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Iron in PDB 9he0: Crystal Structure of Cyua C289A Mutant From Methanococcus Maripaludis with [4FE-4S] Clusters in Complex with Glycerol

Enzymatic activity of Crystal Structure of Cyua C289A Mutant From Methanococcus Maripaludis with [4FE-4S] Clusters in Complex with Glycerol

All present enzymatic activity of Crystal Structure of Cyua C289A Mutant From Methanococcus Maripaludis with [4FE-4S] Clusters in Complex with Glycerol:
4.4.1.28;

Protein crystallography data

The structure of Crystal Structure of Cyua C289A Mutant From Methanococcus Maripaludis with [4FE-4S] Clusters in Complex with Glycerol, PDB code: 9he0 was solved by S.Gervason, L.Pecqueur, B.Golinelli-Pimpaneau, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.90 / 3.18
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 73.694, 73.694, 251.349, 90, 90, 120
R / Rfree (%) 21 / 23.9

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Cyua C289A Mutant From Methanococcus Maripaludis with [4FE-4S] Clusters in Complex with Glycerol (pdb code 9he0). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Crystal Structure of Cyua C289A Mutant From Methanococcus Maripaludis with [4FE-4S] Clusters in Complex with Glycerol, PDB code: 9he0:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 9he0

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Iron binding site 1 out of 8 in the Crystal Structure of Cyua C289A Mutant From Methanococcus Maripaludis with [4FE-4S] Clusters in Complex with Glycerol


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Cyua C289A Mutant From Methanococcus Maripaludis with [4FE-4S] Clusters in Complex with Glycerol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:61.2
occ:1.00
 FE1 A:SF4401 0.0 61.2 1.0
S3 A:SF4401 2.3 69.5 1.0
S2 A:SF4401 2.3 63.9 1.0
S4 A:SF4401 2.3 64.9 1.0
SG A:CYS329 2.3 55.4 1.0
FE4 A:SF4401 2.7 51.5 1.0
FE3 A:SF4401 2.7 76.7 1.0
FE2 A:SF4401 2.7 72.2 1.0
CB A:CYS329 3.2 68.6 1.0
CA A:CYS329 3.6 64.8 1.0
S1 A:SF4401 3.9 80.2 1.0
SG A:CYS287 4.1 62.6 1.0
C A:CYS329 4.2 66.4 1.0
O1 A:GOL402 4.5 66.8 1.0
N A:GLY331 4.6 67.9 1.0
CA A:CYS287 4.6 72.4 1.0
CB A:CYS287 4.6 73.2 1.0
N A:ASP330 4.6 60.7 1.0
SG A:CYS336 4.7 70.3 1.0
O A:GLY331 4.7 66.7 1.0
O A:CYS329 4.7 72.3 1.0
C A:GLY331 4.8 67.5 1.0
N A:CYS329 4.9 68.4 1.0
CA A:GLY331 5.0 68.0 1.0

Iron binding site 2 out of 8 in 9he0

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Iron binding site 2 out of 8 in the Crystal Structure of Cyua C289A Mutant From Methanococcus Maripaludis with [4FE-4S] Clusters in Complex with Glycerol


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Cyua C289A Mutant From Methanococcus Maripaludis with [4FE-4S] Clusters in Complex with Glycerol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:72.2
occ:1.00
 FE2 A:SF4401 0.0 72.2 1.0
O1 A:GOL402 2.2 66.8 1.0
S4 A:SF4401 2.3 64.9 1.0
S1 A:SF4401 2.3 80.2 1.0
S3 A:SF4401 2.3 69.5 1.0
FE3 A:SF4401 2.7 76.7 1.0
FE1 A:SF4401 2.7 61.2 1.0
FE4 A:SF4401 2.7 51.5 1.0
C1 A:GOL402 3.3 58.2 1.0
C2 A:GOL402 3.8 57.6 1.0
S2 A:SF4401 3.9 63.9 1.0
CB A:ALA289 3.9 67.7 1.0
O2 A:GOL402 4.3 52.2 1.0
ND2 A:ASN239 4.3 57.1 1.0
CB A:ASN239 4.4 56.0 1.0
SG A:CYS329 4.5 55.4 1.0
SG A:CYS336 4.8 70.3 1.0
CG A:ASN239 4.8 57.3 1.0
SG A:CYS287 4.9 62.6 1.0

Iron binding site 3 out of 8 in 9he0

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Iron binding site 3 out of 8 in the Crystal Structure of Cyua C289A Mutant From Methanococcus Maripaludis with [4FE-4S] Clusters in Complex with Glycerol


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Cyua C289A Mutant From Methanococcus Maripaludis with [4FE-4S] Clusters in Complex with Glycerol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:76.7
occ:1.00
 FE3 A:SF4401 0.0 76.7 1.0
S1 A:SF4401 2.3 80.2 1.0
S2 A:SF4401 2.3 63.9 1.0
S4 A:SF4401 2.3 64.9 1.0
SG A:CYS287 2.3 62.6 1.0
FE1 A:SF4401 2.7 61.2 1.0
FE4 A:SF4401 2.7 51.5 1.0
FE2 A:SF4401 2.7 72.2 1.0
CB A:ALA289 3.5 67.7 1.0
CB A:CYS287 3.8 73.2 1.0
S3 A:SF4401 3.9 69.5 1.0
CA A:CYS287 4.3 72.4 1.0
N A:ALA289 4.3 70.9 1.0
N A:VAL290 4.4 69.3 1.0
O1 A:GOL402 4.4 66.8 1.0
CA A:ALA289 4.4 68.7 1.0
C A:CYS287 4.6 75.9 1.0
SG A:CYS329 4.7 55.4 1.0
CG2 A:VAL290 4.8 74.6 1.0
SG A:CYS336 4.9 70.3 1.0
CD1 A:LEU340 4.9 48.2 1.0
C A:ALA289 4.9 64.8 1.0

Iron binding site 4 out of 8 in 9he0

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Iron binding site 4 out of 8 in the Crystal Structure of Cyua C289A Mutant From Methanococcus Maripaludis with [4FE-4S] Clusters in Complex with Glycerol


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Cyua C289A Mutant From Methanococcus Maripaludis with [4FE-4S] Clusters in Complex with Glycerol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:51.5
occ:1.00
 FE4 A:SF4401 0.0 51.5 1.0
S2 A:SF4401 2.3 63.9 1.0
S3 A:SF4401 2.3 69.5 1.0
S1 A:SF4401 2.3 80.2 1.0
SG A:CYS336 2.3 70.3 1.0
FE1 A:SF4401 2.7 61.2 1.0
FE3 A:SF4401 2.7 76.7 1.0
FE2 A:SF4401 2.7 72.2 1.0
CB A:CYS336 3.2 48.6 1.0
S4 A:SF4401 3.9 64.9 1.0
O A:GLY331 4.0 66.7 1.0
CA A:CYS336 4.2 55.8 1.0
ND2 A:ASN239 4.3 57.1 1.0
C A:GLY331 4.6 67.5 1.0
SG A:CYS287 4.7 62.6 1.0
CA A:GLY332 4.8 72.3 1.0
SG A:CYS329 4.9 55.4 1.0
O1 A:GOL402 4.9 66.8 1.0
N A:GLY332 5.0 74.7 1.0

Iron binding site 5 out of 8 in 9he0

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Iron binding site 5 out of 8 in the Crystal Structure of Cyua C289A Mutant From Methanococcus Maripaludis with [4FE-4S] Clusters in Complex with Glycerol


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Crystal Structure of Cyua C289A Mutant From Methanococcus Maripaludis with [4FE-4S] Clusters in Complex with Glycerol within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe401

b:77.2
occ:1.00
 FE1 B:SF4401 0.0 77.2 1.0
S4 B:SF4401 2.3 50.5 1.0
S2 B:SF4401 2.3 69.8 1.0
S3 B:SF4401 2.3 67.3 1.0
SG B:CYS329 2.3 73.1 1.0
FE3 B:SF4401 2.7 62.0 1.0
FE2 B:SF4401 2.7 86.7 1.0
FE4 B:SF4401 2.7 61.8 1.0
CB B:CYS329 3.4 73.4 1.0
CA B:CYS329 3.8 73.0 1.0
S1 B:SF4401 3.9 71.7 1.0
N B:GLY331 4.2 67.3 1.0
C B:CYS329 4.3 65.2 1.0
O B:GLY331 4.3 70.8 1.0
C B:GLY331 4.3 70.8 1.0
O1 B:GOL402 4.3 78.5 1.0
CA B:GLY331 4.5 67.8 1.0
SG B:CYS336 4.5 67.3 1.0
SG B:CYS287 4.6 73.4 1.0
N B:ASP330 4.7 71.2 1.0
O B:CYS329 4.7 54.1 1.0
N B:GLY332 4.7 74.5 1.0

Iron binding site 6 out of 8 in 9he0

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Iron binding site 6 out of 8 in the Crystal Structure of Cyua C289A Mutant From Methanococcus Maripaludis with [4FE-4S] Clusters in Complex with Glycerol


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Crystal Structure of Cyua C289A Mutant From Methanococcus Maripaludis with [4FE-4S] Clusters in Complex with Glycerol within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe401

b:86.7
occ:1.00
 FE2 B:SF4401 0.0 86.7 1.0
O1 B:GOL402 2.2 78.5 1.0
S4 B:SF4401 2.3 50.5 1.0
S3 B:SF4401 2.3 67.3 1.0
S1 B:SF4401 2.3 71.7 1.0
FE1 B:SF4401 2.7 77.2 1.0
FE3 B:SF4401 2.7 62.0 1.0
FE4 B:SF4401 2.7 61.8 1.0
C1 B:GOL402 3.5 69.4 1.0
CB B:ALA289 3.7 68.4 1.0
S2 B:SF4401 3.9 69.8 1.0
CB B:ASN239 4.3 68.7 1.0
ND2 B:ASN239 4.3 71.2 1.0
C2 B:GOL402 4.5 65.9 1.0
SG B:CYS329 4.6 73.1 1.0
SG B:CYS287 4.7 73.4 1.0
CG B:ASN239 4.8 66.3 1.0
SG B:CYS336 4.9 67.3 1.0
O2 B:GOL402 4.9 71.0 1.0
CA B:ALA289 4.9 67.5 1.0
N B:ALA289 4.9 68.7 1.0
OG B:SER237 5.0 58.6 1.0

Iron binding site 7 out of 8 in 9he0

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Iron binding site 7 out of 8 in the Crystal Structure of Cyua C289A Mutant From Methanococcus Maripaludis with [4FE-4S] Clusters in Complex with Glycerol


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Crystal Structure of Cyua C289A Mutant From Methanococcus Maripaludis with [4FE-4S] Clusters in Complex with Glycerol within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe401

b:62.0
occ:1.00
 FE3 B:SF4401 0.0 62.0 1.0
SG B:CYS287 2.3 73.4 1.0
S2 B:SF4401 2.3 69.8 1.0
S1 B:SF4401 2.3 71.7 1.0
S4 B:SF4401 2.3 50.5 1.0
FE1 B:SF4401 2.7 77.2 1.0
FE4 B:SF4401 2.7 61.8 1.0
FE2 B:SF4401 2.7 86.7 1.0
CB B:CYS287 3.6 65.7 1.0
S3 B:SF4401 3.9 67.3 1.0
CB B:ALA289 4.0 68.4 1.0
CA B:CYS287 4.1 68.9 1.0
SG B:CYS329 4.3 73.1 1.0
CB B:CYS329 4.5 73.4 1.0
CD B:LYS339 4.5 52.9 1.0
C B:CYS287 4.7 66.0 1.0
CA B:CYS329 4.7 73.0 1.0
N B:ALA289 4.7 68.7 1.0
N B:VAL290 4.8 63.8 1.0
SG B:CYS336 4.8 67.3 1.0
CA B:ALA289 4.9 67.5 1.0
O1 B:GOL402 4.9 78.5 1.0
O B:ILE328 5.0 71.5 1.0
CG2 B:VAL290 5.0 55.8 1.0

Iron binding site 8 out of 8 in 9he0

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Iron binding site 8 out of 8 in the Crystal Structure of Cyua C289A Mutant From Methanococcus Maripaludis with [4FE-4S] Clusters in Complex with Glycerol


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Crystal Structure of Cyua C289A Mutant From Methanococcus Maripaludis with [4FE-4S] Clusters in Complex with Glycerol within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe401

b:61.8
occ:1.00
 FE4 B:SF4401 0.0 61.8 1.0
S1 B:SF4401 2.3 71.7 1.0
SG B:CYS336 2.3 67.3 1.0
S3 B:SF4401 2.3 67.3 1.0
S2 B:SF4401 2.3 69.8 1.0
FE3 B:SF4401 2.7 62.0 1.0
FE1 B:SF4401 2.7 77.2 1.0
FE2 B:SF4401 2.7 86.7 1.0
CB B:CYS336 3.1 53.2 1.0
S4 B:SF4401 3.9 50.5 1.0
O B:GLY331 4.0 70.8 1.0
CA B:CYS336 4.1 58.1 1.0
ND2 B:ASN239 4.1 71.2 1.0
O1 B:GOL402 4.5 78.5 1.0
C B:GLY331 4.5 70.8 1.0
CA B:GLY332 4.6 70.9 1.0
N B:GLY332 4.8 74.5 1.0
SG B:CYS287 4.9 73.4 1.0

Reference:

B.Golinelli-Pimpaneau, S.Gervason, L.Pecqueur, B.Golinelli-Pimpaneau. N/A N/A.
Page generated: Sat Dec 13 16:38:15 2025

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