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Iron in PDB 9fyh: Dye Type Peroxidase Aa From Streptomyces Lividans By Microcrystal Electron Diffraction (Microed/3D Ed)

Iron Binding Sites:

The binding sites of Iron atom in the Dye Type Peroxidase Aa From Streptomyces Lividans By Microcrystal Electron Diffraction (Microed/3D Ed) (pdb code 9fyh). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Dye Type Peroxidase Aa From Streptomyces Lividans By Microcrystal Electron Diffraction (Microed/3D Ed), PDB code: 9fyh:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 9fyh

Go back to Iron Binding Sites List in 9fyh
Iron binding site 1 out of 2 in the Dye Type Peroxidase Aa From Streptomyces Lividans By Microcrystal Electron Diffraction (Microed/3D Ed)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Dye Type Peroxidase Aa From Streptomyces Lividans By Microcrystal Electron Diffraction (Microed/3D Ed) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:6.8
occ:1.00
FE A:HEM501 0.0 6.8 1.0
NB A:HEM501 2.0 10.0 1.0
ND A:HEM501 2.0 10.2 1.0
NC A:HEM501 2.1 9.3 1.0
NA A:HEM501 2.1 10.7 1.0
NE2 A:HIS326 2.3 10.4 1.0
C1B A:HEM501 3.0 12.2 1.0
C4A A:HEM501 3.1 10.8 1.0
C1D A:HEM501 3.1 10.2 1.0
C4B A:HEM501 3.1 10.2 1.0
C4D A:HEM501 3.1 9.2 1.0
C4C A:HEM501 3.1 9.3 1.0
C1A A:HEM501 3.1 11.0 1.0
C1C A:HEM501 3.1 7.7 1.0
CD2 A:HIS326 3.2 12.0 1.0
HD2 A:HIS326 3.2 14.4 1.0
O A:HOH632 3.3 10.3 1.0
CE1 A:HIS326 3.4 11.2 1.0
CHB A:HEM501 3.4 12.4 1.0
CHD A:HEM501 3.4 11.9 1.0
CHC A:HEM501 3.4 8.6 1.0
CHA A:HEM501 3.4 9.0 1.0
HH11 A:ARG342 3.5 12.6 1.0
HE1 A:HIS326 3.6 13.5 1.0
NH1 A:ARG342 4.0 10.4 1.0
HH12 A:ARG342 4.1 12.6 1.0
C3A A:HEM501 4.3 9.2 1.0
C2B A:HEM501 4.3 10.5 1.0
C2D A:HEM501 4.3 9.3 1.0
C3B A:HEM501 4.3 10.3 1.0
C3D A:HEM501 4.3 10.8 1.0
C2A A:HEM501 4.3 9.9 1.0
C2C A:HEM501 4.3 7.3 1.0
C3C A:HEM501 4.3 8.2 1.0
CG A:HIS326 4.4 11.8 1.0
HE2 A:PHE363 4.4 15.5 1.0
HHB A:HEM501 4.4 14.9 1.0
HHD A:HEM501 4.4 14.3 1.0
HHC A:HEM501 4.4 10.3 1.0
HHA A:HEM501 4.4 10.8 1.0
ND1 A:HIS326 4.4 11.9 1.0
HD3 A:ARG342 4.4 15.1 1.0
HD2 A:ARG342 4.5 15.1 1.0
O A:HOH645 4.5 14.1 1.0
HE1 A:PHE297 4.8 17.5 1.0
CZ A:ARG342 4.8 12.8 1.0
CD A:ARG342 4.9 12.6 1.0
OD1 A:ASP239 4.9 13.5 1.0

Iron binding site 2 out of 2 in 9fyh

Go back to Iron Binding Sites List in 9fyh
Iron binding site 2 out of 2 in the Dye Type Peroxidase Aa From Streptomyces Lividans By Microcrystal Electron Diffraction (Microed/3D Ed)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Dye Type Peroxidase Aa From Streptomyces Lividans By Microcrystal Electron Diffraction (Microed/3D Ed) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe501

b:12.9
occ:1.00
FE B:HEM501 0.0 12.9 1.0
NC B:HEM501 2.0 14.7 1.0
NA B:HEM501 2.0 9.4 1.0
ND B:HEM501 2.0 9.5 1.0
NB B:HEM501 2.1 12.2 1.0
NE2 B:HIS326 2.2 11.7 1.0
C4C B:HEM501 3.0 12.9 1.0
C4A B:HEM501 3.0 10.3 1.0
C1D B:HEM501 3.1 9.1 1.0
C1A B:HEM501 3.1 9.6 1.0
C1C B:HEM501 3.1 11.6 1.0
C1B B:HEM501 3.1 13.2 1.0
C4D B:HEM501 3.1 9.3 1.0
C4B B:HEM501 3.1 12.8 1.0
O B:HOH658 3.2 12.4 1.0
CD2 B:HIS326 3.2 12.3 1.0
CE1 B:HIS326 3.2 13.1 1.0
HD2 B:HIS326 3.3 14.9 1.0
HE1 B:HIS326 3.4 15.7 1.0
CHD B:HEM501 3.4 12.3 1.0
CHB B:HEM501 3.4 12.9 1.0
CHA B:HEM501 3.4 10.1 1.0
CHC B:HEM501 3.4 13.4 1.0
HH11 B:ARG342 3.5 12.8 1.0
NH1 B:ARG342 3.9 10.6 1.0
HH12 B:ARG342 3.9 12.8 1.0
C3A B:HEM501 4.3 11.3 1.0
C3C B:HEM501 4.3 9.3 1.0
C2A B:HEM501 4.3 9.5 1.0
C2C B:HEM501 4.3 9.3 1.0
C2D B:HEM501 4.3 10.5 1.0
C3D B:HEM501 4.3 9.4 1.0
C2B B:HEM501 4.3 12.7 1.0
ND1 B:HIS326 4.3 14.6 1.0
C3B B:HEM501 4.3 12.7 1.0
CG B:HIS326 4.3 15.3 1.0
HHD B:HEM501 4.4 14.8 1.0
HHB B:HEM501 4.4 15.6 1.0
HHA B:HEM501 4.4 12.1 1.0
HHC B:HEM501 4.4 16.1 1.0
HD2 B:ARG342 4.5 13.9 1.0
HD3 B:ARG342 4.6 13.9 1.0
HE2 B:PHE363 4.6 14.8 1.0
HE1 B:PHE297 4.7 16.4 1.0
CZ B:ARG342 4.8 9.8 1.0
OD2 B:ASP239 4.8 18.9 1.0
CD B:ARG342 4.9 11.6 1.0

Reference:

G.Hofer, L.Wang, L.Pacoste, P.Hager, A.Fonjallaz, L.Williams, J.Worrall, R.Steiner, H.Xu, X.Zou. Universal Serial Electron Diffraction For High Quality Protein Structures To Be Published.
Page generated: Fri Aug 8 06:05:22 2025

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