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Iron in PDB 36rp: Cryo-Em Structure of Sulfolobus Acidocaldarius Rna Polymerase Without Stalk (No RPO4/RPO7)

Enzymatic activity of Cryo-Em Structure of Sulfolobus Acidocaldarius Rna Polymerase Without Stalk (No RPO4/RPO7)

All present enzymatic activity of Cryo-Em Structure of Sulfolobus Acidocaldarius Rna Polymerase Without Stalk (No RPO4/RPO7):
2.7.7.6;

Other elements in 36rp:

The structure of Cryo-Em Structure of Sulfolobus Acidocaldarius Rna Polymerase Without Stalk (No RPO4/RPO7) also contains other interesting chemical elements:

Zinc (Zn) 5 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Cryo-Em Structure of Sulfolobus Acidocaldarius Rna Polymerase Without Stalk (No RPO4/RPO7) (pdb code 36rp). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Cryo-Em Structure of Sulfolobus Acidocaldarius Rna Polymerase Without Stalk (No RPO4/RPO7), PDB code: 36rp:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 36rp

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Iron binding site 1 out of 4 in the Cryo-Em Structure of Sulfolobus Acidocaldarius Rna Polymerase Without Stalk (No RPO4/RPO7)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Sulfolobus Acidocaldarius Rna Polymerase Without Stalk (No RPO4/RPO7) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe1001

b:531.0
occ:1.00
FE1 D:SF41001 0.0 531.0 1.0
SG D:CYS206 2.3 531.0 1.0
S2 D:SF41001 2.3 531.0 1.0
S4 D:SF41001 2.3 531.0 1.0
S3 D:SF41001 2.3 531.0 1.0
FE4 D:SF41001 2.7 531.0 1.0
FE3 D:SF41001 2.7 531.0 1.0
FE2 D:SF41001 2.7 531.0 1.0
CD D:PRO184 3.2 531.0 1.0
SG D:CYS183 3.9 531.0 1.0
S1 D:SF41001 3.9 531.0 1.0
SG D:CYS209 3.9 531.0 1.0
CG D:PRO184 3.9 531.0 1.0
SG D:CYS203 3.9 410.7 1.0
CB D:CYS206 4.0 531.0 1.0
CG1 D:ILE204 4.2 370.4 1.0
N D:PRO184 4.2 531.0 1.0
CA D:CYS183 4.4 531.0 1.0
N D:CYS206 4.5 531.0 1.0
N D:ILE204 4.5 370.4 1.0
N D:GLU207 4.6 351.8 1.0
CB D:CYS183 4.7 531.0 1.0
CB D:PRO184 4.7 531.0 1.0
CA D:CYS203 4.7 410.7 1.0
CD1 D:ILE204 4.7 370.4 1.0
CB D:CYS203 4.7 410.7 1.0
CA D:CYS206 4.7 531.0 1.0
C D:CYS183 4.8 531.0 1.0
N D:GLU208 4.9 408.3 1.0
N D:GLU185 5.0 477.4 1.0

Iron binding site 2 out of 4 in 36rp

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Iron binding site 2 out of 4 in the Cryo-Em Structure of Sulfolobus Acidocaldarius Rna Polymerase Without Stalk (No RPO4/RPO7)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Sulfolobus Acidocaldarius Rna Polymerase Without Stalk (No RPO4/RPO7) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe1001

b:531.0
occ:1.00
FE2 D:SF41001 0.0 531.0 1.0
SG D:CYS183 2.1 531.0 1.0
SG D:CYS209 2.2 531.0 1.0
S1 D:SF41001 2.3 531.0 1.0
S4 D:SF41001 2.3 531.0 1.0
S3 D:SF41001 2.3 531.0 1.0
CB D:CYS183 2.6 531.0 1.0
FE3 D:SF41001 2.7 531.0 1.0
FE4 D:SF41001 2.7 531.0 1.0
FE1 D:SF41001 2.7 531.0 1.0
CA D:CYS183 3.2 531.0 1.0
S2 D:SF41001 3.9 531.0 1.0
CE2 D:PHE188 3.9 452.7 1.0
CB D:CYS209 3.9 531.0 1.0
CD D:PRO184 4.1 531.0 1.0
C D:CYS183 4.2 531.0 1.0
CB D:VAL187 4.2 531.0 1.0
CG2 D:VAL187 4.2 531.0 1.0
N D:CYS183 4.3 531.0 1.0
CD2 D:PHE188 4.3 452.7 1.0
N D:PRO184 4.3 531.0 1.0
SG D:CYS203 4.5 410.7 1.0
SG D:CYS206 4.8 531.0 1.0
O D:ALA179 4.8 531.0 1.0
CB D:CYS203 4.8 410.7 1.0
N D:GLU185 4.9 477.4 1.0
N D:CYS209 4.9 531.0 1.0
CG1 D:VAL187 4.9 531.0 1.0
CA D:CYS209 5.0 531.0 1.0

Iron binding site 3 out of 4 in 36rp

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Iron binding site 3 out of 4 in the Cryo-Em Structure of Sulfolobus Acidocaldarius Rna Polymerase Without Stalk (No RPO4/RPO7)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of Sulfolobus Acidocaldarius Rna Polymerase Without Stalk (No RPO4/RPO7) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe1001

b:531.0
occ:1.00
FE3 D:SF41001 0.0 531.0 1.0
S4 D:SF41001 2.3 531.0 1.0
S1 D:SF41001 2.3 531.0 1.0
S2 D:SF41001 2.3 531.0 1.0
SG D:CYS209 2.6 531.0 1.0
FE2 D:SF41001 2.7 531.0 1.0
FE1 D:SF41001 2.7 531.0 1.0
FE4 D:SF41001 2.7 531.0 1.0
SG D:CYS203 3.0 410.7 1.0
CD1 D:ILE219 3.1 385.1 1.0
CB D:CYS209 3.5 531.0 1.0
SG D:CYS206 3.8 531.0 1.0
S3 D:SF41001 3.9 531.0 1.0
N D:CYS209 3.9 531.0 1.0
N D:GLU207 3.9 351.8 1.0
CG1 D:ILE219 4.0 385.1 1.0
CA D:GLU207 4.1 351.8 1.0
N D:GLU208 4.2 408.3 1.0
CA D:CYS209 4.3 531.0 1.0
CB D:CYS203 4.3 410.7 1.0
CG2 D:ILE219 4.5 385.1 1.0
C D:GLU207 4.6 351.8 1.0
SG D:CYS183 4.7 531.0 1.0
N D:CYS206 4.9 531.0 1.0
CB D:ILE219 4.9 385.1 1.0
C D:CYS206 4.9 531.0 1.0
C D:GLU208 4.9 408.3 1.0
CE2 D:PHE188 5.0 452.7 1.0

Iron binding site 4 out of 4 in 36rp

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Iron binding site 4 out of 4 in the Cryo-Em Structure of Sulfolobus Acidocaldarius Rna Polymerase Without Stalk (No RPO4/RPO7)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of Sulfolobus Acidocaldarius Rna Polymerase Without Stalk (No RPO4/RPO7) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe1001

b:531.0
occ:1.00
FE4 D:SF41001 0.0 531.0 1.0
SG D:CYS203 2.1 410.7 1.0
CB D:CYS203 2.2 410.7 1.0
S3 D:SF41001 2.3 531.0 1.0
S1 D:SF41001 2.3 531.0 1.0
S2 D:SF41001 2.3 531.0 1.0
CA D:CYS203 2.6 410.7 1.0
FE2 D:SF41001 2.7 531.0 1.0
FE1 D:SF41001 2.7 531.0 1.0
FE3 D:SF41001 2.7 531.0 1.0
CG2 D:VAL187 3.4 531.0 1.0
C D:CYS203 3.6 410.7 1.0
SG D:CYS183 3.7 531.0 1.0
N D:CYS203 3.8 410.7 1.0
N D:ILE204 3.8 370.4 1.0
S4 D:SF41001 3.9 531.0 1.0
CB D:VAL187 4.0 531.0 1.0
CG1 D:VAL187 4.3 531.0 1.0
SG D:CYS209 4.3 531.0 1.0
O D:CYS203 4.6 410.7 1.0
SG D:CYS206 4.6 531.0 1.0
CG2 D:VAL170 4.7 402.6 1.0
C D:SER202 4.7 454.1 1.0
N D:LEU205 4.8 197.3 1.0
O D:SER202 4.8 454.1 1.0

Reference:

G.N.R.Fordjour, K.Murakami, J.-P.Armache, K.S.Murakami. Clamp Conformational Flexibility and Dynamics in Archaeal and Eukaryotic Rna Polymerases Revealed By Cryo-Em To Be Published.
Page generated: Sun Oct 4 10:38:54 2026

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