Iron in PDB 8vqj: Cryoem Structure of Dpor Under Turnover

All present enzymatic activity of Cryoem Structure of Dpor Under Turnover:
1.3.7.7;

The structure of Cryoem Structure of Dpor Under Turnover also contains other interesting chemical elements:

Copper	(Cu)	2 atoms
Magnesium	(Mg)	4 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Cryoem Structure of Dpor Under Turnover (pdb code 8vqj). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Cryoem Structure of Dpor Under Turnover, PDB code: 8vqj:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in the Cryoem Structure of Dpor Under Turnover


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryoem Structure of Dpor Under Turnover within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:163.5 occ:1.00 FE1 A:SF4501 0.0 163.5 1.0 SG A:CYS29 1.2 123.0 1.0 S2 A:SF4501 2.3 163.5 1.0 S4 A:SF4501 2.3 163.5 1.0 S3 A:SF4501 2.3 163.5 1.0 FE2 A:SF4501 2.7 163.5 1.0 FE3 A:SF4501 2.7 163.5 1.0 FE4 A:SF4501 2.7 163.5 1.0 CB A:CYS29 2.7 123.0 1.0 O B:GLY35 3.8 134.3 1.0 SG A:CYS115 3.9 134.6 1.0 S1 A:SF4501 3.9 163.5 1.0 SG A:CYS54 3.9 112.2 1.0 C B:GLY35 3.9 134.3 1.0 CA A:CYS29 4.0 123.0 1.0 N B:ASP36 4.1 129.2 1.0 CD2 A:LEU57 4.2 106.9 1.0 N A:CYS29 4.4 123.0 1.0 CA B:ASP36 4.4 129.2 1.0 N A:GLY148 4.6 123.0 1.0 CA B:GLY35 4.6 134.3 1.0 CB B:ASP36 4.8 129.2 1.0 O B:GLN34 4.9 136.5 1.0 CG B:ASP36 5.0 129.2 1.0 CA A:GLY148 5.0 123.0 1.0

Iron binding site 2 out of 12 in the Cryoem Structure of Dpor Under Turnover


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryoem Structure of Dpor Under Turnover within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:163.5 occ:1.00 FE2 A:SF4501 0.0 163.5 1.0 S1 A:SF4501 2.3 163.5 1.0 S4 A:SF4501 2.3 163.5 1.0 S3 A:SF4501 2.3 163.5 1.0 CG B:ASP36 2.6 129.2 1.0 FE1 A:SF4501 2.7 163.5 1.0 FE3 A:SF4501 2.7 163.5 1.0 FE4 A:SF4501 2.7 163.5 1.0 OD2 B:ASP36 2.8 129.2 1.0 CB B:ASP36 2.9 129.2 1.0 OD1 B:ASP36 3.0 129.2 1.0 CA B:ASP36 3.4 129.2 1.0 SG A:CYS29 3.7 123.0 1.0 N B:ASP36 3.8 129.2 1.0 S2 A:SF4501 3.9 163.5 1.0 SG A:CYS115 3.9 134.6 1.0 SG A:CYS54 3.9 112.2 1.0 CG B:PRO33 3.9 130.8 1.0 C B:GLY35 4.5 134.3 1.0 O B:GLY35 4.6 134.3 1.0 CG2 A:THR53 4.7 107.5 1.0 C B:ASP36 4.8 129.2 1.0 CD B:PRO33 4.8 130.8 1.0 CB A:THR53 5.0 107.5 1.0 CB B:PRO33 5.0 130.8 1.0 CB A:CYS115 5.0 134.6 1.0

Iron binding site 3 out of 12 in the Cryoem Structure of Dpor Under Turnover


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryoem Structure of Dpor Under Turnover within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:163.5 occ:1.00 FE3 A:SF4501 0.0 163.5 1.0 SG A:CYS54 1.3 112.2 1.0 S4 A:SF4501 2.3 163.5 1.0 S1 A:SF4501 2.3 163.5 1.0 S2 A:SF4501 2.3 163.5 1.0 FE1 A:SF4501 2.7 163.5 1.0 FE4 A:SF4501 2.7 163.5 1.0 FE2 A:SF4501 2.7 163.5 1.0 CB A:CYS54 2.9 112.2 1.0 CA A:CYS54 3.4 112.2 1.0 SG A:CYS29 3.8 123.0 1.0 N A:CYS54 3.8 112.2 1.0 SG A:CYS115 3.8 134.6 1.0 S3 A:SF4501 3.9 163.5 1.0 CD2 A:LEU31 4.4 121.4 1.0 C A:THR53 4.7 107.5 1.0 CB A:CYS115 4.8 134.6 1.0 C A:CYS54 4.8 112.2 1.0 CB A:CYS29 4.9 123.0 1.0 N A:CYS115 4.9 134.6 1.0

Iron binding site 4 out of 12 in the Cryoem Structure of Dpor Under Turnover


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryoem Structure of Dpor Under Turnover within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:163.5 occ:1.00 FE4 A:SF4501 0.0 163.5 1.0 SG A:CYS115 1.3 134.6 1.0 S3 A:SF4501 2.3 163.5 1.0 S2 A:SF4501 2.3 163.5 1.0 S1 A:SF4501 2.3 163.5 1.0 FE3 A:SF4501 2.7 163.5 1.0 FE2 A:SF4501 2.7 163.5 1.0 FE1 A:SF4501 2.7 163.5 1.0 CB A:CYS115 2.8 134.6 1.0 SG A:CYS54 3.6 112.2 1.0 OG A:SER147 3.7 123.2 1.0 N A:CYS115 3.7 134.6 1.0 SG A:CYS29 3.8 123.0 1.0 S4 A:SF4501 3.9 163.5 1.0 CA A:CYS115 3.9 134.6 1.0 CG B:PRO33 4.0 130.8 1.0 N A:GLY148 4.4 123.0 1.0 CB B:PRO33 4.5 130.8 1.0 CD1 A:ILE149 4.6 127.9 1.0 C A:SER114 5.0 129.4 1.0 CB A:SER147 5.0 123.2 1.0 CD A:PRO116 5.0 130.2 1.0 CB A:CYS29 5.0 123.0 1.0

Iron binding site 5 out of 12 in the Cryoem Structure of Dpor Under Turnover


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryoem Structure of Dpor Under Turnover within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe501 b:206.7 occ:1.00 FE1 C:SF4501 0.0 206.7 1.0 SG C:CYS29 1.4 155.9 1.0 S2 C:SF4501 2.3 206.7 1.0 S4 C:SF4501 2.3 206.7 1.0 S3 C:SF4501 2.3 206.7 1.0 CB C:CYS29 2.4 155.9 1.0 FE3 C:SF4501 2.7 206.7 1.0 FE2 C:SF4501 2.7 206.7 1.0 FE4 C:SF4501 2.7 206.7 1.0 SG C:CYS54 3.8 142.4 1.0 OD1 D:ASP36 3.8 155.4 1.0 SG C:CYS115 3.8 155.4 1.0 CA C:CYS29 3.8 155.9 1.0 S1 C:SF4501 3.9 206.7 1.0 N C:CYS29 4.3 155.9 1.0 CD2 C:LEU57 4.3 136.4 1.0 C C:CYS29 4.4 155.9 1.0 C D:GLY35 4.5 160.5 1.0 O D:GLY35 4.5 160.5 1.0 N C:GLY148 4.6 157.4 1.0 CD1 C:LEU31 4.6 150.1 1.0 CA D:GLY35 4.7 160.5 1.0 CG C:LEU31 4.7 150.1 1.0 O C:CYS29 4.9 155.9 1.0 CA C:GLY148 4.9 157.4 1.0 N D:ASP36 4.9 155.4 1.0 O C:GLY146 5.0 151.0 1.0 CG D:ASP36 5.0 155.4 1.0

Iron binding site 6 out of 12 in the Cryoem Structure of Dpor Under Turnover


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryoem Structure of Dpor Under Turnover within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe501 b:206.7 occ:1.00 FE2 C:SF4501 0.0 206.7 1.0 OD1 D:ASP36 1.5 155.4 1.0 S1 C:SF4501 2.3 206.7 1.0 S4 C:SF4501 2.3 206.7 1.0 S3 C:SF4501 2.3 206.7 1.0 CG D:ASP36 2.5 155.4 1.0 FE1 C:SF4501 2.7 206.7 1.0 FE3 C:SF4501 2.7 206.7 1.0 FE4 C:SF4501 2.7 206.7 1.0 OD2 D:ASP36 3.1 155.4 1.0 SG C:CYS54 3.8 142.4 1.0 CB D:ASP36 3.8 155.4 1.0 CG D:PRO33 3.9 153.4 1.0 S2 C:SF4501 3.9 206.7 1.0 SG C:CYS29 4.0 155.9 1.0 N D:ASP36 4.0 155.4 1.0 CA D:ASP36 4.1 155.4 1.0 SG C:CYS115 4.1 155.4 1.0 C D:GLY35 4.4 160.5 1.0 CG2 C:THR53 4.5 143.0 1.0 O D:GLY35 4.6 160.5 1.0 CB C:CYS29 4.7 155.9 1.0 CD D:PRO33 4.7 153.4 1.0

Iron binding site 7 out of 12 in the Cryoem Structure of Dpor Under Turnover


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryoem Structure of Dpor Under Turnover within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe501 b:206.7 occ:1.00 FE3 C:SF4501 0.0 206.7 1.0 SG C:CYS54 1.2 142.4 1.0 S4 C:SF4501 2.3 206.7 1.0 S2 C:SF4501 2.3 206.7 1.0 S1 C:SF4501 2.3 206.7 1.0 FE1 C:SF4501 2.7 206.7 1.0 FE4 C:SF4501 2.7 206.7 1.0 FE2 C:SF4501 2.7 206.7 1.0 CB C:CYS54 2.9 142.4 1.0 CA C:CYS54 3.5 142.4 1.0 SG C:CYS29 3.7 155.9 1.0 S3 C:SF4501 3.9 206.7 1.0 N C:CYS54 3.9 142.4 1.0 SG C:CYS115 4.0 155.4 1.0 OD1 D:ASP36 4.1 155.4 1.0 CD1 C:LEU31 4.1 150.1 1.0 N C:CYS115 4.7 155.4 1.0 C C:THR53 4.7 143.0 1.0 CB C:CYS115 4.8 155.4 1.0 CD C:PRO116 4.8 149.9 1.0 C C:CYS54 4.9 142.4 1.0 CG C:LEU31 5.0 150.1 1.0

Iron binding site 8 out of 12 in the Cryoem Structure of Dpor Under Turnover


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryoem Structure of Dpor Under Turnover within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe501 b:206.7 occ:1.00 FE4 C:SF4501 0.0 206.7 1.0 SG C:CYS115 1.4 155.4 1.0 S3 C:SF4501 2.3 206.7 1.0 S1 C:SF4501 2.3 206.7 1.0 S2 C:SF4501 2.3 206.7 1.0 CB C:CYS115 2.7 155.4 1.0 FE3 C:SF4501 2.7 206.7 1.0 FE1 C:SF4501 2.7 206.7 1.0 FE2 C:SF4501 2.7 206.7 1.0 N C:CYS115 3.6 155.4 1.0 SG C:CYS54 3.7 142.4 1.0 CA C:CYS115 3.8 155.4 1.0 S4 C:SF4501 3.9 206.7 1.0 SG C:CYS29 4.0 155.9 1.0 OD1 D:ASP36 4.0 155.4 1.0 CG D:PRO33 4.1 153.4 1.0 N C:GLY148 4.2 157.4 1.0 CB C:CYS29 4.3 155.9 1.0 CD C:PRO116 4.6 149.9 1.0 CB D:PRO33 4.7 153.4 1.0 CA C:GLY148 4.9 157.4 1.0 C C:SER114 4.9 143.0 1.0 C C:CYS115 4.9 155.4 1.0 CG D:ASP36 4.9 155.4 1.0

Iron binding site 9 out of 12 in the Cryoem Structure of Dpor Under Turnover


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Cryoem Structure of Dpor Under Turnover within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe301 b:346.8 occ:1.00 FE1 F:SF4301 0.0 346.8 1.0 S3 F:SF4301 2.3 346.8 1.0 S2 F:SF4301 2.3 346.8 1.0 S4 F:SF4301 2.3 346.8 1.0 FE4 F:SF4301 2.7 346.8 1.0 FE3 F:SF4301 2.7 346.8 1.0 FE2 F:SF4301 2.7 346.8 1.0 CB E:PHE163 3.5 305.1 1.0 S1 F:SF4301 3.9 346.8 1.0 CB E:CYS160 3.9 311.1 1.0 SG E:CYS160 4.0 311.1 1.0 CG E:PHE163 4.0 305.1 1.0 CD2 E:PHE163 4.3 305.1 1.0 N E:GLY127 4.4 271.7 1.0 CA E:GLY127 4.4 271.7 1.0 O E:GLY161 4.6 302.7 1.0 N E:PHE163 4.7 305.1 1.0 SG F:CYS126 4.7 267.1 1.0 O E:CYS160 4.7 311.1 1.0 CA E:PHE163 4.7 305.1 1.0 N F:GLY127 4.8 252.2 1.0 CD1 E:PHE163 4.8 305.1 1.0 O F:GLY125 4.9 279.9 1.0 SG F:CYS160 4.9 268.4 1.0 OE1 E:GLN19 4.9 290.2 1.0 CA F:CYS126 4.9 267.1 1.0 C E:CYS160 5.0 311.1 1.0

Iron binding site 10 out of 12 in the Cryoem Structure of Dpor Under Turnover


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Cryoem Structure of Dpor Under Turnover within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe301 b:346.8 occ:1.00 FE2 F:SF4301 0.0 346.8 1.0 S1 F:SF4301 2.3 346.8 1.0 S4 F:SF4301 2.3 346.8 1.0 S3 F:SF4301 2.3 346.8 1.0 FE1 F:SF4301 2.7 346.8 1.0 FE4 F:SF4301 2.7 346.8 1.0 FE3 F:SF4301 2.7 346.8 1.0 CD2 F:PHE163 3.1 250.6 1.0 CE2 F:PHE163 3.1 250.6 1.0 N F:GLY127 3.9 252.2 1.0 S2 F:SF4301 3.9 346.8 1.0 CG F:PHE163 4.1 250.6 1.0 CZ F:PHE163 4.2 250.6 1.0 CA F:GLY127 4.2 252.2 1.0 SG F:CYS160 4.5 268.4 1.0 N F:PHE163 4.8 250.6 1.0 CB F:PHE163 4.8 250.6 1.0 SG F:CYS126 4.9 267.1 1.0 CD1 F:PHE163 5.0 250.6 1.0 N F:GLY128 5.0 234.7 1.0 CE1 F:PHE163 5.0 250.6 1.0

R.Kashyap, E.Antony. Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor To Be Published.