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Iron in PDB 8vqh: Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor

Enzymatic activity of Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor

All present enzymatic activity of Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor:
1.3.7.7;

Other elements in 8vqh:

The structure of Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor also contains other interesting chemical elements:

Copper (Cu) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor (pdb code 8vqh). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor, PDB code: 8vqh:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 8vqh

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Iron binding site 1 out of 8 in the Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:111.0
occ:1.00
 FE1 A:SF4501 0.0 111.0 1.0
S4 A:SF4501 2.3 85.5 1.0
S3 A:SF4501 2.3 96.6 1.0
S2 A:SF4501 2.3 95.1 1.0
SG A:CYS29 2.4 35.7 1.0
CB A:CYS29 2.6 46.1 1.0
FE2 A:SF4501 2.7 109.1 1.0
FE3 A:SF4501 2.7 109.7 1.0
FE4 A:SF4501 2.7 114.2 1.0
SG A:CYS115 3.8 39.4 1.0
S1 A:SF4501 3.9 96.0 1.0
SG A:CYS54 3.9 39.5 1.0
CA A:CYS29 4.1 42.9 1.0
N A:GLY148 4.3 41.8 1.0
OD1 B:ASP36 4.3 38.6 1.0
CD1 A:LEU31 4.5 37.0 1.0
O B:GLY35 4.5 31.0 1.0
CD1 A:LEU57 4.5 39.4 1.0
CG A:LEU31 4.6 31.2 1.0
CA A:GLY148 4.6 42.5 1.0
N A:CYS29 4.6 52.6 1.0
C B:GLY35 4.7 35.4 1.0
CD2 A:LEU57 4.9 34.9 1.0
C A:CYS29 4.9 37.7 1.0

Iron binding site 2 out of 8 in 8vqh

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Iron binding site 2 out of 8 in the Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:109.1
occ:1.00
 FE2 A:SF4501 0.0 109.1 1.0
OD1 B:ASP36 1.9 38.6 1.0
S4 A:SF4501 2.3 85.5 1.0
S3 A:SF4501 2.3 96.6 1.0
S1 A:SF4501 2.3 96.0 1.0
FE1 A:SF4501 2.7 111.0 1.0
FE3 A:SF4501 2.7 109.7 1.0
FE4 A:SF4501 2.7 114.2 1.0
CG B:ASP36 3.1 38.2 1.0
OD2 B:ASP36 3.7 43.0 1.0
S2 A:SF4501 3.9 95.1 1.0
SG A:CYS54 3.9 39.5 1.0
SG A:CYS115 4.0 39.4 1.0
CB B:ASP36 4.1 29.9 1.0
CA B:ASP36 4.2 34.9 1.0
CG2 A:THR53 4.2 24.1 1.0
CG B:PRO33 4.2 29.4 1.0
N B:ASP36 4.4 35.1 1.0
O B:GLY35 4.5 31.0 1.0
C B:GLY35 4.6 35.4 1.0
CB A:THR53 4.7 23.4 1.0
SG A:CYS29 4.9 35.7 1.0
CB A:CYS29 4.9 46.1 1.0
N A:CYS54 5.0 30.8 1.0

Iron binding site 3 out of 8 in 8vqh

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Iron binding site 3 out of 8 in the Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:109.7
occ:1.00
 FE3 A:SF4501 0.0 109.7 1.0
SG A:CYS54 1.3 39.5 1.0
S1 A:SF4501 2.3 96.0 1.0
S2 A:SF4501 2.3 95.1 1.0
S4 A:SF4501 2.3 85.5 1.0
FE4 A:SF4501 2.7 114.2 1.0
FE2 A:SF4501 2.7 109.1 1.0
FE1 A:SF4501 2.7 111.0 1.0
CB A:CYS54 3.0 28.4 1.0
CA A:CYS54 3.5 32.3 1.0
SG A:CYS115 3.8 39.4 1.0
S3 A:SF4501 3.8 96.6 1.0
N A:CYS54 3.9 30.8 1.0
CD1 A:LEU31 4.0 37.0 1.0
OD1 B:ASP36 4.5 38.6 1.0
CD A:PRO116 4.6 40.5 1.0
CB A:SER114 4.6 33.4 1.0
N A:CYS115 4.6 40.1 1.0
SG A:CYS29 4.6 35.7 1.0
C A:THR53 4.7 22.7 1.0
CB A:CYS115 4.7 42.3 1.0
C A:CYS54 4.9 30.6 1.0
CG A:LEU31 4.9 31.2 1.0

Iron binding site 4 out of 8 in 8vqh

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Iron binding site 4 out of 8 in the Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:114.2
occ:1.00
 FE4 A:SF4501 0.0 114.2 1.0
SG A:CYS115 1.3 39.4 1.0
S2 A:SF4501 2.3 95.1 1.0
S3 A:SF4501 2.3 96.6 1.0
S1 A:SF4501 2.3 96.0 1.0
FE3 A:SF4501 2.7 109.7 1.0
FE2 A:SF4501 2.7 109.1 1.0
FE1 A:SF4501 2.7 111.0 1.0
CB A:CYS115 2.8 42.3 1.0
N A:CYS115 3.7 40.1 1.0
N A:GLY148 3.8 41.8 1.0
SG A:CYS54 3.8 39.5 1.0
CA A:CYS115 3.8 40.1 1.0
S4 A:SF4501 3.9 85.5 1.0
CG B:PRO33 4.0 29.4 1.0
OD1 B:ASP36 4.3 38.6 1.0
CA A:GLY148 4.3 42.5 1.0
OG1 B:THR96 4.5 47.3 1.0
CB B:PRO33 4.5 38.2 1.0
CD A:PRO116 4.6 40.5 1.0
CB A:CYS29 4.6 46.1 1.0
OG A:SER147 4.8 49.6 1.0
C A:SER147 4.8 40.8 1.0
CA A:SER147 4.9 37.8 1.0
C A:SER114 4.9 31.7 1.0
SG A:CYS29 5.0 35.7 1.0
C A:CYS115 5.0 44.7 1.0

Iron binding site 5 out of 8 in 8vqh

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Iron binding site 5 out of 8 in the Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe501

b:102.9
occ:1.00
 FE1 C:SF4501 0.0 102.9 1.0
S2 C:SF4501 2.2 84.5 1.0
S3 C:SF4501 2.3 84.5 1.0
S4 C:SF4501 2.3 86.6 1.0
SG C:CYS29 2.3 30.1 1.0
FE4 C:SF4501 2.7 106.0 1.0
FE3 C:SF4501 2.7 105.4 1.0
FE2 C:SF4501 2.7 95.8 1.0
CB C:CYS29 2.8 48.6 1.0
SG C:CYS54 3.8 39.1 1.0
SG C:CYS115 3.8 33.1 1.0
S1 C:SF4501 3.8 78.2 1.0
OD1 D:ASP36 4.0 38.2 1.0
CA C:CYS29 4.2 39.9 1.0
N C:GLY148 4.3 24.3 1.0
O D:GLY35 4.4 37.9 1.0
N C:CYS29 4.5 39.1 1.0
CD1 C:LEU31 4.5 36.1 1.0
CG C:LEU31 4.7 34.3 1.0
C D:GLY35 4.8 38.7 1.0
CA C:GLY148 4.9 35.4 1.0
O C:GLY146 4.9 31.1 1.0

Iron binding site 6 out of 8 in 8vqh

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Iron binding site 6 out of 8 in the Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe501

b:95.8
occ:1.00
 FE2 C:SF4501 0.0 95.8 1.0
OD1 D:ASP36 1.6 38.2 1.0
S4 C:SF4501 2.3 86.6 1.0
S3 C:SF4501 2.3 84.5 1.0
S1 C:SF4501 2.3 78.2 1.0
FE3 C:SF4501 2.7 105.4 1.0
FE1 C:SF4501 2.7 102.9 1.0
CG D:ASP36 2.7 34.1 1.0
FE4 C:SF4501 2.7 106.0 1.0
OD2 D:ASP36 3.3 31.1 1.0
S2 C:SF4501 3.9 84.5 1.0
CB D:ASP36 3.9 31.6 1.0
SG C:CYS115 4.0 33.1 1.0
SG C:CYS54 4.0 39.1 1.0
CA D:ASP36 4.1 38.9 1.0
CG D:PRO33 4.2 29.2 1.0
N D:ASP36 4.3 42.0 1.0
O D:GLY35 4.4 37.9 1.0
CG2 C:THR53 4.5 22.3 1.0
C D:GLY35 4.5 38.7 1.0
SG C:CYS29 4.5 30.1 1.0
CB C:THR53 4.7 23.1 1.0
CE2 D:TYR38 4.9 25.2 1.0

Iron binding site 7 out of 8 in 8vqh

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Iron binding site 7 out of 8 in the Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe501

b:105.4
occ:1.00
 FE3 C:SF4501 0.0 105.4 1.0
SG C:CYS54 1.4 39.1 1.0
S1 C:SF4501 2.2 78.2 1.0
S4 C:SF4501 2.3 86.6 1.0
S2 C:SF4501 2.3 84.5 1.0
FE1 C:SF4501 2.7 102.9 1.0
FE2 C:SF4501 2.7 95.8 1.0
FE4 C:SF4501 2.7 106.0 1.0
CB C:CYS54 3.0 28.1 1.0
OG C:SER114 3.5 50.0 1.0
CA C:CYS54 3.6 31.1 1.0
SG C:CYS115 3.8 33.1 1.0
N C:CYS54 3.8 35.3 1.0
S3 C:SF4501 3.8 84.5 1.0
OD1 D:ASP36 4.3 38.2 1.0
CD1 C:LEU31 4.4 36.1 1.0
C C:THR53 4.6 26.8 1.0
CD C:PRO116 4.7 51.6 1.0
SG C:CYS29 4.7 30.1 1.0
N C:CYS115 4.7 45.0 1.0
CB C:SER114 4.8 43.6 1.0
CB C:CYS115 4.8 44.1 1.0
CB C:THR53 4.9 23.1 1.0
C C:CYS54 5.0 27.6 1.0

Iron binding site 8 out of 8 in 8vqh

Go back to Iron Binding Sites List in 8vqh
Iron binding site 8 out of 8 in the Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe501

b:106.0
occ:1.00
 FE4 C:SF4501 0.0 106.0 1.0
SG C:CYS115 1.3 33.1 1.0
S3 C:SF4501 2.3 84.5 1.0
S2 C:SF4501 2.3 84.5 1.0
S1 C:SF4501 2.3 78.2 1.0
FE1 C:SF4501 2.7 102.9 1.0
FE2 C:SF4501 2.7 95.8 1.0
FE3 C:SF4501 2.7 105.4 1.0
CB C:CYS115 2.9 44.1 1.0
N C:CYS115 3.7 45.0 1.0
S4 C:SF4501 3.9 86.6 1.0
CA C:CYS115 3.9 45.1 1.0
SG C:CYS54 3.9 39.1 1.0
CG D:PRO33 4.0 29.2 1.0
N C:GLY148 4.0 24.3 1.0
OD1 D:ASP36 4.1 38.2 1.0
OG C:SER114 4.2 50.0 1.0
CB D:PRO33 4.4 25.1 1.0
OG1 D:THR96 4.7 48.1 1.0
CD C:PRO116 4.7 51.6 1.0
CA C:GLY148 4.7 35.4 1.0
CB C:CYS29 4.8 48.6 1.0
CA C:SER147 4.9 34.3 1.0
CG D:ASP36 4.9 34.1 1.0
SG C:CYS29 4.9 30.1 1.0
C C:SER114 4.9 45.5 1.0
C C:SER147 5.0 34.0 1.0

Reference:

R.Kashyap, E.Antony. Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor To Be Published.
Page generated: Fri Aug 8 00:08:10 2025

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