
34.5
|
1.0
|
|
C3D
|
A:HEC307
|
4.2
|
35.4
|
1.0
|
|
C2C
|
A:HEC307
|
4.2
|
32.2
|
1.0
|
|
C2A
|
A:HEC307
|
4.3
|
33.0
|
1.0
|
|
C3B
|
A:HEC307
|
4.3
|
30.1
|
1.0
|
|
C3C
|
A:HEC307
|
4.3
|
32.3
|
1.0
|
|
C3A
|
A:HEC307
|
4.3
|
31.4
|
1.0
|
|
C2B
|
A:HEC307
|
4.3
|
33.7
|
1.0
|
|
CB
|
A:ASN83
|
4.9
|
32.9
|
1.0
|
|
Iron binding site 8 out
of 14 in 28pb
Go back to
Iron Binding Sites List in 28pb
Iron binding site 8 out
of 14 in the Crystal Structure of Cbca Periplasmic Domain From Geobacter Sulfurreducens
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of Cbca Periplasmic Domain From Geobacter Sulfurreducens within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe301
b:36.6
occ:1.00
|
FE
|
B:HEC301
|
0.0
|
36.6
|
1.0
|
|
ND
|
B:HEC301
|
1.9
|
37.3
|
1.0
|
|
NB
|
B:HEC301
|
2.0
|
36.6
|
1.0
|
|
NE2
|
B:HIS52
|
2.0
|
42.4
|
1.0
|
|
NE2
|
B:HIS12
|
2.0
|
34.6
|
1.0
|
|
NA
|
B:HEC301
|
2.1
|
38.6
|
1.0
|
|
NC
|
B:HEC301
|
2.1
|
38.4
|
1.0
|
|
CE1
|
B:HIS52
|
2.8
|
42.0
|
1.0
|
|
CE1
|
B:HIS12
|
2.8
|
34.3
|
1.0
|
|
C4D
|
B:HEC301
|
2.9
|
38.8
|
1.0
|
|
C1D
|
B:HEC301
|
2.9
|
40.0
|
1.0
|
|
C4B
|
B:HEC301
|
3.0
|
40.7
|
1.0
|
|
C1B
|
B:HEC301
|
3.0
|
40.9
|
1.0
|
|
C1A
|
B:HEC301
|
3.1
|
37.2
|
1.0
|
|
C4A
|
B:HEC301
|
3.1
|
38.4
|
1.0
|
|
C1C
|
B:HEC301
|
3.1
|
36.9
|
1.0
|
|
C4C
|
B:HEC301
|
3.1
|
38.8
|
1.0
|
|
CD2
|
B:HIS52
|
3.2
|
39.8
|
1.0
|
|
CD2
|
B:HIS12
|
3.2
|
34.5
|
1.0
|
|
CHA
|
B:HEC301
|
3.3
|
38.1
|
1.0
|
|
CHC
|
B:HEC301
|
3.4
|
36.8
|
1.0
|
|
CHD
|
B:HEC301
|
3.4
|
39.9
|
1.0
|
|
CHB
|
B:HEC301
|
3.4
|
39.0
|
1.0
|
|
ND1
|
B:HIS52
|
4.0
|
42.7
|
1.0
|
|
ND1
|
B:HIS12
|
4.0
|
33.1
|
1.0
|
|
C2D
|
B:HEC301
|
4.1
|
40.0
|
1.0
|
|
C3D
|
B:HEC301
|
4.1
|
39.4
|
1.0
|
|
C2B
|
B:HEC301
|
4.2
|
38.1
|
1.0
|
|
C3B
|
B:HEC301
|
4.2
|
39.9
|
1.0
|
|
CG
|
B:HIS52
|
4.2
|
43.4
|
1.0
|
|
CG
|
B:HIS12
|
4.2
|
36.3
|
1.0
|
|
C2A
|
B:HEC301
|
4.2
|
38.3
|
1.0
|
|
C3A
|
B:HEC301
|
4.2
|
37.5
|
1.0
|
|
C2C
|
B:HEC301
|
4.3
|
37.2
|
1.0
|
|
C3C
|
B:HEC301
|
4.3
|
37.1
|
1.0
|
|
Iron binding site 9 out
of 14 in 28pb
Go back to
Iron Binding Sites List in 28pb
Iron binding site 9 out
of 14 in the Crystal Structure of Cbca Periplasmic Domain From Geobacter Sulfurreducens
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Crystal Structure of Cbca Periplasmic Domain From Geobacter Sulfurreducens within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe302
b:47.5
occ:1.00
|
FE
|
B:HEC302
|
0.0
|
47.5
|
1.0
|
|
ND
|
B:HEC302
|
2.0
|
51.8
|
1.0
|
|
NB
|
B:HEC302
|
2.0
|
45.8
|
1.0
|
|
NA
|
B:HEC302
|
2.0
|
52.5
|
1.0
|
|
NC
|
B:HEC302
|
2.1
|
46.9
|
1.0
|
|
NE2
|
B:HIS68
|
2.1
|
44.6
|
1.0
|
|
NE2
|
B:HIS36
|
2.1
|
52.6
|
1.0
|
|
C1B
|
B:HEC302
|
3.0
|
46.4
|
1.0
|
|
CD2
|
B:HIS68
|
3.0
|
42.4
|
1.0
|
|
C1D
|
B:HEC302
|
3.0
|
55.8
|
1.0
|
|
C4D
|
B:HEC302
|
3.0
|
55.7
|
1.0
|
|
CD2
|
B:HIS36
|
3.0
|
55.6
|
1.0
|
|
C4A
|
B:HEC302
|
3.0
|
46.7
|
1.0
|
|
C1A
|
B:HEC302
|
3.1
|
52.8
|
1.0
|
|
C4C
|
B:HEC302
|
3.1
|
48.9
|
1.0
|
|
C4B
|
B:HEC302
|
3.1
|
46.5
|
1.0
|
|
C1C
|
B:HEC302
|
3.1
|
47.4
|
1.0
|
|
CE1
|
B:HIS36
|
3.1
|
53.8
|
1.0
|
|
CE1
|
B:HIS68
|
3.1
|
43.3
|
1.0
|
|
CHB
|
B:HEC302
|
3.3
|
45.2
|
1.0
|
|
CHA
|
B:HEC302
|
3.4
|
57.2
|
1.0
|
|
CHD
|
B:HEC302
|
3.4
|
49.1
|
1.0
|
|
CHC
|
B:HEC302
|
3.5
|
46.1
|
1.0
|
|
C2D
|
B:HEC302
|
4.1
|
60.5
|
1.0
|
|
C3D
|
B:HEC302
|
4.1
|
61.5
|
1.0
|
|
CG
|
B:HIS68
|
4.2
|
43.9
|
1.0
|
|
C2B
|
B:HEC302
|
4.2
|
45.0
|
1.0
|
|
CG
|
B:HIS36
|
4.2
|
53.4
|
1.0
|
|
C3A
|
B:HEC302
|
4.2
|
52.7
|
1.0
|
|
ND1
|
B:HIS36
|
4.2
|
54.4
|
1.0
|
|
ND1
|
B:HIS68
|
4.2
|
44.0
|
1.0
|
|
C2A
|
B:HEC302
|
4.2
|
53.0
|
1.0
|
|
C3B
|
B:HEC302
|
4.2
|
41.5
|
1.0
|
|
C3C
|
B:HEC302
|
4.3
|
48.7
|
1.0
|
|
C2C
|
B:HEC302
|
4.3
|
47.8
|
1.0
|
|
CMA
|
B:HEC305
|
4.9
|
43.9
|
1.0
|
|
Iron binding site 10 out
of 14 in 28pb
Go back to
Iron Binding Sites List in 28pb
Iron binding site 10 out
of 14 in the Crystal Structure of Cbca Periplasmic Domain From Geobacter Sulfurreducens
 Mono view
 Stereo pair view
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A full contact list of Iron with other atoms in the Fe binding
site number 10 of Crystal Structure of Cbca Periplasmic Domain From Geobacter Sulfurreducens within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe303
b:36.7
occ:1.00
|
FE
|
B:HEC303
|
0.0
|
36.7
|
1.0
|
|
NE2
|
B:HIS45
|
1.9
|
39.0
|
1.0
|
|
NA
|
B:HEC303
|
1.9
|
34.7
|
1.0
|
|
NC
|
B:HEC303
|
1.9
|
36.8
|
1.0
|
|
NE2
|
B:HIS93
|
2.0
|
40.1
|
1.0
|
|
NB
|
B:HEC303
|
2.0
|
39.3
|
1.0
|
|
ND
|
B:HEC303
|
2.1
|
38.0
|
1.0
|
|
CE1
|
B:HIS45
|
2.8
|
40.9
|
1.0
|
|
CE1
|
B:HIS93
|
2.9
|
43.4
|
1.0
|
|
C1C
|
B:HEC303
|
2.9
|
42.3
|
1.0
|
|
C1A
|
B:HEC303
|
2.9
|
35.6
|
1.0
|
|
C4A
|
B:HEC303
|
3.0
|
38.2
|
1.0
|
|
CD2
|
B:HIS45
|
3.0
|
39.0
|
1.0
|
|
C1B
|
B:HEC303
|
3.0
|
38.3
|
1.0
|
|
C4B
|
B:HEC303
|
3.0
|
40.0
|
1.0
|
|
C4C
|
B:HEC303
|
3.0
|
39.5
|
1.0
|
|
C4D
|
B:HEC303
|
3.1
|
36.8
|
1.0
|
|
CD2
|
B:HIS93
|
3.1
|
37.4
|
1.0
|
|
C1D
|
B:HEC303
|
3.1
|
36.4
|
1.0
|
|
CHC
|
B:HEC303
|
3.3
|
37.8
|
1.0
|
|
CHA
|
B:HEC303
|
3.3
|
35.2
|
1.0
|
|
CHB
|
B:HEC303
|
3.3
|
35.6
|
1.0
|
|
CHD
|
B:HEC303
|
3.4
|
36.3
|
1.0
|
|
ND1
|
B:HIS45
|
4.0
|
39.8
|
1.0
|
|
ND1
|
B:HIS93
|
4.0
|
41.1
|
1.0
|
|
CG
|
B:HIS45
|
4.1
|
41.8
|
1.0
|
|
C2A
|
B:HEC303
|
4.1
|
35.4
|
1.0
|
|
C3A
|
B:HEC303
|
4.1
|
35.0
|
1.0
|
|
C2C
|
B:HEC303
|
4.1
|
42.4
|
1.0
|
|
CG
|
B:HIS93
|
4.1
|
39.8
|
1.0
|
|
C2B
|
B:HEC303
|
4.2
|
40.5
|
1.0
|
|
C3C
|
B:HEC303
|
4.2
|
39.0
|
1.0
|
|
C3B
|
B:HEC303
|
4.2
|
40.1
|
1.0
|
|
C3D
|
B:HEC303
|
4.2
|
36.0
|
1.0
|
|
C2D
|
B:HEC303
|
4.3
|
36.3
|
1.0
|
|
Reference:
J.M.Antunes,
M.A.Silva,
M.A.Correia,
C.A.Salgueiro,
T.Santos-Silva,
L.Morgado.
Bridging Inner Membrane and Periplasm in Geobacter Sulfurreducens: Structural and Biochemical Insights Into Cbca and Its Redox Partners Int.J.Biol.Macromol. 52597 2026.
ISSN: ISSN 0141-8130
DOI: 10.1016/J.IJBIOMAC.2026.152597
Page generated: Sun Oct 4 09:34:17 2026
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