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Iron in PDB 8vwk: Crystal Structure of A Fatty Acid Decarboxylase From Kocuria Marina in Complex with Myristic Acid

Protein crystallography data

The structure of Crystal Structure of A Fatty Acid Decarboxylase From Kocuria Marina in Complex with Myristic Acid, PDB code: 8vwk was solved by W.C.Generoso, R.Y.Miyamoto, M.T.Murakami, L.M.Zanphorlin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.79 / 2.05
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 88.722, 88.722, 117.975, 90, 90, 120
R / Rfree (%) 20.2 / 22.7

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of A Fatty Acid Decarboxylase From Kocuria Marina in Complex with Myristic Acid (pdb code 8vwk). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of A Fatty Acid Decarboxylase From Kocuria Marina in Complex with Myristic Acid, PDB code: 8vwk:

Iron binding site 1 out of 1 in 8vwk

Go back to Iron Binding Sites List in 8vwk
Iron binding site 1 out of 1 in the Crystal Structure of A Fatty Acid Decarboxylase From Kocuria Marina in Complex with Myristic Acid


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of A Fatty Acid Decarboxylase From Kocuria Marina in Complex with Myristic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe502

b:45.2
occ:1.00
FE A:HEM502 0.0 45.2 1.0
NB A:HEM502 2.0 51.1 1.0
ND A:HEM502 2.0 50.2 1.0
NA A:HEM502 2.1 47.9 1.0
NC A:HEM502 2.1 49.3 1.0
SG A:CYS376 2.4 46.5 1.0
C4B A:HEM502 3.0 48.2 1.0
C1C A:HEM502 3.0 48.5 1.0
C1A A:HEM502 3.1 51.2 1.0
C4D A:HEM502 3.1 50.6 1.0
C1B A:HEM502 3.1 49.1 1.0
C4C A:HEM502 3.1 49.7 1.0
C4A A:HEM502 3.1 48.7 1.0
C1D A:HEM502 3.1 50.7 1.0
CB A:CYS376 3.2 51.6 1.0
CHC A:HEM502 3.4 47.6 1.0
CHA A:HEM502 3.4 51.1 1.0
CHB A:HEM502 3.4 48.7 1.0
CHD A:HEM502 3.5 48.6 1.0
O A:HOH614 3.9 52.1 1.0
CA A:CYS376 4.1 52.4 1.0
OE1 A:GLN365 4.2 50.0 1.0
C2C A:HEM502 4.2 47.0 1.0
C3B A:HEM502 4.2 50.0 1.0
C3C A:HEM502 4.3 47.1 1.0
C2B A:HEM502 4.3 49.0 1.0
C2A A:HEM502 4.3 49.6 1.0
C3A A:HEM502 4.3 48.6 1.0
C3D A:HEM502 4.3 52.7 1.0
C2D A:HEM502 4.3 50.4 1.0
CB A:PRO245 4.6 48.3 1.0
C2 A:MYR501 4.8 50.8 1.0
CB A:GLN365 4.9 49.3 1.0
CD A:PRO377 4.9 52.0 1.0
C A:CYS376 4.9 51.9 1.0

Reference:

W.C.Generoso, A.H.S.Alvarenga, I.T.Simoes, R.Y.Miyamoto, F.Mandelli, C.A.Santos, C.R.Santos, F.M.Colombari, M.A.B.Morais, R.Fernandes, G.F.Persinoti, M.T.Murakami, L.M.Zanphorlin. Coordinated Conformational Changes Play A Pivotal Role in Unsaturated Fatty Acid Decarboxylation Into Renewable Olefin To Be Published.
Page generated: Fri Aug 8 00:11:22 2025

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