Iron in PDB 30tw: Crystal Structure of Sphingobium Lactosutens Styrene-Oxide Isomerase with Unknown Ligand
Protein crystallography data
The structure of Crystal Structure of Sphingobium Lactosutens Styrene-Oxide Isomerase with Unknown Ligand, PDB code: 30tw
was solved by
Y.Bloch,
K.Kovalev,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
24.82 /
1.70
|
|
Space group
|
P 21 21 2
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
95.81,
99.323,
60.33,
90,
90,
90
|
|
R / Rfree (%)
|
18.4 /
20.4
|
Other elements in 30tw:
The structure of Crystal Structure of Sphingobium Lactosutens Styrene-Oxide Isomerase with Unknown Ligand also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Crystal Structure of Sphingobium Lactosutens Styrene-Oxide Isomerase with Unknown Ligand
(pdb code 30tw). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 3 binding sites of Iron where determined in the
Crystal Structure of Sphingobium Lactosutens Styrene-Oxide Isomerase with Unknown Ligand, PDB code: 30tw:
Jump to Iron binding site number:
1;
2;
3;
Iron binding site 1 out
of 3 in 30tw
Go back to
Iron Binding Sites List in 30tw
Iron binding site 1 out
of 3 in the Crystal Structure of Sphingobium Lactosutens Styrene-Oxide Isomerase with Unknown Ligand
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of Sphingobium Lactosutens Styrene-Oxide Isomerase with Unknown Ligand within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe213
b:20.9
occ:1.00
|
FE
|
A:HEM213
|
0.0
|
20.9
|
1.0
|
|
NE2
|
A:HIS80
|
2.0
|
21.6
|
1.0
|
|
NB
|
A:HEM213
|
2.0
|
21.2
|
1.0
|
|
NA
|
A:HEM213
|
2.0
|
20.4
|
1.0
|
|
ND
|
A:HEM213
|
2.0
|
20.9
|
1.0
|
|
NC
|
A:HEM213
|
2.0
|
19.7
|
1.0
|
|
CE1
|
A:HIS80
|
3.0
|
22.9
|
1.0
|
|
CD2
|
A:HIS80
|
3.0
|
21.7
|
1.0
|
|
HH
|
B:TYR125
|
3.0
|
24.4
|
1.0
|
|
C1B
|
A:HEM213
|
3.0
|
22.5
|
1.0
|
|
C1D
|
A:HEM213
|
3.0
|
21.5
|
1.0
|
|
C4A
|
A:HEM213
|
3.0
|
21.6
|
1.0
|
|
C1A
|
A:HEM213
|
3.1
|
21.2
|
1.0
|
|
C4C
|
A:HEM213
|
3.1
|
20.5
|
1.0
|
|
C1C
|
A:HEM213
|
3.1
|
20.7
|
1.0
|
|
C4D
|
A:HEM213
|
3.1
|
21.9
|
1.0
|
|
C4B
|
A:HEM213
|
3.1
|
22.0
|
1.0
|
|
HE1
|
A:HIS80
|
3.2
|
22.9
|
1.0
|
|
HD2
|
A:HIS80
|
3.2
|
21.7
|
1.0
|
|
CHB
|
A:HEM213
|
3.4
|
22.2
|
1.0
|
|
CHD
|
A:HEM213
|
3.4
|
20.7
|
1.0
|
|
CHA
|
A:HEM213
|
3.4
|
21.6
|
1.0
|
|
CHC
|
A:HEM213
|
3.4
|
21.4
|
1.0
|
|
HE1
|
B:TYR125
|
3.8
|
23.1
|
1.0
|
|
OH
|
B:TYR125
|
3.9
|
24.4
|
1.0
|
|
CG
|
A:HIS80
|
4.1
|
20.8
|
1.0
|
|
ND1
|
A:HIS80
|
4.1
|
22.5
|
1.0
|
|
C3B
|
A:HEM213
|
4.3
|
22.9
|
1.0
|
|
C2B
|
A:HEM213
|
4.3
|
23.1
|
1.0
|
|
C3C
|
A:HEM213
|
4.3
|
21.1
|
1.0
|
|
C2D
|
A:HEM213
|
4.3
|
23.3
|
1.0
|
|
C3A
|
A:HEM213
|
4.3
|
22.2
|
1.0
|
|
C3D
|
A:HEM213
|
4.3
|
23.9
|
1.0
|
|
C2A
|
A:HEM213
|
4.3
|
22.3
|
1.0
|
|
C2C
|
A:HEM213
|
4.3
|
21.1
|
1.0
|
|
HHB
|
A:HEM213
|
4.4
|
22.5
|
1.0
|
|
HHD
|
A:HEM213
|
4.5
|
20.9
|
1.0
|
|
HHA
|
A:HEM213
|
4.5
|
21.6
|
1.0
|
|
HHC
|
A:HEM213
|
4.5
|
21.6
|
1.0
|
|
HA3
|
A:GLY45
|
4.6
|
22.1
|
1.0
|
|
CE1
|
B:TYR125
|
4.7
|
23.1
|
1.0
|
|
CZ
|
B:TYR125
|
4.8
|
23.7
|
1.0
|
|
Iron binding site 2 out
of 3 in 30tw
Go back to
Iron Binding Sites List in 30tw
Iron binding site 2 out
of 3 in the Crystal Structure of Sphingobium Lactosutens Styrene-Oxide Isomerase with Unknown Ligand
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of Sphingobium Lactosutens Styrene-Oxide Isomerase with Unknown Ligand within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe214
b:20.4
occ:1.00
|
FE
|
B:HEM214
|
0.0
|
20.4
|
1.0
|
|
NE2
|
B:HIS80
|
2.0
|
21.5
|
1.0
|
|
NB
|
B:HEM214
|
2.0
|
20.5
|
1.0
|
|
NA
|
B:HEM214
|
2.0
|
19.9
|
1.0
|
|
NC
|
B:HEM214
|
2.0
|
18.8
|
1.0
|
|
ND
|
B:HEM214
|
2.0
|
20.5
|
1.0
|
|
CD2
|
B:HIS80
|
3.0
|
21.8
|
1.0
|
|
HH
|
C:TYR125
|
3.0
|
23.8
|
1.0
|
|
CE1
|
B:HIS80
|
3.0
|
22.7
|
1.0
|
|
C1B
|
B:HEM214
|
3.0
|
21.6
|
1.0
|
|
C4A
|
B:HEM214
|
3.0
|
21.2
|
1.0
|
|
C1A
|
B:HEM214
|
3.0
|
20.7
|
1.0
|
|
C1C
|
B:HEM214
|
3.1
|
19.4
|
1.0
|
|
C1D
|
B:HEM214
|
3.1
|
21.1
|
1.0
|
|
C4B
|
B:HEM214
|
3.1
|
21.3
|
1.0
|
|
C4C
|
B:HEM214
|
3.1
|
19.8
|
1.0
|
|
C4D
|
B:HEM214
|
3.1
|
21.3
|
1.0
|
|
HD2
|
B:HIS80
|
3.2
|
21.8
|
1.0
|
|
HE1
|
B:HIS80
|
3.2
|
22.7
|
1.0
|
|
CHB
|
B:HEM214
|
3.4
|
21.4
|
1.0
|
|
CHC
|
B:HEM214
|
3.4
|
19.9
|
1.0
|
|
CHD
|
B:HEM214
|
3.4
|
20.6
|
1.0
|
|
CHA
|
B:HEM214
|
3.4
|
20.5
|
1.0
|
|
HE1
|
C:TYR125
|
3.9
|
22.2
|
1.0
|
|
OH
|
C:TYR125
|
3.9
|
23.8
|
1.0
|
|
CG
|
B:HIS80
|
4.1
|
21.4
|
1.0
|
|
ND1
|
B:HIS80
|
4.1
|
22.4
|
1.0
|
|
C2B
|
B:HEM214
|
4.3
|
23.0
|
1.0
|
|
C3B
|
B:HEM214
|
4.3
|
22.8
|
1.0
|
|
C3A
|
B:HEM214
|
4.3
|
22.1
|
1.0
|
|
C2A
|
B:HEM214
|
4.3
|
21.4
|
1.0
|
|
C3C
|
B:HEM214
|
4.3
|
20.0
|
1.0
|
|
C2D
|
B:HEM214
|
4.3
|
22.1
|
1.0
|
|
C2C
|
B:HEM214
|
4.3
|
19.1
|
1.0
|
|
C3D
|
B:HEM214
|
4.3
|
23.2
|
1.0
|
|
HHB
|
B:HEM214
|
4.4
|
21.7
|
1.0
|
|
HHC
|
B:HEM214
|
4.5
|
20.2
|
1.0
|
|
HHD
|
B:HEM214
|
4.5
|
20.6
|
1.0
|
|
HHA
|
B:HEM214
|
4.5
|
20.6
|
1.0
|
|
HA3
|
B:GLY45
|
4.7
|
23.0
|
1.0
|
|
CE1
|
C:TYR125
|
4.7
|
22.2
|
1.0
|
|
CZ
|
C:TYR125
|
4.8
|
23.0
|
1.0
|
|
HD23
|
B:LEU48
|
4.9
|
23.4
|
1.0
|
|
Iron binding site 3 out
of 3 in 30tw
Go back to
Iron Binding Sites List in 30tw
Iron binding site 3 out
of 3 in the Crystal Structure of Sphingobium Lactosutens Styrene-Oxide Isomerase with Unknown Ligand
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of Sphingobium Lactosutens Styrene-Oxide Isomerase with Unknown Ligand within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe201
b:19.1
occ:1.00
|
FE
|
C:HEM201
|
0.0
|
19.1
|
1.0
|
|
NE2
|
C:HIS80
|
2.0
|
19.6
|
1.0
|
|
ND
|
C:HEM201
|
2.0
|
19.0
|
1.0
|
|
NB
|
C:HEM201
|
2.0
|
19.2
|
1.0
|
|
NA
|
C:HEM201
|
2.0
|
17.6
|
1.0
|
|
NC
|
C:HEM201
|
2.0
|
18.1
|
1.0
|
|
CE1
|
C:HIS80
|
3.0
|
21.2
|
1.0
|
|
CD2
|
C:HIS80
|
3.0
|
19.8
|
1.0
|
|
C1B
|
C:HEM201
|
3.0
|
20.1
|
1.0
|
|
C1D
|
C:HEM201
|
3.0
|
20.1
|
1.0
|
|
C1A
|
C:HEM201
|
3.0
|
18.7
|
1.0
|
|
C1C
|
C:HEM201
|
3.0
|
19.2
|
1.0
|
|
C4B
|
C:HEM201
|
3.1
|
19.9
|
1.0
|
|
C4A
|
C:HEM201
|
3.1
|
18.8
|
1.0
|
|
C4C
|
C:HEM201
|
3.1
|
19.4
|
1.0
|
|
C4D
|
C:HEM201
|
3.1
|
20.0
|
1.0
|
|
HH
|
A:TYR125
|
3.1
|
22.0
|
1.0
|
|
HE1
|
C:HIS80
|
3.2
|
21.2
|
1.0
|
|
HD2
|
C:HIS80
|
3.2
|
19.8
|
1.0
|
|
CHB
|
C:HEM201
|
3.4
|
19.7
|
1.0
|
|
CHD
|
C:HEM201
|
3.4
|
20.2
|
1.0
|
|
CHC
|
C:HEM201
|
3.4
|
19.7
|
1.0
|
|
CHA
|
C:HEM201
|
3.4
|
19.4
|
1.0
|
|
HE1
|
A:TYR125
|
3.9
|
20.1
|
1.0
|
|
OH
|
A:TYR125
|
3.9
|
22.0
|
1.0
|
|
CG
|
C:HIS80
|
4.1
|
20.2
|
1.0
|
|
ND1
|
C:HIS80
|
4.1
|
21.3
|
1.0
|
|
C3B
|
C:HEM201
|
4.3
|
21.2
|
1.0
|
|
C2B
|
C:HEM201
|
4.3
|
20.9
|
1.0
|
|
C2D
|
C:HEM201
|
4.3
|
21.4
|
1.0
|
|
C2A
|
C:HEM201
|
4.3
|
19.1
|
1.0
|
|
C3C
|
C:HEM201
|
4.3
|
20.4
|
1.0
|
|
C3D
|
C:HEM201
|
4.3
|
22.1
|
1.0
|
|
C3A
|
C:HEM201
|
4.3
|
19.2
|
1.0
|
|
C2C
|
C:HEM201
|
4.3
|
20.0
|
1.0
|
|
HHB
|
C:HEM201
|
4.4
|
19.9
|
1.0
|
|
HHD
|
C:HEM201
|
4.5
|
20.4
|
1.0
|
|
HHC
|
C:HEM201
|
4.5
|
20.0
|
1.0
|
|
HHA
|
C:HEM201
|
4.5
|
19.6
|
1.0
|
|
HA3
|
C:GLY45
|
4.7
|
19.7
|
1.0
|
|
CE1
|
A:TYR125
|
4.7
|
20.1
|
1.0
|
|
CZ
|
A:TYR125
|
4.8
|
20.8
|
1.0
|
|
HD23
|
C:LEU48
|
5.0
|
22.7
|
1.0
|
|
Reference:
Y.Bloch,
K.Kovalev.
Crystal Structure of Sphingobium Lactosutens Styrene-Oxide Isomerase To Be Published.
Page generated: Sun Oct 4 10:38:48 2026
|