Iron in PDB 9hzl: High Resolution Cryo-Em Structure of Human Complex III in Mitochondria
Enzymatic activity of High Resolution Cryo-Em Structure of Human Complex III in Mitochondria
All present enzymatic activity of High Resolution Cryo-Em Structure of Human Complex III in Mitochondria:
7.1.1.8;
Iron Binding Sites:
The binding sites of Iron atom in the High Resolution Cryo-Em Structure of Human Complex III in Mitochondria
(pdb code 9hzl). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 10 binding sites of Iron where determined in the
High Resolution Cryo-Em Structure of Human Complex III in Mitochondria, PDB code: 9hzl:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 10 in 9hzl
Go back to
Iron Binding Sites List in 9hzl
Iron binding site 1 out
of 10 in the High Resolution Cryo-Em Structure of Human Complex III in Mitochondria
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of High Resolution Cryo-Em Structure of Human Complex III in Mitochondria within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe302
b:317.0
occ:1.00
|
FE1
|
C:FES302
|
0.0
|
317.0
|
1.0
|
|
S1
|
C:FES302
|
2.2
|
263.7
|
1.0
|
|
S2
|
C:FES302
|
2.2
|
280.0
|
1.0
|
|
SG
|
C:CYS217
|
2.3
|
240.2
|
1.0
|
|
HB3
|
C:HIS219
|
2.3
|
236.8
|
1.0
|
|
HG
|
C:CYS236
|
2.4
|
241.1
|
1.0
|
|
HH
|
C:TYR243
|
2.7
|
219.5
|
1.0
|
|
FE2
|
C:FES302
|
2.7
|
302.8
|
1.0
|
|
HD1
|
C:HIS219
|
2.9
|
244.8
|
1.0
|
|
CB
|
C:HIS219
|
3.2
|
237.5
|
1.0
|
|
OH
|
C:TYR243
|
3.4
|
217.6
|
1.0
|
|
ND1
|
C:HIS219
|
3.4
|
247.5
|
1.0
|
|
HB2
|
C:HIS219
|
3.5
|
236.0
|
1.0
|
|
SG
|
C:CYS236
|
3.6
|
245.4
|
1.0
|
|
HD1
|
C:HIS239
|
3.6
|
239.2
|
1.0
|
|
HG
|
C:SER241
|
3.6
|
227.2
|
1.0
|
|
CG
|
C:HIS219
|
3.6
|
241.8
|
1.0
|
|
H
|
C:LEU220
|
3.7
|
233.7
|
1.0
|
|
HB2
|
C:SER241
|
3.8
|
227.0
|
1.0
|
|
H
|
C:HIS219
|
3.8
|
227.4
|
1.0
|
|
CB
|
C:CYS217
|
3.8
|
230.9
|
1.0
|
|
HB3
|
C:CYS217
|
3.9
|
229.3
|
1.0
|
|
HE2
|
C:TYR243
|
4.0
|
213.4
|
1.0
|
|
HB2
|
C:CYS217
|
4.0
|
228.7
|
1.0
|
|
HB2
|
C:CYS222
|
4.0
|
237.8
|
1.0
|
|
OG
|
C:SER241
|
4.3
|
226.3
|
1.0
|
|
CA
|
C:HIS219
|
4.3
|
232.6
|
1.0
|
|
N
|
C:LEU220
|
4.3
|
238.0
|
1.0
|
|
ND1
|
C:HIS239
|
4.4
|
244.6
|
1.0
|
|
HB3
|
C:CYS236
|
4.4
|
231.6
|
1.0
|
|
HB2
|
C:HIS239
|
4.4
|
234.8
|
1.0
|
|
HB2
|
C:ALA254
|
4.4
|
216.5
|
1.0
|
|
HB2
|
C:CYS236
|
4.4
|
230.4
|
1.0
|
|
N
|
C:HIS219
|
4.4
|
227.3
|
1.0
|
|
HB2
|
C:CYS238
|
4.4
|
236.1
|
1.0
|
|
CB
|
C:SER241
|
4.4
|
225.0
|
1.0
|
|
CB
|
C:CYS236
|
4.4
|
231.2
|
1.0
|
|
HB2
|
C:LEU220
|
4.4
|
232.9
|
1.0
|
|
CZ
|
C:TYR243
|
4.5
|
210.9
|
1.0
|
|
CE1
|
C:HIS219
|
4.6
|
243.0
|
1.0
|
|
CE2
|
C:TYR243
|
4.6
|
208.7
|
1.0
|
|
H
|
C:CYS222
|
4.7
|
234.2
|
1.0
|
|
HB3
|
C:SER241
|
4.7
|
224.6
|
1.0
|
|
C
|
C:HIS219
|
4.8
|
236.7
|
1.0
|
|
CD2
|
C:HIS219
|
4.9
|
237.6
|
1.0
|
|
HG2
|
C:PRO253
|
4.9
|
224.9
|
1.0
|
|
CB
|
C:CYS222
|
5.0
|
240.9
|
1.0
|
|
HD2
|
C:PRO253
|
5.0
|
221.4
|
1.0
|
|
HE1
|
C:HIS219
|
5.0
|
242.7
|
1.0
|
|
Iron binding site 2 out
of 10 in 9hzl
Go back to
Iron Binding Sites List in 9hzl
Iron binding site 2 out
of 10 in the High Resolution Cryo-Em Structure of Human Complex III in Mitochondria
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of High Resolution Cryo-Em Structure of Human Complex III in Mitochondria within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe302
b:302.8
occ:1.00
|
FE2
|
C:FES302
|
0.0
|
302.8
|
1.0
|
|
HD1
|
C:HIS239
|
1.7
|
239.2
|
1.0
|
|
HD1
|
C:HIS219
|
1.9
|
244.8
|
1.0
|
|
ND1
|
C:HIS219
|
2.1
|
247.5
|
1.0
|
|
ND1
|
C:HIS239
|
2.1
|
244.6
|
1.0
|
|
S2
|
C:FES302
|
2.2
|
280.0
|
1.0
|
|
S1
|
C:FES302
|
2.2
|
263.7
|
1.0
|
|
CE1
|
C:HIS219
|
2.6
|
243.0
|
1.0
|
|
FE1
|
C:FES302
|
2.7
|
317.0
|
1.0
|
|
HE1
|
C:HIS219
|
2.7
|
242.7
|
1.0
|
|
CE1
|
C:HIS239
|
2.8
|
237.8
|
1.0
|
|
HB2
|
C:HIS239
|
3.0
|
234.8
|
1.0
|
|
CG
|
C:HIS239
|
3.0
|
237.3
|
1.0
|
|
CG
|
C:HIS219
|
3.0
|
241.8
|
1.0
|
|
HE1
|
C:HIS239
|
3.0
|
234.9
|
1.0
|
|
HB3
|
C:HIS219
|
3.4
|
236.8
|
1.0
|
|
NE2
|
C:HIS219
|
3.5
|
239.0
|
1.0
|
|
CB
|
C:HIS239
|
3.5
|
236.4
|
1.0
|
|
HG2
|
C:PRO253
|
3.6
|
224.9
|
1.0
|
|
HG
|
C:SER241
|
3.7
|
227.2
|
1.0
|
|
CD2
|
C:HIS219
|
3.8
|
237.6
|
1.0
|
|
CB
|
C:HIS219
|
3.8
|
237.5
|
1.0
|
|
NE2
|
C:HIS239
|
3.8
|
226.5
|
1.0
|
|
CD2
|
C:HIS239
|
3.9
|
222.3
|
1.0
|
|
HG
|
C:CYS236
|
4.0
|
241.1
|
1.0
|
|
HB3
|
C:HIS239
|
4.0
|
233.2
|
1.0
|
|
HG
|
C:LEU220
|
4.1
|
233.3
|
1.0
|
|
HD2
|
C:PRO253
|
4.1
|
221.4
|
1.0
|
|
HD12
|
C:LEU220
|
4.2
|
232.1
|
1.0
|
|
HB2
|
C:HIS219
|
4.2
|
236.0
|
1.0
|
|
HB2
|
C:CYS238
|
4.2
|
236.1
|
1.0
|
|
HG3
|
C:PRO253
|
4.3
|
224.2
|
1.0
|
|
CG
|
C:PRO253
|
4.3
|
222.9
|
1.0
|
|
HB2
|
C:LEU220
|
4.3
|
232.9
|
1.0
|
|
OG
|
C:SER241
|
4.3
|
226.3
|
1.0
|
|
HD2
|
C:HIS219
|
4.6
|
238.7
|
1.0
|
|
H
|
C:HIS239
|
4.6
|
233.1
|
1.0
|
|
HB3
|
C:CYS238
|
4.6
|
235.7
|
1.0
|
|
N
|
C:HIS239
|
4.7
|
233.9
|
1.0
|
|
CD
|
C:PRO253
|
4.7
|
221.1
|
1.0
|
|
H
|
C:LEU220
|
4.7
|
233.7
|
1.0
|
|
HD2
|
C:HIS239
|
4.7
|
227.6
|
1.0
|
|
CA
|
C:HIS239
|
4.7
|
231.8
|
1.0
|
|
HD11
|
C:LEU220
|
4.7
|
232.4
|
1.0
|
|
CD1
|
C:LEU220
|
4.7
|
232.3
|
1.0
|
|
CG
|
C:LEU220
|
4.8
|
232.1
|
1.0
|
|
SG
|
C:CYS217
|
4.9
|
240.2
|
1.0
|
|
HB2
|
C:SER241
|
4.9
|
227.0
|
1.0
|
|
CB
|
C:CYS238
|
4.9
|
237.8
|
1.0
|
|
SG
|
C:CYS236
|
5.0
|
245.4
|
1.0
|
|
N
|
C:LEU220
|
5.0
|
238.0
|
1.0
|
|
HH
|
C:TYR243
|
5.0
|
219.5
|
1.0
|
|
CB
|
C:LEU220
|
5.0
|
233.0
|
1.0
|
|
Iron binding site 3 out
of 10 in 9hzl
Go back to
Iron Binding Sites List in 9hzl
Iron binding site 3 out
of 10 in the High Resolution Cryo-Em Structure of Human Complex III in Mitochondria
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of High Resolution Cryo-Em Structure of Human Complex III in Mitochondria within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe401
b:70.5
occ:1.00
|
FE
|
H:HEC401
|
0.0
|
70.5
|
1.0
|
|
NE2
|
H:HIS125
|
1.7
|
56.7
|
1.0
|
|
NA
|
H:HEC401
|
2.0
|
50.8
|
1.0
|
|
NB
|
H:HEC401
|
2.1
|
48.0
|
1.0
|
|
NC
|
H:HEC401
|
2.1
|
57.0
|
1.0
|
|
ND
|
H:HEC401
|
2.1
|
50.1
|
1.0
|
|
CE1
|
H:HIS125
|
2.3
|
49.9
|
1.0
|
|
HE1
|
H:HIS125
|
2.4
|
52.3
|
1.0
|
|
SD
|
H:MET244
|
2.9
|
54.8
|
1.0
|
|
CD2
|
H:HIS125
|
2.9
|
56.6
|
1.0
|
|
C4C
|
H:HEC401
|
3.0
|
57.7
|
1.0
|
|
C1A
|
H:HEC401
|
3.1
|
42.0
|
1.0
|
|
C4A
|
H:HEC401
|
3.1
|
42.5
|
1.0
|
|
C1C
|
H:HEC401
|
3.1
|
54.2
|
1.0
|
|
C1B
|
H:HEC401
|
3.1
|
44.2
|
1.0
|
|
C1D
|
H:HEC401
|
3.1
|
52.6
|
1.0
|
|
C4D
|
H:HEC401
|
3.1
|
46.6
|
1.0
|
|
C4B
|
H:HEC401
|
3.1
|
49.3
|
1.0
|
|
HD2
|
H:HIS125
|
3.3
|
57.3
|
1.0
|
|
CHD
|
H:HEC401
|
3.4
|
55.6
|
1.0
|
|
CHB
|
H:HEC401
|
3.4
|
42.7
|
1.0
|
|
CHA
|
H:HEC401
|
3.4
|
40.9
|
1.0
|
|
CHC
|
H:HEC401
|
3.5
|
53.4
|
1.0
|
|
ND1
|
H:HIS125
|
3.5
|
48.1
|
1.0
|
|
HE1
|
H:MET244
|
3.5
|
49.9
|
1.0
|
|
CE
|
H:MET244
|
3.7
|
49.2
|
1.0
|
|
HE2
|
H:MET244
|
3.7
|
54.1
|
1.0
|
|
CG
|
H:HIS125
|
3.8
|
52.4
|
1.0
|
|
HB2
|
H:MET244
|
4.0
|
62.1
|
1.0
|
|
HB3
|
H:PRO194
|
4.2
|
51.7
|
1.0
|
|
HD1
|
H:HIS125
|
4.2
|
49.8
|
1.0
|
|
C3C
|
H:HEC401
|
4.2
|
62.4
|
1.0
|
|
C2C
|
H:HEC401
|
4.2
|
64.7
|
1.0
|
|
C2A
|
H:HEC401
|
4.3
|
38.8
|
1.0
|
|
CG
|
H:MET244
|
4.3
|
63.4
|
1.0
|
|
C3A
|
H:HEC401
|
4.3
|
38.0
|
1.0
|
|
C2B
|
H:HEC401
|
4.3
|
47.6
|
1.0
|
|
HHD
|
H:HEC401
|
4.3
|
57.6
|
1.0
|
|
C3B
|
H:HEC401
|
4.3
|
52.8
|
1.0
|
|
C3D
|
H:HEC401
|
4.3
|
50.0
|
1.0
|
|
C2D
|
H:HEC401
|
4.3
|
53.6
|
1.0
|
|
HHB
|
H:HEC401
|
4.4
|
44.5
|
1.0
|
|
HHA
|
H:HEC401
|
4.4
|
45.3
|
1.0
|
|
HHC
|
H:HEC401
|
4.4
|
56.0
|
1.0
|
|
HG3
|
H:MET244
|
4.5
|
62.3
|
1.0
|
|
HE3
|
H:MET244
|
4.6
|
55.5
|
1.0
|
|
CB
|
H:MET244
|
4.6
|
60.8
|
1.0
|
|
HB2
|
H:PRO194
|
4.7
|
51.4
|
1.0
|
|
HD11
|
H:LEU197
|
4.8
|
48.7
|
1.0
|
|
CB
|
H:PRO194
|
4.9
|
49.1
|
1.0
|
|
HB3
|
H:MET244
|
4.9
|
62.0
|
1.0
|
|
HA
|
H:PRO194
|
5.0
|
53.0
|
1.0
|
|
Iron binding site 4 out
of 10 in 9hzl
Go back to
Iron Binding Sites List in 9hzl
Iron binding site 4 out
of 10 in the High Resolution Cryo-Em Structure of Human Complex III in Mitochondria
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of High Resolution Cryo-Em Structure of Human Complex III in Mitochondria within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Fe401
b:47.9
occ:1.00
|
FE
|
J:HEM401
|
0.0
|
47.9
|
1.0
|
|
NE2
|
J:HIS83
|
1.8
|
37.9
|
1.0
|
|
NC
|
J:HEM401
|
2.0
|
33.9
|
1.0
|
|
NB
|
J:HEM401
|
2.0
|
34.2
|
1.0
|
|
ND
|
J:HEM401
|
2.1
|
31.4
|
1.0
|
|
NA
|
J:HEM401
|
2.1
|
34.0
|
1.0
|
|
HE1
|
J:HIS83
|
2.1
|
32.9
|
1.0
|
|
CE1
|
J:HIS83
|
2.2
|
29.6
|
1.0
|
|
NE2
|
J:HIS182
|
2.5
|
36.3
|
1.0
|
|
C4B
|
J:HEM401
|
3.1
|
29.1
|
1.0
|
|
C1C
|
J:HEM401
|
3.1
|
31.8
|
1.0
|
|
C1D
|
J:HEM401
|
3.1
|
32.6
|
1.0
|
|
C4D
|
J:HEM401
|
3.1
|
33.0
|
1.0
|
|
C4C
|
J:HEM401
|
3.1
|
31.4
|
1.0
|
|
C1B
|
J:HEM401
|
3.1
|
29.3
|
1.0
|
|
C4A
|
J:HEM401
|
3.1
|
32.5
|
1.0
|
|
C1A
|
J:HEM401
|
3.1
|
33.7
|
1.0
|
|
CD2
|
J:HIS83
|
3.1
|
35.1
|
1.0
|
|
CE1
|
J:HIS182
|
3.3
|
36.0
|
1.0
|
|
HE1
|
J:HIS182
|
3.3
|
38.4
|
1.0
|
|
CHC
|
J:HEM401
|
3.4
|
32.5
|
1.0
|
|
CHD
|
J:HEM401
|
3.4
|
29.4
|
1.0
|
|
CHA
|
J:HEM401
|
3.4
|
36.2
|
1.0
|
|
CHB
|
J:HEM401
|
3.4
|
29.5
|
1.0
|
|
ND1
|
J:HIS83
|
3.5
|
28.2
|
1.0
|
|
CD2
|
J:HIS182
|
3.6
|
36.5
|
1.0
|
|
HD2
|
J:HIS83
|
3.6
|
35.6
|
1.0
|
|
HD2
|
J:HIS182
|
3.8
|
37.5
|
1.0
|
|
CG
|
J:HIS83
|
3.9
|
37.1
|
1.0
|
|
HE21
|
J:GLN44
|
4.0
|
44.1
|
1.0
|
|
HE22
|
J:GLN44
|
4.0
|
42.7
|
1.0
|
|
HD1
|
J:HIS83
|
4.2
|
33.6
|
1.0
|
|
C2D
|
J:HEM401
|
4.3
|
34.6
|
1.0
|
|
C3D
|
J:HEM401
|
4.3
|
32.6
|
1.0
|
|
C2C
|
J:HEM401
|
4.3
|
28.5
|
1.0
|
|
C3B
|
J:HEM401
|
4.3
|
31.0
|
1.0
|
|
C3C
|
J:HEM401
|
4.3
|
27.9
|
1.0
|
|
C2B
|
J:HEM401
|
4.3
|
27.8
|
1.0
|
|
C3A
|
J:HEM401
|
4.3
|
33.0
|
1.0
|
|
C2A
|
J:HEM401
|
4.3
|
35.6
|
1.0
|
|
HA3
|
J:GLY48
|
4.3
|
37.0
|
1.0
|
|
HHC
|
J:HEM401
|
4.4
|
33.8
|
1.0
|
|
NE2
|
J:GLN44
|
4.4
|
41.2
|
1.0
|
|
HHD
|
J:HEM401
|
4.4
|
31.8
|
1.0
|
|
HHA
|
J:HEM401
|
4.4
|
38.1
|
1.0
|
|
HHB
|
J:HEM401
|
4.4
|
32.8
|
1.0
|
|
ND1
|
J:HIS182
|
4.5
|
37.5
|
1.0
|
|
HA3
|
J:GLY130
|
4.6
|
42.3
|
1.0
|
|
CG
|
J:HIS182
|
4.6
|
38.2
|
1.0
|
|
HD12
|
J:LEU133
|
4.7
|
43.3
|
1.0
|
|
HA2
|
J:GLY48
|
4.8
|
36.4
|
1.0
|
|
Iron binding site 5 out
of 10 in 9hzl
Go back to
Iron Binding Sites List in 9hzl
Iron binding site 5 out
of 10 in the High Resolution Cryo-Em Structure of Human Complex III in Mitochondria
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of High Resolution Cryo-Em Structure of Human Complex III in Mitochondria within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Fe402
b:52.8
occ:1.00
|
FE
|
J:HEM402
|
0.0
|
52.8
|
1.0
|
|
NB
|
J:HEM402
|
2.0
|
37.1
|
1.0
|
|
NA
|
J:HEM402
|
2.0
|
38.8
|
1.0
|
|
ND
|
J:HEM402
|
2.0
|
35.2
|
1.0
|
|
NC
|
J:HEM402
|
2.0
|
39.4
|
1.0
|
|
NE2
|
J:HIS97
|
2.1
|
39.1
|
1.0
|
|
HE1
|
J:HIS196
|
2.9
|
49.2
|
1.0
|
|
CE1
|
J:HIS196
|
3.0
|
48.2
|
1.0
|
|
CD2
|
J:HIS97
|
3.0
|
39.7
|
1.0
|
|
C1C
|
J:HEM402
|
3.0
|
37.8
|
1.0
|
|
C4A
|
J:HEM402
|
3.0
|
34.8
|
1.0
|
|
C1B
|
J:HEM402
|
3.0
|
40.5
|
1.0
|
|
C1D
|
J:HEM402
|
3.1
|
33.2
|
1.0
|
|
C4D
|
J:HEM402
|
3.1
|
29.8
|
1.0
|
|
C1A
|
J:HEM402
|
3.1
|
37.1
|
1.0
|
|
C4C
|
J:HEM402
|
3.1
|
33.6
|
1.0
|
|
C4B
|
J:HEM402
|
3.1
|
32.5
|
1.0
|
|
HD2
|
J:HIS97
|
3.1
|
40.3
|
1.0
|
|
CE1
|
J:HIS97
|
3.2
|
32.8
|
1.0
|
|
NE2
|
J:HIS196
|
3.3
|
49.2
|
1.0
|
|
CHB
|
J:HEM402
|
3.4
|
36.3
|
1.0
|
|
CHD
|
J:HEM402
|
3.4
|
30.1
|
1.0
|
|
CHC
|
J:HEM402
|
3.4
|
35.8
|
1.0
|
|
CHA
|
J:HEM402
|
3.4
|
35.1
|
1.0
|
|
HE1
|
J:HIS97
|
3.4
|
34.9
|
1.0
|
|
ND1
|
J:HIS196
|
3.6
|
46.8
|
1.0
|
|
HD1
|
J:HIS196
|
3.9
|
47.7
|
1.0
|
|
CD2
|
J:HIS196
|
4.0
|
50.1
|
1.0
|
|
CG
|
J:HIS196
|
4.2
|
49.9
|
1.0
|
|
CG
|
J:HIS97
|
4.2
|
41.6
|
1.0
|
|
C2C
|
J:HEM402
|
4.3
|
37.5
|
1.0
|
|
ND1
|
J:HIS97
|
4.3
|
39.9
|
1.0
|
|
C2D
|
J:HEM402
|
4.3
|
31.8
|
1.0
|
|
C3A
|
J:HEM402
|
4.3
|
36.5
|
1.0
|
|
C3D
|
J:HEM402
|
4.3
|
32.4
|
1.0
|
|
C2A
|
J:HEM402
|
4.3
|
39.3
|
1.0
|
|
C3C
|
J:HEM402
|
4.3
|
32.0
|
1.0
|
|
C2B
|
J:HEM402
|
4.3
|
38.2
|
1.0
|
|
C3B
|
J:HEM402
|
4.3
|
35.4
|
1.0
|
|
HHB
|
J:HEM402
|
4.3
|
38.4
|
1.0
|
|
HHD
|
J:HEM402
|
4.4
|
35.2
|
1.0
|
|
HHC
|
J:HEM402
|
4.4
|
38.7
|
1.0
|
|
HHA
|
J:HEM402
|
4.4
|
38.9
|
1.0
|
|
HD2
|
J:HIS196
|
4.6
|
49.7
|
1.0
|
|
Iron binding site 6 out
of 10 in 9hzl
Go back to
Iron Binding Sites List in 9hzl
Iron binding site 6 out
of 10 in the High Resolution Cryo-Em Structure of Human Complex III in Mitochondria
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of High Resolution Cryo-Em Structure of Human Complex III in Mitochondria within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Fe301
b:306.5
occ:1.00
|
FE1
|
P:FES301
|
0.0
|
306.5
|
1.0
|
|
S1
|
P:FES301
|
2.2
|
268.5
|
1.0
|
|
S2
|
P:FES301
|
2.2
|
280.3
|
1.0
|
|
HG
|
P:SER241
|
2.4
|
225.5
|
1.0
|
|
ND1
|
P:HIS219
|
2.4
|
248.1
|
1.0
|
|
FE2
|
P:FES301
|
2.7
|
319.5
|
1.0
|
|
OG
|
P:SER241
|
2.7
|
225.4
|
1.0
|
|
HB3
|
P:HIS219
|
2.8
|
223.0
|
1.0
|
|
HB2
|
P:HIS219
|
3.1
|
223.0
|
1.0
|
|
CG
|
P:HIS219
|
3.1
|
232.8
|
1.0
|
|
CB
|
P:HIS219
|
3.2
|
225.6
|
1.0
|
|
HG
|
P:CYS236
|
3.3
|
218.9
|
1.0
|
|
HB2
|
P:HIS239
|
3.3
|
253.4
|
1.0
|
|
CE1
|
P:HIS219
|
3.5
|
247.9
|
1.0
|
|
HB2
|
P:SER241
|
3.6
|
220.4
|
1.0
|
|
CB
|
P:SER241
|
3.7
|
217.4
|
1.0
|
|
HE1
|
P:HIS219
|
3.8
|
246.8
|
1.0
|
|
HD1
|
P:HIS239
|
3.9
|
251.1
|
1.0
|
|
HB3
|
P:CYS236
|
4.0
|
228.1
|
1.0
|
|
HB3
|
P:SER241
|
4.1
|
217.1
|
1.0
|
|
SG
|
P:CYS236
|
4.2
|
222.5
|
1.0
|
|
CB
|
P:HIS239
|
4.2
|
256.8
|
1.0
|
|
SG
|
P:CYS217
|
4.2
|
203.3
|
1.0
|
|
ND1
|
P:HIS239
|
4.3
|
259.9
|
1.0
|
|
CD2
|
P:HIS219
|
4.3
|
230.3
|
1.0
|
|
H
|
P:HIS239
|
4.4
|
246.3
|
1.0
|
|
H
|
P:SER241
|
4.4
|
228.7
|
1.0
|
|
NE2
|
P:HIS219
|
4.5
|
239.7
|
1.0
|
|
CG
|
P:HIS239
|
4.6
|
259.9
|
1.0
|
|
CB
|
P:CYS236
|
4.6
|
226.7
|
1.0
|
|
HB2
|
P:CYS238
|
4.6
|
235.2
|
1.0
|
|
O
|
P:LEU251
|
4.6
|
205.8
|
1.0
|
|
CA
|
P:HIS219
|
4.7
|
216.5
|
1.0
|
|
HB3
|
P:HIS239
|
4.7
|
253.0
|
1.0
|
|
HD22
|
P:LEU251
|
4.7
|
210.0
|
1.0
|
|
HH
|
P:TYR243
|
4.8
|
204.3
|
1.0
|
|
HB2
|
P:CYS236
|
4.8
|
222.4
|
1.0
|
|
H
|
P:HIS219
|
4.8
|
209.4
|
1.0
|
|
HA2
|
P:GLY252
|
4.8
|
206.5
|
1.0
|
|
N
|
P:HIS239
|
4.8
|
251.3
|
1.0
|
|
HD23
|
P:LEU251
|
4.9
|
207.0
|
1.0
|
|
HD2
|
P:PRO253
|
4.9
|
209.1
|
1.0
|
|
H
|
P:LEU220
|
4.9
|
210.8
|
1.0
|
|
HE2
|
P:TYR243
|
4.9
|
204.9
|
1.0
|
|
OH
|
P:TYR243
|
5.0
|
204.0
|
1.0
|
|
CA
|
P:SER241
|
5.0
|
216.6
|
1.0
|
|
HG
|
P:CYS217
|
5.0
|
199.6
|
1.0
|
|
Iron binding site 7 out
of 10 in 9hzl
Go back to
Iron Binding Sites List in 9hzl
Iron binding site 7 out
of 10 in the High Resolution Cryo-Em Structure of Human Complex III in Mitochondria
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of High Resolution Cryo-Em Structure of Human Complex III in Mitochondria within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Fe301
b:319.5
occ:1.00
|
FE2
|
P:FES301
|
0.0
|
319.5
|
1.0
|
|
HE1
|
P:HIS219
|
1.7
|
246.8
|
1.0
|
|
CE1
|
P:HIS219
|
2.1
|
247.9
|
1.0
|
|
ND1
|
P:HIS219
|
2.1
|
248.1
|
1.0
|
|
ND1
|
P:HIS239
|
2.1
|
259.9
|
1.0
|
|
S2
|
P:FES301
|
2.2
|
280.3
|
1.0
|
|
S1
|
P:FES301
|
2.2
|
268.5
|
1.0
|
|
HD1
|
P:HIS239
|
2.2
|
251.1
|
1.0
|
|
CG
|
P:HIS239
|
2.3
|
259.9
|
1.0
|
|
HB2
|
P:HIS239
|
2.3
|
253.4
|
1.0
|
|
CB
|
P:HIS239
|
2.7
|
256.8
|
1.0
|
|
FE1
|
P:FES301
|
2.7
|
306.5
|
1.0
|
|
CE1
|
P:HIS239
|
2.9
|
251.6
|
1.0
|
|
CD2
|
P:HIS239
|
3.0
|
249.7
|
1.0
|
|
HB3
|
P:HIS239
|
3.2
|
253.0
|
1.0
|
|
NE2
|
P:HIS239
|
3.3
|
241.3
|
1.0
|
|
NE2
|
P:HIS219
|
3.4
|
239.7
|
1.0
|
|
HE1
|
P:HIS239
|
3.4
|
244.7
|
1.0
|
|
CG
|
P:HIS219
|
3.5
|
232.8
|
1.0
|
|
HD2
|
P:HIS239
|
3.7
|
239.8
|
1.0
|
|
HD12
|
P:LEU220
|
3.9
|
215.9
|
1.0
|
|
HE2
|
P:HIS219
|
3.9
|
239.2
|
1.0
|
|
CA
|
P:HIS239
|
4.0
|
248.8
|
1.0
|
|
HG
|
P:SER241
|
4.0
|
225.5
|
1.0
|
|
CD2
|
P:HIS219
|
4.1
|
230.3
|
1.0
|
|
N
|
P:HIS239
|
4.1
|
251.3
|
1.0
|
|
OG
|
P:SER241
|
4.2
|
225.4
|
1.0
|
|
H
|
P:HIS239
|
4.2
|
246.3
|
1.0
|
|
HD11
|
P:LEU220
|
4.3
|
216.8
|
1.0
|
|
HB3
|
P:HIS219
|
4.3
|
223.0
|
1.0
|
|
HG
|
P:LEU220
|
4.4
|
214.8
|
1.0
|
|
CD1
|
P:LEU220
|
4.5
|
215.3
|
1.0
|
|
CB
|
P:HIS219
|
4.5
|
225.6
|
1.0
|
|
HA
|
P:HIS239
|
4.5
|
243.4
|
1.0
|
|
C
|
P:CYS238
|
4.7
|
244.3
|
1.0
|
|
HB3
|
P:CYS238
|
4.7
|
235.2
|
1.0
|
|
HB2
|
P:CYS238
|
4.7
|
235.2
|
1.0
|
|
HB2
|
P:HIS219
|
4.8
|
223.0
|
1.0
|
|
O
|
P:CYS238
|
4.9
|
233.6
|
1.0
|
|
C
|
P:HIS239
|
5.0
|
244.2
|
1.0
|
|
HD2
|
P:HIS219
|
5.0
|
229.8
|
1.0
|
|
CG
|
P:LEU220
|
5.0
|
210.6
|
1.0
|
|
Iron binding site 8 out
of 10 in 9hzl
Go back to
Iron Binding Sites List in 9hzl
Iron binding site 8 out
of 10 in the High Resolution Cryo-Em Structure of Human Complex III in Mitochondria
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of High Resolution Cryo-Em Structure of Human Complex III in Mitochondria within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
U:Fe402
b:79.1
occ:1.00
|
FE
|
U:HEC402
|
0.0
|
79.1
|
1.0
|
|
NE2
|
U:HIS125
|
1.8
|
60.3
|
1.0
|
|
NC
|
U:HEC402
|
2.0
|
60.5
|
1.0
|
|
NB
|
U:HEC402
|
2.0
|
57.2
|
1.0
|
|
NA
|
U:HEC402
|
2.0
|
58.2
|
1.0
|
|
ND
|
U:HEC402
|
2.1
|
66.3
|
1.0
|
|
CD2
|
U:HIS125
|
2.4
|
53.8
|
1.0
|
|
HD2
|
U:HIS125
|
2.4
|
53.5
|
1.0
|
|
SD
|
U:MET244
|
2.8
|
63.0
|
1.0
|
|
CE1
|
U:HIS125
|
3.0
|
57.7
|
1.0
|
|
C4A
|
U:HEC402
|
3.0
|
54.1
|
1.0
|
|
C4C
|
U:HEC402
|
3.0
|
62.9
|
1.0
|
|
C1B
|
U:HEC402
|
3.0
|
50.2
|
1.0
|
|
C1C
|
U:HEC402
|
3.1
|
58.9
|
1.0
|
|
C1D
|
U:HEC402
|
3.1
|
63.0
|
1.0
|
|
C1A
|
U:HEC402
|
3.1
|
50.5
|
1.0
|
|
C4D
|
U:HEC402
|
3.1
|
61.1
|
1.0
|
|
C4B
|
U:HEC402
|
3.1
|
60.0
|
1.0
|
|
HE1
|
U:MET244
|
3.3
|
64.5
|
1.0
|
|
CHB
|
U:HEC402
|
3.4
|
50.2
|
1.0
|
|
CHD
|
U:HEC402
|
3.4
|
61.0
|
1.0
|
|
CHC
|
U:HEC402
|
3.4
|
62.6
|
1.0
|
|
CHA
|
U:HEC402
|
3.4
|
60.0
|
1.0
|
|
HE1
|
U:HIS125
|
3.4
|
59.0
|
1.0
|
|
CE
|
U:MET244
|
3.6
|
66.7
|
1.0
|
|
CG
|
U:HIS125
|
3.7
|
53.8
|
1.0
|
|
ND1
|
U:HIS125
|
3.9
|
54.6
|
1.0
|
|
HE2
|
U:MET244
|
4.0
|
70.2
|
1.0
|
|
C3A
|
U:HEC402
|
4.2
|
45.4
|
1.0
|
|
C3C
|
U:HEC402
|
4.2
|
67.8
|
1.0
|
|
C2A
|
U:HEC402
|
4.2
|
47.4
|
1.0
|
|
C2C
|
U:HEC402
|
4.3
|
62.6
|
1.0
|
|
C2B
|
U:HEC402
|
4.3
|
54.3
|
1.0
|
|
HHB
|
U:HEC402
|
4.3
|
52.3
|
1.0
|
|
C3B
|
U:HEC402
|
4.3
|
63.1
|
1.0
|
|
C2D
|
U:HEC402
|
4.3
|
63.7
|
1.0
|
|
C3D
|
U:HEC402
|
4.3
|
57.8
|
1.0
|
|
HHD
|
U:HEC402
|
4.4
|
64.0
|
1.0
|
|
HHC
|
U:HEC402
|
4.4
|
63.8
|
1.0
|
|
HHA
|
U:HEC402
|
4.4
|
61.5
|
1.0
|
|
CG
|
U:MET244
|
4.4
|
77.0
|
1.0
|
|
HE3
|
U:MET244
|
4.4
|
69.5
|
1.0
|
|
HB2
|
U:MET244
|
4.5
|
71.1
|
1.0
|
|
HG3
|
U:MET244
|
4.5
|
75.9
|
1.0
|
|
HB3
|
U:PRO194
|
4.6
|
58.4
|
1.0
|
|
HD11
|
U:LEU197
|
4.6
|
57.7
|
1.0
|
|
HD1
|
U:HIS125
|
4.7
|
57.4
|
1.0
|
|
CB
|
U:HIS125
|
5.0
|
60.8
|
1.0
|
|
HB2
|
U:HIS125
|
5.0
|
63.2
|
1.0
|
|
Iron binding site 9 out
of 10 in 9hzl
Go back to
Iron Binding Sites List in 9hzl
Iron binding site 9 out
of 10 in the High Resolution Cryo-Em Structure of Human Complex III in Mitochondria
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of High Resolution Cryo-Em Structure of Human Complex III in Mitochondria within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
V:Fe401
b:54.5
occ:1.00
|
FE
|
V:HEM401
|
0.0
|
54.5
|
1.0
|
|
NE2
|
V:HIS182
|
1.8
|
50.7
|
1.0
|
|
NB
|
V:HEM401
|
2.0
|
44.9
|
1.0
|
|
NC
|
V:HEM401
|
2.0
|
40.1
|
1.0
|
|
NA
|
V:HEM401
|
2.1
|
42.2
|
1.0
|
|
ND
|
V:HEM401
|
2.1
|
35.8
|
1.0
|
|
HE1
|
V:HIS182
|
2.2
|
43.7
|
1.0
|
|
CE1
|
V:HIS182
|
2.3
|
42.0
|
1.0
|
|
NE2
|
V:HIS83
|
2.5
|
41.2
|
1.0
|
|
C4B
|
V:HEM401
|
3.0
|
38.1
|
1.0
|
|
C1C
|
V:HEM401
|
3.0
|
40.6
|
1.0
|
|
C1B
|
V:HEM401
|
3.1
|
38.7
|
1.0
|
|
C1A
|
V:HEM401
|
3.1
|
41.6
|
1.0
|
|
C4A
|
V:HEM401
|
3.1
|
38.6
|
1.0
|
|
C1D
|
V:HEM401
|
3.1
|
37.0
|
1.0
|
|
C4D
|
V:HEM401
|
3.1
|
36.1
|
1.0
|
|
C4C
|
V:HEM401
|
3.1
|
37.5
|
1.0
|
|
CD2
|
V:HIS182
|
3.1
|
44.8
|
1.0
|
|
HE1
|
V:HIS83
|
3.1
|
37.2
|
1.0
|
|
CE1
|
V:HIS83
|
3.2
|
34.9
|
1.0
|
|
CHC
|
V:HEM401
|
3.4
|
37.9
|
1.0
|
|
CHB
|
V:HEM401
|
3.4
|
35.8
|
1.0
|
|
CHA
|
V:HEM401
|
3.4
|
39.0
|
1.0
|
|
CHD
|
V:HEM401
|
3.5
|
36.2
|
1.0
|
|
ND1
|
V:HIS182
|
3.5
|
41.5
|
1.0
|
|
HD2
|
V:HIS182
|
3.6
|
43.8
|
1.0
|
|
CD2
|
V:HIS83
|
3.7
|
38.7
|
1.0
|
|
CG
|
V:HIS182
|
3.9
|
38.9
|
1.0
|
|
HD2
|
V:HIS83
|
4.0
|
37.9
|
1.0
|
|
HA3
|
V:GLY130
|
4.1
|
46.5
|
1.0
|
|
HD1
|
V:HIS182
|
4.2
|
44.5
|
1.0
|
|
C3B
|
V:HEM401
|
4.2
|
42.2
|
1.0
|
|
C2B
|
V:HEM401
|
4.3
|
34.0
|
1.0
|
|
C2C
|
V:HEM401
|
4.3
|
38.2
|
1.0
|
|
C3C
|
V:HEM401
|
4.3
|
36.9
|
1.0
|
|
C2A
|
V:HEM401
|
4.3
|
44.0
|
1.0
|
|
C3A
|
V:HEM401
|
4.3
|
39.0
|
1.0
|
|
C2D
|
V:HEM401
|
4.3
|
38.9
|
1.0
|
|
C3D
|
V:HEM401
|
4.3
|
37.8
|
1.0
|
|
HHD
|
V:HEM401
|
4.4
|
37.2
|
1.0
|
|
HHC
|
V:HEM401
|
4.4
|
40.4
|
1.0
|
|
HHA
|
V:HEM401
|
4.4
|
42.1
|
1.0
|
|
HHB
|
V:HEM401
|
4.4
|
39.8
|
1.0
|
|
ND1
|
V:HIS83
|
4.4
|
33.2
|
1.0
|
|
HE21
|
V:GLN44
|
4.5
|
42.0
|
1.0
|
|
HA2
|
V:GLY130
|
4.6
|
44.8
|
1.0
|
|
HD12
|
V:LEU133
|
4.6
|
43.3
|
1.0
|
|
CG
|
V:HIS83
|
4.7
|
38.7
|
1.0
|
|
HE22
|
V:GLN44
|
4.7
|
42.3
|
1.0
|
|
HA3
|
V:GLY48
|
4.8
|
40.0
|
1.0
|
|
CA
|
V:GLY130
|
4.8
|
43.3
|
1.0
|
|
HG22
|
V:THR126
|
4.8
|
47.3
|
1.0
|
|
NE2
|
V:GLN44
|
4.9
|
41.0
|
1.0
|
|
Iron binding site 10 out
of 10 in 9hzl
Go back to
Iron Binding Sites List in 9hzl
Iron binding site 10 out
of 10 in the High Resolution Cryo-Em Structure of Human Complex III in Mitochondria
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of High Resolution Cryo-Em Structure of Human Complex III in Mitochondria within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
V:Fe402
b:58.6
occ:1.00
|
FE
|
V:HEM402
|
0.0
|
58.6
|
1.0
|
|
NB
|
V:HEM402
|
2.0
|
44.8
|
1.0
|
|
NC
|
V:HEM402
|
2.0
|
42.8
|
1.0
|
|
NA
|
V:HEM402
|
2.1
|
43.2
|
1.0
|
|
ND
|
V:HEM402
|
2.1
|
37.8
|
1.0
|
|
HE2
|
V:HIS196
|
2.3
|
52.1
|
1.0
|
|
NE2
|
V:HIS97
|
2.5
|
43.3
|
1.0
|
|
NE2
|
V:HIS196
|
2.6
|
51.2
|
1.0
|
|
C1B
|
V:HEM402
|
3.0
|
44.5
|
1.0
|
|
C1C
|
V:HEM402
|
3.0
|
41.9
|
1.0
|
|
C4A
|
V:HEM402
|
3.0
|
40.1
|
1.0
|
|
C4B
|
V:HEM402
|
3.1
|
39.3
|
1.0
|
|
C1A
|
V:HEM402
|
3.1
|
40.3
|
1.0
|
|
C1D
|
V:HEM402
|
3.1
|
41.9
|
1.0
|
|
C4C
|
V:HEM402
|
3.1
|
35.6
|
1.0
|
|
C4D
|
V:HEM402
|
3.1
|
37.3
|
1.0
|
|
CD2
|
V:HIS196
|
3.2
|
46.7
|
1.0
|
|
HD2
|
V:HIS97
|
3.2
|
43.0
|
1.0
|
|
CD2
|
V:HIS97
|
3.3
|
41.5
|
1.0
|
|
CE1
|
V:HIS196
|
3.3
|
46.6
|
1.0
|
|
CHB
|
V:HEM402
|
3.4
|
42.8
|
1.0
|
|
CHC
|
V:HEM402
|
3.4
|
41.5
|
1.0
|
|
HD2
|
V:HIS196
|
3.4
|
47.9
|
1.0
|
|
CHD
|
V:HEM402
|
3.4
|
38.5
|
1.0
|
|
CHA
|
V:HEM402
|
3.5
|
40.7
|
1.0
|
|
HE1
|
V:HIS196
|
3.5
|
48.4
|
1.0
|
|
CE1
|
V:HIS97
|
3.7
|
45.9
|
1.0
|
|
HE1
|
V:HIS97
|
3.9
|
45.9
|
1.0
|
|
CG
|
V:HIS196
|
4.1
|
47.4
|
1.0
|
|
ND1
|
V:HIS196
|
4.1
|
48.4
|
1.0
|
|
C2B
|
V:HEM402
|
4.3
|
45.0
|
1.0
|
|
C3A
|
V:HEM402
|
4.3
|
37.1
|
1.0
|
|
C2C
|
V:HEM402
|
4.3
|
39.6
|
1.0
|
|
C2A
|
V:HEM402
|
4.3
|
40.8
|
1.0
|
|
C3B
|
V:HEM402
|
4.3
|
41.5
|
1.0
|
|
C3C
|
V:HEM402
|
4.3
|
37.2
|
1.0
|
|
C2D
|
V:HEM402
|
4.3
|
40.0
|
1.0
|
|
C3D
|
V:HEM402
|
4.3
|
42.4
|
1.0
|
|
HHB
|
V:HEM402
|
4.3
|
44.4
|
1.0
|
|
HHD
|
V:HEM402
|
4.3
|
40.6
|
1.0
|
|
HHC
|
V:HEM402
|
4.3
|
43.1
|
1.0
|
|
HHA
|
V:HEM402
|
4.4
|
44.6
|
1.0
|
|
CG
|
V:HIS97
|
4.5
|
45.5
|
1.0
|
|
ND1
|
V:HIS97
|
4.7
|
50.0
|
1.0
|
|
HH22
|
V:ARG100
|
4.7
|
52.7
|
1.0
|
|
HD13
|
V:LEU119
|
4.7
|
46.0
|
1.0
|
|
HD12
|
V:LEU37
|
4.7
|
49.0
|
1.0
|
|
HD13
|
V:LEU37
|
4.9
|
49.5
|
1.0
|
|
HG22
|
V:THR112
|
4.9
|
53.3
|
1.0
|
|
HA2
|
V:GLY34
|
5.0
|
48.9
|
1.0
|
|
Reference:
M.D.Nguyen,
A.Khajawa,
J.Rorbach.
Structural Basis For Late Maturation Steps of Mitochondrial Respiratory Chain Complex IV Within the Human Respirasome To Be Published.
Page generated: Sat Dec 13 17:03:02 2025
|
