Iron in PDB 8rwn: Cryoem Structure of the Hdr(Abc)2 Subunits of the Elp-Hdr Complex of Methanothermobacter Marburgensis
Enzymatic activity of Cryoem Structure of the Hdr(Abc)2 Subunits of the Elp-Hdr Complex of Methanothermobacter Marburgensis
All present enzymatic activity of Cryoem Structure of the Hdr(Abc)2 Subunits of the Elp-Hdr Complex of Methanothermobacter Marburgensis:
1.8.98.5;
Iron Binding Sites:
Iron binding site 1 out
of 56 in 8rwn
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Iron Binding Sites List in 8rwn
Iron binding site 1 out
of 56 in the Cryoem Structure of the Hdr(Abc)2 Subunits of the Elp-Hdr Complex of Methanothermobacter Marburgensis
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Cryoem Structure of the Hdr(Abc)2 Subunits of the Elp-Hdr Complex of Methanothermobacter Marburgensis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
b:Fe401
b:21.9
occ:1.00
|
FE2
|
b:9S8401
|
0.0
|
21.9
|
1.0
|
S3
|
b:9S8401
|
2.1
|
10.5
|
1.0
|
SG
|
b:CYS153
|
2.4
|
7.8
|
1.0
|
SG
|
b:CYS193
|
2.4
|
17.3
|
1.0
|
S1
|
b:9S8401
|
2.5
|
10.9
|
1.0
|
FE4
|
b:9S8401
|
2.7
|
16.5
|
1.0
|
HB2
|
b:CYS193
|
3.0
|
4.9
|
1.0
|
CB
|
b:CYS193
|
3.2
|
2.1
|
1.0
|
HA
|
b:CYS193
|
3.2
|
3.8
|
1.0
|
H
|
b:CYS153
|
3.3
|
3.0
|
1.0
|
H
|
b:CYS194
|
3.3
|
4.1
|
1.0
|
HB2
|
b:CYS153
|
3.4
|
4.6
|
1.0
|
CB
|
b:CYS153
|
3.6
|
2.3
|
1.0
|
CA
|
b:CYS193
|
3.7
|
0.0
|
1.0
|
N
|
b:CYS194
|
3.9
|
0.0
|
1.0
|
H
|
b:GLY197
|
4.0
|
7.0
|
1.0
|
H
|
b:GLY195
|
4.0
|
4.7
|
1.0
|
HA
|
c:CYS82
|
4.0
|
3.7
|
1.0
|
FE9
|
b:9S8401
|
4.0
|
12.3
|
1.0
|
N
|
b:CYS153
|
4.0
|
0.0
|
1.0
|
HB3
|
b:CYS193
|
4.1
|
4.8
|
1.0
|
HA3
|
b:GLY197
|
4.1
|
9.3
|
1.0
|
HG1
|
c:THR80
|
4.2
|
6.5
|
1.0
|
HB3
|
c:CYS82
|
4.2
|
4.2
|
1.0
|
HB3
|
b:CYS153
|
4.3
|
5.0
|
1.0
|
HB
|
c:THR80
|
4.3
|
6.7
|
1.0
|
HB2
|
c:CYS82
|
4.3
|
4.3
|
1.0
|
C
|
b:CYS193
|
4.3
|
0.0
|
1.0
|
CA
|
b:CYS153
|
4.5
|
2.4
|
1.0
|
HA2
|
b:GLY152
|
4.5
|
7.8
|
1.0
|
S5
|
b:9S8401
|
4.6
|
7.5
|
1.0
|
CB
|
c:CYS82
|
4.6
|
0.0
|
1.0
|
OG1
|
c:THR80
|
4.6
|
4.5
|
1.0
|
N
|
b:GLY197
|
4.7
|
3.3
|
1.0
|
S7
|
b:9S8401
|
4.7
|
20.7
|
1.0
|
CA
|
c:CYS82
|
4.7
|
5.4
|
1.0
|
N
|
b:GLY195
|
4.8
|
0.0
|
1.0
|
CA
|
b:GLY197
|
4.8
|
0.9
|
1.0
|
H
|
b:ALA196
|
4.8
|
7.5
|
1.0
|
HE2
|
b:HIS150
|
4.9
|
7.1
|
1.0
|
N
|
b:CYS193
|
4.9
|
0.0
|
1.0
|
O
|
c:THR80
|
5.0
|
5.5
|
1.0
|
CB
|
c:THR80
|
5.0
|
0.0
|
1.0
|
|
Iron binding site 2 out
of 56 in 8rwn
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Iron Binding Sites List in 8rwn
Iron binding site 2 out
of 56 in the Cryoem Structure of the Hdr(Abc)2 Subunits of the Elp-Hdr Complex of Methanothermobacter Marburgensis
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Cryoem Structure of the Hdr(Abc)2 Subunits of the Elp-Hdr Complex of Methanothermobacter Marburgensis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
b:Fe401
b:16.5
occ:1.00
|
FE4
|
b:9S8401
|
0.0
|
16.5
|
1.0
|
S3
|
b:9S8401
|
2.3
|
10.5
|
1.0
|
S5
|
b:9S8401
|
2.5
|
7.5
|
1.0
|
S7
|
b:9S8401
|
2.5
|
20.7
|
1.0
|
S1
|
b:9S8401
|
2.6
|
10.9
|
1.0
|
FE9
|
b:9S8401
|
2.7
|
12.3
|
1.0
|
FE2
|
b:9S8401
|
2.7
|
21.9
|
1.0
|
FE6
|
b:9S8401
|
2.8
|
0.0
|
1.0
|
H
|
b:CYS153
|
3.2
|
3.0
|
1.0
|
O
|
b:HOH523
|
3.3
|
21.4
|
1.0
|
SG
|
b:CYS234
|
3.7
|
10.2
|
1.0
|
N
|
b:CYS153
|
4.1
|
0.0
|
1.0
|
HA3
|
b:GLY197
|
4.1
|
9.3
|
1.0
|
HB2
|
b:CYS153
|
4.1
|
4.6
|
1.0
|
H
|
b:HIS154
|
4.2
|
3.4
|
1.0
|
HA2
|
b:GLY152
|
4.2
|
7.8
|
1.0
|
SG
|
b:CYS153
|
4.3
|
7.8
|
1.0
|
H
|
b:GLY197
|
4.3
|
7.0
|
1.0
|
HE2
|
b:HIS150
|
4.4
|
7.1
|
1.0
|
HA3
|
b:GLY152
|
4.5
|
6.7
|
1.0
|
H
|
b:CYS194
|
4.5
|
4.1
|
1.0
|
HA2
|
b:GLY197
|
4.6
|
5.9
|
1.0
|
CB
|
b:CYS153
|
4.6
|
2.3
|
1.0
|
N
|
b:GLY197
|
4.6
|
3.3
|
1.0
|
CA
|
b:GLY197
|
4.7
|
0.9
|
1.0
|
CA
|
b:GLY152
|
4.7
|
1.4
|
1.0
|
SG
|
b:CYS194
|
4.7
|
16.9
|
1.0
|
ND1
|
b:HIS154
|
4.8
|
10.5
|
1.0
|
SG
|
b:CYS193
|
4.8
|
17.3
|
1.0
|
HD22
|
b:ASN79
|
4.8
|
6.6
|
1.0
|
HB3
|
b:PHE233
|
4.8
|
8.4
|
1.0
|
C
|
b:GLY152
|
4.8
|
0.0
|
1.0
|
CA
|
b:CYS153
|
4.9
|
2.4
|
1.0
|
N
|
b:HIS154
|
4.9
|
0.0
|
1.0
|
HB3
|
b:ALA196
|
4.9
|
6.0
|
1.0
|
HB2
|
b:HIS154
|
5.0
|
4.9
|
1.0
|
|
Iron binding site 3 out
of 56 in 8rwn
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Iron Binding Sites List in 8rwn
Iron binding site 3 out
of 56 in the Cryoem Structure of the Hdr(Abc)2 Subunits of the Elp-Hdr Complex of Methanothermobacter Marburgensis
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Cryoem Structure of the Hdr(Abc)2 Subunits of the Elp-Hdr Complex of Methanothermobacter Marburgensis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
b:Fe401
b:0.0
occ:1.00
|
FE6
|
b:9S8401
|
0.0
|
0.0
|
1.0
|
SG
|
b:CYS234
|
2.3
|
10.2
|
1.0
|
SG
|
b:CYS231
|
2.3
|
8.9
|
1.0
|
S7
|
b:9S8401
|
2.5
|
20.7
|
1.0
|
S5
|
b:9S8401
|
2.5
|
7.5
|
1.0
|
FE4
|
b:9S8401
|
2.8
|
16.5
|
1.0
|
H
|
b:CYS234
|
2.9
|
4.8
|
1.0
|
FE9
|
b:9S8401
|
3.0
|
12.3
|
1.0
|
HB3
|
b:CYS231
|
3.1
|
5.7
|
1.0
|
HB3
|
b:PHE233
|
3.1
|
8.4
|
1.0
|
CB
|
b:CYS231
|
3.2
|
0.0
|
1.0
|
HB2
|
b:ASN79
|
3.2
|
6.5
|
1.0
|
HB2
|
b:CYS231
|
3.3
|
4.9
|
1.0
|
N
|
b:CYS234
|
3.5
|
0.0
|
1.0
|
O
|
b:HOH523
|
3.6
|
21.4
|
1.0
|
CB
|
b:CYS234
|
3.6
|
3.1
|
1.0
|
HB2
|
b:CYS234
|
3.7
|
5.6
|
1.0
|
HD22
|
b:ASN79
|
3.9
|
6.6
|
1.0
|
CB
|
b:PHE233
|
3.9
|
6.4
|
1.0
|
CA
|
b:CYS234
|
4.0
|
3.6
|
1.0
|
HB2
|
b:PHE233
|
4.0
|
8.2
|
1.0
|
S1
|
b:9S8401
|
4.1
|
10.9
|
1.0
|
CB
|
b:ASN79
|
4.1
|
8.3
|
1.0
|
HA
|
b:CYS234
|
4.1
|
5.2
|
1.0
|
HA3
|
b:GLY152
|
4.1
|
6.7
|
1.0
|
HB3
|
b:ASN79
|
4.1
|
5.5
|
1.0
|
C
|
b:PHE233
|
4.3
|
2.5
|
1.0
|
HB3
|
b:CYS234
|
4.4
|
6.6
|
1.0
|
H
|
b:GLY80
|
4.4
|
4.7
|
1.0
|
HE2
|
b:HIS150
|
4.4
|
7.1
|
1.0
|
ND2
|
b:ASN79
|
4.5
|
3.0
|
1.0
|
H
|
b:PHE233
|
4.6
|
6.9
|
1.0
|
CA
|
b:CYS231
|
4.6
|
6.0
|
1.0
|
CA
|
b:PHE233
|
4.6
|
2.1
|
1.0
|
HA2
|
b:GLY152
|
4.7
|
7.8
|
1.0
|
HD2
|
b:PHE233
|
4.7
|
8.4
|
1.0
|
H
|
b:CYS153
|
4.7
|
3.0
|
1.0
|
CG
|
b:ASN79
|
4.8
|
2.8
|
1.0
|
CA
|
b:GLY152
|
4.8
|
1.4
|
1.0
|
N
|
b:GLY80
|
4.9
|
0.0
|
1.0
|
N
|
b:PHE233
|
4.9
|
0.8
|
1.0
|
O
|
b:CYS231
|
4.9
|
1.1
|
1.0
|
H
|
b:ASN79
|
4.9
|
5.8
|
1.0
|
HA
|
b:CYS231
|
5.0
|
6.9
|
1.0
|
|
Iron binding site 4 out
of 56 in 8rwn
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Iron Binding Sites List in 8rwn
Iron binding site 4 out
of 56 in the Cryoem Structure of the Hdr(Abc)2 Subunits of the Elp-Hdr Complex of Methanothermobacter Marburgensis
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Cryoem Structure of the Hdr(Abc)2 Subunits of the Elp-Hdr Complex of Methanothermobacter Marburgensis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
b:Fe401
b:12.3
occ:1.00
|
FE9
|
b:9S8401
|
0.0
|
12.3
|
1.0
|
SG
|
b:CYS234
|
2.2
|
10.2
|
1.0
|
S7
|
b:9S8401
|
2.3
|
20.7
|
1.0
|
SG
|
b:CYS194
|
2.4
|
16.9
|
1.0
|
S1
|
b:9S8401
|
2.6
|
10.9
|
1.0
|
FE4
|
b:9S8401
|
2.7
|
16.5
|
1.0
|
FE6
|
b:9S8401
|
3.0
|
0.0
|
1.0
|
HB3
|
b:CYS194
|
3.0
|
5.1
|
1.0
|
HA
|
b:CYS234
|
3.0
|
5.2
|
1.0
|
HE2
|
b:HIS150
|
3.1
|
7.1
|
1.0
|
CB
|
b:CYS194
|
3.3
|
3.5
|
1.0
|
CB
|
b:CYS234
|
3.4
|
3.1
|
1.0
|
H
|
b:CYS194
|
3.5
|
4.1
|
1.0
|
CA
|
b:CYS234
|
3.6
|
3.6
|
1.0
|
HB3
|
b:ALA196
|
3.6
|
6.0
|
1.0
|
HB3
|
b:CYS234
|
3.7
|
6.6
|
1.0
|
NE2
|
b:HIS150
|
3.9
|
3.4
|
1.0
|
N
|
b:CYS234
|
3.9
|
0.0
|
1.0
|
H
|
b:ALA196
|
3.9
|
7.5
|
1.0
|
H
|
b:CYS234
|
4.0
|
4.8
|
1.0
|
FE2
|
b:9S8401
|
4.0
|
21.9
|
1.0
|
HB2
|
b:CYS194
|
4.0
|
4.5
|
1.0
|
HB2
|
b:CYS234
|
4.2
|
5.6
|
1.0
|
N
|
b:CYS194
|
4.2
|
0.0
|
1.0
|
CA
|
b:CYS194
|
4.3
|
6.9
|
1.0
|
S5
|
b:9S8401
|
4.3
|
7.5
|
1.0
|
HB3
|
b:PHE233
|
4.4
|
8.4
|
1.0
|
HA2
|
b:GLY152
|
4.4
|
7.8
|
1.0
|
CB
|
b:ALA196
|
4.5
|
6.7
|
1.0
|
H
|
b:GLY197
|
4.6
|
7.0
|
1.0
|
S3
|
b:9S8401
|
4.6
|
10.5
|
1.0
|
HD2
|
b:PHE233
|
4.6
|
8.4
|
1.0
|
C
|
b:PHE233
|
4.7
|
2.5
|
1.0
|
CE1
|
b:HIS150
|
4.7
|
9.9
|
1.0
|
HE1
|
b:HIS150
|
4.7
|
6.3
|
1.0
|
HB3
|
b:GLN237
|
4.7
|
6.1
|
1.0
|
N
|
b:ALA196
|
4.7
|
6.6
|
1.0
|
H
|
b:GLY195
|
4.8
|
4.7
|
1.0
|
CD2
|
b:HIS150
|
4.8
|
0.0
|
1.0
|
HB2
|
b:ALA196
|
4.8
|
8.6
|
1.0
|
HD2
|
b:HIS150
|
4.8
|
5.7
|
1.0
|
H
|
b:CYS153
|
4.8
|
3.0
|
1.0
|
HA3
|
b:GLY152
|
4.9
|
6.7
|
1.0
|
C
|
b:CYS194
|
4.9
|
0.0
|
1.0
|
SG
|
b:CYS231
|
5.0
|
8.9
|
1.0
|
C
|
b:CYS234
|
5.0
|
0.0
|
1.0
|
HB3
|
b:CYS231
|
5.0
|
5.7
|
1.0
|
HG2
|
b:GLN237
|
5.0
|
6.5
|
1.0
|
O
|
b:PHE233
|
5.0
|
0.8
|
1.0
|
N
|
b:GLY197
|
5.0
|
3.3
|
1.0
|
|
Iron binding site 5 out
of 56 in 8rwn
Go back to
Iron Binding Sites List in 8rwn
Iron binding site 5 out
of 56 in the Cryoem Structure of the Hdr(Abc)2 Subunits of the Elp-Hdr Complex of Methanothermobacter Marburgensis
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Cryoem Structure of the Hdr(Abc)2 Subunits of the Elp-Hdr Complex of Methanothermobacter Marburgensis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
b:Fe402
b:21.3
occ:1.00
|
FE2
|
b:9S8402
|
0.0
|
21.3
|
1.0
|
SG
|
b:CYS9
|
2.3
|
12.1
|
1.0
|
SG
|
b:CYS41
|
2.3
|
14.1
|
1.0
|
S3
|
b:9S8402
|
2.4
|
15.0
|
1.0
|
S1
|
b:9S8402
|
2.5
|
15.4
|
1.0
|
HB2
|
b:CYS9
|
2.9
|
11.0
|
1.0
|
HA
|
b:CYS41
|
3.0
|
8.2
|
1.0
|
FE4
|
b:9S8402
|
3.0
|
25.9
|
1.0
|
H
|
c:GLY129
|
3.1
|
11.6
|
1.0
|
CB
|
b:CYS9
|
3.2
|
12.4
|
1.0
|
CB
|
b:CYS41
|
3.2
|
3.8
|
1.0
|
HB2
|
b:CYS41
|
3.3
|
9.3
|
1.0
|
H
|
b:CYS42
|
3.5
|
8.7
|
1.0
|
CA
|
b:CYS41
|
3.6
|
2.9
|
1.0
|
H
|
b:CYS9
|
3.8
|
12.1
|
1.0
|
HA3
|
c:GLY129
|
3.8
|
11.2
|
1.0
|
N
|
c:GLY129
|
3.9
|
12.9
|
1.0
|
HB3
|
b:CYS9
|
3.9
|
10.8
|
1.0
|
H
|
b:ALA44
|
3.9
|
10.3
|
1.0
|
HB2
|
b:ALA44
|
3.9
|
11.7
|
1.0
|
H
|
c:VAL130
|
3.9
|
12.9
|
1.0
|
N
|
b:CYS9
|
4.0
|
9.3
|
1.0
|
FE9
|
b:9S8402
|
4.1
|
23.0
|
1.0
|
HB3
|
b:CYS41
|
4.1
|
9.2
|
1.0
|
N
|
b:CYS42
|
4.2
|
7.4
|
1.0
|
CA
|
b:CYS9
|
4.2
|
7.9
|
1.0
|
HD1
|
c:HIS128
|
4.3
|
12.5
|
1.0
|
HA
|
c:HIS128
|
4.3
|
11.9
|
1.0
|
CA
|
c:GLY129
|
4.3
|
12.2
|
1.0
|
HA
|
b:PRO43
|
4.4
|
8.1
|
1.0
|
C
|
b:CYS41
|
4.4
|
5.5
|
1.0
|
N
|
b:ALA44
|
4.5
|
7.9
|
1.0
|
C
|
b:GLY8
|
4.6
|
9.4
|
1.0
|
HA2
|
b:GLY8
|
4.6
|
11.1
|
1.0
|
N
|
c:VAL130
|
4.6
|
15.9
|
1.0
|
HA
|
b:CYS9
|
4.7
|
10.6
|
1.0
|
N
|
b:CYS41
|
4.7
|
14.9
|
1.0
|
HG23
|
c:VAL130
|
4.8
|
11.2
|
1.0
|
CB
|
b:ALA44
|
4.8
|
16.5
|
1.0
|
S5
|
b:9S8402
|
4.8
|
7.6
|
1.0
|
C
|
c:HIS128
|
4.9
|
10.9
|
1.0
|
H
|
b:CYS41
|
5.0
|
10.4
|
1.0
|
HB3
|
c:HIS128
|
5.0
|
11.6
|
1.0
|
|
Iron binding site 6 out
of 56 in 8rwn
Go back to
Iron Binding Sites List in 8rwn
Iron binding site 6 out
of 56 in the Cryoem Structure of the Hdr(Abc)2 Subunits of the Elp-Hdr Complex of Methanothermobacter Marburgensis
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Cryoem Structure of the Hdr(Abc)2 Subunits of the Elp-Hdr Complex of Methanothermobacter Marburgensis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
b:Fe402
b:25.9
occ:1.00
|
FE4
|
b:9S8402
|
0.0
|
25.9
|
1.0
|
S5
|
b:9S8402
|
2.3
|
7.6
|
1.0
|
S3
|
b:9S8402
|
2.3
|
15.0
|
1.0
|
S1
|
b:9S8402
|
2.6
|
15.4
|
1.0
|
S7
|
b:9S8402
|
2.7
|
20.1
|
1.0
|
FE6
|
b:9S8402
|
2.9
|
41.5
|
1.0
|
FE9
|
b:9S8402
|
2.9
|
23.0
|
1.0
|
FE2
|
b:9S8402
|
3.0
|
21.3
|
1.0
|
H
|
b:CYS9
|
3.2
|
12.1
|
1.0
|
HB2
|
b:CYS9
|
3.3
|
11.0
|
1.0
|
HG13
|
b:ILE10
|
3.5
|
12.0
|
1.0
|
HD1
|
b:PHE233
|
3.7
|
9.0
|
1.0
|
H
|
b:ILE10
|
3.7
|
11.6
|
1.0
|
SG
|
b:CYS81
|
3.9
|
10.3
|
1.0
|
HE1
|
b:PHE233
|
3.9
|
8.8
|
1.0
|
N
|
b:CYS9
|
4.0
|
9.3
|
1.0
|
HB2
|
b:ALA44
|
4.0
|
11.7
|
1.0
|
CB
|
b:CYS9
|
4.1
|
12.4
|
1.0
|
HA3
|
b:GLY8
|
4.3
|
11.9
|
1.0
|
CD1
|
b:PHE233
|
4.4
|
8.2
|
1.0
|
CG1
|
b:ILE10
|
4.4
|
9.0
|
1.0
|
SG
|
b:CYS9
|
4.5
|
12.1
|
1.0
|
N
|
b:ILE10
|
4.5
|
6.8
|
1.0
|
CE1
|
b:PHE233
|
4.5
|
11.4
|
1.0
|
CA
|
b:CYS9
|
4.6
|
7.9
|
1.0
|
HA
|
b:ALA44
|
4.6
|
10.3
|
1.0
|
HD11
|
b:ILE10
|
4.7
|
11.9
|
1.0
|
HA2
|
b:GLY8
|
4.7
|
11.1
|
1.0
|
H
|
b:CYS42
|
4.8
|
8.7
|
1.0
|
CA
|
b:GLY8
|
4.8
|
8.8
|
1.0
|
SG
|
b:CYS41
|
4.8
|
14.1
|
1.0
|
HB
|
b:ILE10
|
4.8
|
11.7
|
1.0
|
C
|
b:GLY8
|
4.9
|
9.4
|
1.0
|
CB
|
b:ALA44
|
4.9
|
16.5
|
1.0
|
SG
|
b:CYS42
|
4.9
|
10.0
|
1.0
|
HD12
|
b:ILE10
|
4.9
|
11.1
|
1.0
|
HB3
|
b:CYS9
|
4.9
|
10.8
|
1.0
|
HG12
|
b:ILE10
|
4.9
|
11.0
|
1.0
|
O
|
b:HOH539
|
4.9
|
17.6
|
1.0
|
CD1
|
b:ILE10
|
4.9
|
12.9
|
1.0
|
O
|
b:HOH518
|
5.0
|
9.9
|
1.0
|
|
Iron binding site 7 out
of 56 in 8rwn
Go back to
Iron Binding Sites List in 8rwn
Iron binding site 7 out
of 56 in the Cryoem Structure of the Hdr(Abc)2 Subunits of the Elp-Hdr Complex of Methanothermobacter Marburgensis
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Cryoem Structure of the Hdr(Abc)2 Subunits of the Elp-Hdr Complex of Methanothermobacter Marburgensis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
b:Fe402
b:41.5
occ:1.00
|
FE6
|
b:9S8402
|
0.0
|
41.5
|
1.0
|
SG
|
b:CYS78
|
2.3
|
11.5
|
1.0
|
S5
|
b:9S8402
|
2.3
|
7.6
|
1.0
|
SG
|
b:CYS81
|
2.4
|
10.3
|
1.0
|
S7
|
b:9S8402
|
2.6
|
20.1
|
1.0
|
H
|
b:CYS81
|
2.8
|
4.3
|
1.0
|
FE4
|
b:9S8402
|
2.9
|
25.9
|
1.0
|
HB3
|
b:CYS78
|
3.1
|
5.8
|
1.0
|
CB
|
b:CYS78
|
3.1
|
1.4
|
1.0
|
FE9
|
b:9S8402
|
3.2
|
23.0
|
1.0
|
HB2
|
b:CYS78
|
3.3
|
6.6
|
1.0
|
N
|
b:CYS81
|
3.5
|
0.0
|
1.0
|
CB
|
b:CYS81
|
3.6
|
0.4
|
1.0
|
HB2
|
b:CYS81
|
3.7
|
6.3
|
1.0
|
HA3
|
b:GLY80
|
3.9
|
4.5
|
1.0
|
S1
|
b:9S8402
|
3.9
|
15.4
|
1.0
|
O
|
b:HOH518
|
4.0
|
9.9
|
1.0
|
HA3
|
b:GLY8
|
4.1
|
11.9
|
1.0
|
CA
|
b:CYS81
|
4.1
|
0.5
|
1.0
|
HD1
|
b:PHE233
|
4.1
|
9.0
|
1.0
|
H
|
b:GLY80
|
4.2
|
4.7
|
1.0
|
H
|
b:CYS9
|
4.3
|
12.1
|
1.0
|
HA
|
b:CYS81
|
4.3
|
5.8
|
1.0
|
C
|
b:GLY80
|
4.3
|
3.0
|
1.0
|
HD2
|
b:PRO232
|
4.3
|
6.9
|
1.0
|
HB3
|
b:CYS81
|
4.4
|
7.0
|
1.0
|
CA
|
b:GLY80
|
4.4
|
7.5
|
1.0
|
HB2
|
b:PHE233
|
4.5
|
8.2
|
1.0
|
HB2
|
b:PRO232
|
4.6
|
8.0
|
1.0
|
CA
|
b:CYS78
|
4.6
|
3.7
|
1.0
|
N
|
b:GLY80
|
4.6
|
0.0
|
1.0
|
H
|
b:ILE10
|
4.7
|
11.6
|
1.0
|
H
|
b:PHE233
|
4.7
|
6.9
|
1.0
|
HG13
|
b:ILE10
|
4.8
|
12.0
|
1.0
|
HG2
|
b:PRO232
|
4.9
|
9.6
|
1.0
|
HB
|
b:ILE10
|
4.9
|
11.7
|
1.0
|
CD1
|
b:PHE233
|
4.9
|
8.2
|
1.0
|
HA
|
b:CYS78
|
4.9
|
7.1
|
1.0
|
CA
|
b:GLY8
|
4.9
|
8.8
|
1.0
|
C
|
b:CYS78
|
5.0
|
1.2
|
1.0
|
|
Iron binding site 8 out
of 56 in 8rwn
Go back to
Iron Binding Sites List in 8rwn
Iron binding site 8 out
of 56 in the Cryoem Structure of the Hdr(Abc)2 Subunits of the Elp-Hdr Complex of Methanothermobacter Marburgensis
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Cryoem Structure of the Hdr(Abc)2 Subunits of the Elp-Hdr Complex of Methanothermobacter Marburgensis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
b:Fe402
b:23.0
occ:1.00
|
FE9
|
b:9S8402
|
0.0
|
23.0
|
1.0
|
S1
|
b:9S8402
|
2.2
|
15.4
|
1.0
|
SG
|
b:CYS42
|
2.3
|
10.0
|
1.0
|
SG
|
b:CYS81
|
2.3
|
10.3
|
1.0
|
S7
|
b:9S8402
|
2.6
|
20.1
|
1.0
|
HB3
|
b:CYS42
|
2.7
|
7.0
|
1.0
|
FE4
|
b:9S8402
|
2.9
|
25.9
|
1.0
|
HA
|
b:CYS81
|
3.0
|
5.8
|
1.0
|
CB
|
b:CYS42
|
3.0
|
0.0
|
1.0
|
H
|
b:CYS42
|
3.1
|
8.7
|
1.0
|
FE6
|
b:9S8402
|
3.2
|
41.5
|
1.0
|
CB
|
b:CYS81
|
3.4
|
0.4
|
1.0
|
CA
|
b:CYS81
|
3.5
|
0.5
|
1.0
|
HB3
|
b:CYS81
|
3.7
|
7.0
|
1.0
|
HE2
|
b:PHE6
|
3.7
|
10.4
|
1.0
|
N
|
b:CYS81
|
3.7
|
0.0
|
1.0
|
HB2
|
b:CYS42
|
3.8
|
9.0
|
1.0
|
HA
|
b:ALA44
|
3.8
|
10.3
|
1.0
|
N
|
b:CYS42
|
3.8
|
7.4
|
1.0
|
H
|
b:CYS81
|
3.8
|
4.3
|
1.0
|
CA
|
b:CYS42
|
4.1
|
10.7
|
1.0
|
FE2
|
b:9S8402
|
4.1
|
21.3
|
1.0
|
HA2
|
b:GLY8
|
4.1
|
11.1
|
1.0
|
HB2
|
b:CYS81
|
4.2
|
6.3
|
1.0
|
HA3
|
b:GLY8
|
4.3
|
11.9
|
1.0
|
S5
|
b:9S8402
|
4.4
|
7.6
|
1.0
|
C
|
b:GLY80
|
4.4
|
3.0
|
1.0
|
N
|
b:ALA44
|
4.4
|
7.9
|
1.0
|
H
|
b:ALA44
|
4.5
|
10.3
|
1.0
|
CA
|
b:ALA44
|
4.5
|
15.4
|
1.0
|
CE2
|
b:PHE6
|
4.6
|
11.2
|
1.0
|
HB2
|
b:ALA44
|
4.6
|
11.7
|
1.0
|
HD3
|
b:PRO45
|
4.6
|
11.8
|
1.0
|
HA
|
b:CYS42
|
4.6
|
8.6
|
1.0
|
S3
|
b:9S8402
|
4.6
|
15.0
|
1.0
|
C
|
b:PRO43
|
4.6
|
10.2
|
1.0
|
HA
|
b:PRO43
|
4.7
|
8.1
|
1.0
|
CA
|
b:GLY8
|
4.7
|
8.8
|
1.0
|
H
|
b:CYS9
|
4.7
|
12.1
|
1.0
|
HZ
|
b:PHE6
|
4.7
|
10.3
|
1.0
|
O
|
b:GLY80
|
4.7
|
1.0
|
1.0
|
HA
|
b:CYS41
|
4.8
|
8.2
|
1.0
|
HB3
|
b:SER84
|
4.8
|
8.2
|
1.0
|
SG
|
b:CYS41
|
4.8
|
14.1
|
1.0
|
HA3
|
b:GLY80
|
4.8
|
4.5
|
1.0
|
C
|
b:CYS81
|
4.9
|
0.0
|
1.0
|
HD2
|
b:PRO45
|
4.9
|
12.2
|
1.0
|
|
Iron binding site 9 out
of 56 in 8rwn
Go back to
Iron Binding Sites List in 8rwn
Iron binding site 9 out
of 56 in the Cryoem Structure of the Hdr(Abc)2 Subunits of the Elp-Hdr Complex of Methanothermobacter Marburgensis
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Cryoem Structure of the Hdr(Abc)2 Subunits of the Elp-Hdr Complex of Methanothermobacter Marburgensis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe401
b:33.3
occ:1.00
|
FE2
|
B:9S8401
|
0.0
|
33.3
|
1.0
|
SG
|
B:CYS234
|
2.3
|
9.8
|
1.0
|
SG
|
B:CYS231
|
2.4
|
12.5
|
1.0
|
S1
|
B:9S8401
|
2.5
|
28.7
|
1.0
|
S3
|
B:9S8401
|
2.5
|
13.1
|
1.0
|
FE4
|
B:9S8401
|
2.8
|
20.5
|
1.0
|
H
|
B:CYS234
|
2.9
|
5.5
|
1.0
|
FE9
|
B:9S8401
|
3.0
|
28.2
|
1.0
|
HB3
|
B:CYS231
|
3.1
|
6.3
|
1.0
|
HB3
|
B:PHE233
|
3.1
|
8.2
|
1.0
|
CB
|
B:CYS231
|
3.2
|
2.0
|
1.0
|
HB2
|
B:ASN79
|
3.3
|
7.2
|
1.0
|
HB2
|
B:CYS231
|
3.3
|
4.8
|
1.0
|
N
|
B:CYS234
|
3.5
|
0.0
|
1.0
|
CB
|
B:CYS234
|
3.5
|
4.2
|
1.0
|
O
|
B:HOH520
|
3.5
|
18.6
|
1.0
|
HB2
|
B:CYS234
|
3.6
|
5.7
|
1.0
|
HD22
|
B:ASN79
|
3.9
|
7.0
|
1.0
|
CB
|
B:PHE233
|
4.0
|
7.8
|
1.0
|
CA
|
B:CYS234
|
4.0
|
4.6
|
1.0
|
HB2
|
B:PHE233
|
4.0
|
8.6
|
1.0
|
S7
|
B:9S8401
|
4.1
|
30.1
|
1.0
|
CB
|
B:ASN79
|
4.1
|
8.8
|
1.0
|
HA
|
B:CYS234
|
4.1
|
5.6
|
1.0
|
HB3
|
B:ASN79
|
4.2
|
6.0
|
1.0
|
HA3
|
B:GLY152
|
4.2
|
7.0
|
1.0
|
HB3
|
B:CYS234
|
4.3
|
7.0
|
1.0
|
C
|
B:PHE233
|
4.3
|
0.6
|
1.0
|
H
|
B:GLY80
|
4.4
|
5.3
|
1.0
|
HE2
|
B:HIS150
|
4.5
|
6.6
|
1.0
|
H
|
B:CYS153
|
4.5
|
5.2
|
1.0
|
ND2
|
B:ASN79
|
4.6
|
5.9
|
1.0
|
H
|
B:PHE233
|
4.6
|
7.5
|
1.0
|
CA
|
B:CYS231
|
4.6
|
6.6
|
1.0
|
CA
|
B:PHE233
|
4.6
|
2.9
|
1.0
|
HA2
|
B:GLY152
|
4.7
|
7.7
|
1.0
|
HD2
|
B:PHE233
|
4.7
|
8.7
|
1.0
|
N
|
B:GLY80
|
4.8
|
1.8
|
1.0
|
CG
|
B:ASN79
|
4.8
|
1.0
|
1.0
|
N
|
B:PHE233
|
4.9
|
3.7
|
1.0
|
CA
|
B:GLY152
|
4.9
|
0.0
|
1.0
|
O
|
B:CYS231
|
4.9
|
0.0
|
1.0
|
H
|
B:ASN79
|
5.0
|
6.8
|
1.0
|
HA
|
B:CYS231
|
5.0
|
7.5
|
1.0
|
|
Iron binding site 10 out
of 56 in 8rwn
Go back to
Iron Binding Sites List in 8rwn
Iron binding site 10 out
of 56 in the Cryoem Structure of the Hdr(Abc)2 Subunits of the Elp-Hdr Complex of Methanothermobacter Marburgensis
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Cryoem Structure of the Hdr(Abc)2 Subunits of the Elp-Hdr Complex of Methanothermobacter Marburgensis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe401
b:20.5
occ:1.00
|
FE4
|
B:9S8401
|
0.0
|
20.5
|
1.0
|
S5
|
B:9S8401
|
2.3
|
12.2
|
1.0
|
S3
|
B:9S8401
|
2.5
|
13.1
|
1.0
|
S1
|
B:9S8401
|
2.5
|
28.7
|
1.0
|
S7
|
B:9S8401
|
2.5
|
30.1
|
1.0
|
FE9
|
B:9S8401
|
2.6
|
28.2
|
1.0
|
FE6
|
B:9S8401
|
2.7
|
16.4
|
1.0
|
FE2
|
B:9S8401
|
2.8
|
33.3
|
1.0
|
H
|
B:CYS153
|
3.3
|
5.2
|
1.0
|
O
|
B:HOH520
|
3.3
|
18.6
|
1.0
|
SG
|
B:CYS234
|
3.5
|
9.8
|
1.0
|
HB2
|
B:CYS153
|
3.9
|
5.1
|
1.0
|
HA3
|
B:GLY197
|
4.1
|
9.9
|
1.0
|
N
|
B:CYS153
|
4.1
|
0.0
|
1.0
|
SG
|
B:CYS153
|
4.2
|
1.5
|
1.0
|
HA2
|
B:GLY152
|
4.2
|
7.7
|
1.0
|
H
|
B:HIS154
|
4.3
|
3.5
|
1.0
|
H
|
B:GLY197
|
4.3
|
7.5
|
1.0
|
HE2
|
B:HIS150
|
4.4
|
6.6
|
1.0
|
HA3
|
B:GLY152
|
4.5
|
7.0
|
1.0
|
CB
|
B:CYS153
|
4.5
|
5.8
|
1.0
|
H
|
B:CYS194
|
4.5
|
4.7
|
1.0
|
HA2
|
B:GLY197
|
4.6
|
6.0
|
1.0
|
N
|
B:GLY197
|
4.6
|
6.2
|
1.0
|
CA
|
B:GLY197
|
4.7
|
2.5
|
1.0
|
CA
|
B:GLY152
|
4.7
|
0.0
|
1.0
|
ND1
|
B:HIS154
|
4.8
|
10.8
|
1.0
|
SG
|
B:CYS194
|
4.8
|
13.7
|
1.0
|
HB3
|
B:PHE233
|
4.8
|
8.2
|
1.0
|
SG
|
B:CYS193
|
4.8
|
15.0
|
1.0
|
CA
|
B:CYS153
|
4.9
|
4.7
|
1.0
|
HD22
|
B:ASN79
|
4.9
|
7.0
|
1.0
|
HB3
|
B:ALA196
|
4.9
|
6.6
|
1.0
|
C
|
B:GLY152
|
5.0
|
1.8
|
1.0
|
CE1
|
B:HIS154
|
5.0
|
7.2
|
1.0
|
N
|
B:HIS154
|
5.0
|
0.0
|
1.0
|
|
Reference:
S.Nomura,
P.San Segundo-Acosta,
J.Khant,
B.J.Murphy,
S.Shima.
Altered Electron Flow in Hydrogenotrophic Methanogens Under Nickel Limitation To Be Published.
Page generated: Thu Aug 7 22:41:05 2025
|