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Iron in PDB 9jg7: Artificial Serine-Dependent Beta-Lactamase, S2

Protein crystallography data

The structure of Artificial Serine-Dependent Beta-Lactamase, S2, PDB code: 9jg7 was solved by W.J.Song, J.Yu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.72 / 1.93
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 67.099, 92.031, 142.456, 90, 90, 90
R / Rfree (%) 18.4 / 23.1

Other elements in 9jg7:

The structure of Artificial Serine-Dependent Beta-Lactamase, S2 also contains other interesting chemical elements:

Zinc (Zn) 8 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Artificial Serine-Dependent Beta-Lactamase, S2 (pdb code 9jg7). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Artificial Serine-Dependent Beta-Lactamase, S2, PDB code: 9jg7:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 9jg7

Go back to Iron Binding Sites List in 9jg7
Iron binding site 1 out of 8 in the Artificial Serine-Dependent Beta-Lactamase, S2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Artificial Serine-Dependent Beta-Lactamase, S2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:15.1
occ:1.00
FE A:HEC201 0.0 15.1 1.0
NE2 A:HIS102 2.0 14.8 1.0
ND A:HEC201 2.0 16.9 1.0
NA A:HEC201 2.0 14.8 1.0
NB A:HEC201 2.1 15.5 1.0
NC A:HEC201 2.1 13.8 1.0
SD A:MET7 2.4 15.7 1.0
CE1 A:HIS102 2.9 16.7 1.0
CD2 A:HIS102 3.0 14.5 1.0
C1A A:HEC201 3.0 17.6 1.0
C4D A:HEC201 3.0 19.1 1.0
C4A A:HEC201 3.1 16.4 1.0
C4B A:HEC201 3.1 15.7 1.0
C1D A:HEC201 3.1 15.4 1.0
C1B A:HEC201 3.1 16.9 1.0
C1C A:HEC201 3.1 15.2 1.0
C4C A:HEC201 3.1 14.0 1.0
CHA A:HEC201 3.4 19.8 1.0
CHC A:HEC201 3.4 14.9 1.0
CHB A:HEC201 3.5 16.6 1.0
CG A:MET7 3.5 13.5 1.0
CHD A:HEC201 3.5 13.9 1.0
CE A:MET7 3.5 14.5 1.0
ND1 A:HIS102 4.1 15.6 1.0
CG A:HIS102 4.1 14.0 1.0
CB A:MET7 4.2 16.9 1.0
C2A A:HEC201 4.2 14.9 1.0
C3A A:HEC201 4.3 17.5 1.0
C3D A:HEC201 4.3 16.4 1.0
C2D A:HEC201 4.3 17.5 1.0
C3B A:HEC201 4.3 15.5 1.0
C2B A:HEC201 4.3 17.4 1.0
C3C A:HEC201 4.3 14.3 1.0
C2C A:HEC201 4.3 14.4 1.0

Iron binding site 2 out of 8 in 9jg7

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Iron binding site 2 out of 8 in the Artificial Serine-Dependent Beta-Lactamase, S2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Artificial Serine-Dependent Beta-Lactamase, S2 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe201

b:13.2
occ:1.00
FE C:HEC201 0.0 13.2 1.0
NE2 C:HIS102 2.0 14.0 1.0
NB C:HEC201 2.0 12.1 1.0
NA C:HEC201 2.0 15.4 1.0
ND C:HEC201 2.0 13.7 1.0
NC C:HEC201 2.0 11.2 1.0
SD C:MET7 2.4 15.0 1.0
CE1 C:HIS102 3.0 16.5 1.0
CD2 C:HIS102 3.0 14.7 1.0
C4B C:HEC201 3.0 15.1 1.0
C1A C:HEC201 3.0 18.3 1.0
C1D C:HEC201 3.1 16.4 1.0
C4D C:HEC201 3.1 15.0 1.0
C4A C:HEC201 3.1 15.8 1.0
C1C C:HEC201 3.1 13.5 1.0
C4C C:HEC201 3.1 13.7 1.0
C1B C:HEC201 3.1 16.0 1.0
CHC C:HEC201 3.4 13.4 1.0
CHA C:HEC201 3.4 16.3 1.0
CHD C:HEC201 3.4 13.6 1.0
CE C:MET7 3.4 14.9 1.0
CG C:MET7 3.5 11.4 1.0
CHB C:HEC201 3.5 13.3 1.0
ND1 C:HIS102 4.1 14.2 1.0
CG C:HIS102 4.1 12.9 1.0
CB C:MET7 4.2 15.3 1.0
C2A C:HEC201 4.3 15.8 1.0
C3A C:HEC201 4.3 17.9 1.0
C3B C:HEC201 4.3 14.0 1.0
C2D C:HEC201 4.3 16.2 1.0
C3D C:HEC201 4.3 15.0 1.0
C2B C:HEC201 4.3 15.3 1.0
C2C C:HEC201 4.3 13.3 1.0
C3C C:HEC201 4.3 12.2 1.0

Iron binding site 3 out of 8 in 9jg7

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Iron binding site 3 out of 8 in the Artificial Serine-Dependent Beta-Lactamase, S2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Artificial Serine-Dependent Beta-Lactamase, S2 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe201

b:15.7
occ:1.00
FE E:HEC201 0.0 15.7 1.0
ND E:HEC201 2.0 11.8 1.0
NC E:HEC201 2.0 13.6 1.0
NE2 E:HIS102 2.0 13.9 1.0
NA E:HEC201 2.0 16.2 1.0
NB E:HEC201 2.1 14.7 1.0
SD E:MET7 2.4 15.8 1.0
CD2 E:HIS102 2.9 15.2 1.0
C1D E:HEC201 3.0 13.0 1.0
C4D E:HEC201 3.0 15.7 1.0
C1C E:HEC201 3.0 14.5 1.0
C4C E:HEC201 3.0 14.2 1.0
C4B E:HEC201 3.0 15.9 1.0
C1A E:HEC201 3.1 17.1 1.0
C4A E:HEC201 3.1 18.6 1.0
CE1 E:HIS102 3.1 18.9 1.0
C1B E:HEC201 3.1 17.4 1.0
CE E:MET7 3.4 16.9 1.0
CHD E:HEC201 3.4 12.6 1.0
CHC E:HEC201 3.4 13.9 1.0
CHA E:HEC201 3.4 16.5 1.0
CHB E:HEC201 3.5 14.6 1.0
CG E:MET7 3.5 14.6 1.0
CG E:HIS102 4.1 17.2 1.0
ND1 E:HIS102 4.1 15.8 1.0
CB E:MET7 4.2 18.0 1.0
C2D E:HEC201 4.2 14.2 1.0
C3D E:HEC201 4.2 14.0 1.0
C2C E:HEC201 4.3 16.1 1.0
C3C E:HEC201 4.3 13.6 1.0
C2A E:HEC201 4.3 20.7 1.0
C3B E:HEC201 4.3 16.3 1.0
C3A E:HEC201 4.3 19.1 1.0
C2B E:HEC201 4.3 17.6 1.0
NH1 E:ARG106 4.8 21.2 1.0

Iron binding site 4 out of 8 in 9jg7

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Iron binding site 4 out of 8 in the Artificial Serine-Dependent Beta-Lactamase, S2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Artificial Serine-Dependent Beta-Lactamase, S2 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe201

b:16.9
occ:1.00
FE G:HEC201 0.0 16.9 1.0
NB G:HEC201 2.0 11.1 1.0
ND G:HEC201 2.0 16.2 1.0
NA G:HEC201 2.0 17.3 1.0
NE2 G:HIS102 2.1 14.9 1.0
NC G:HEC201 2.1 14.3 1.0
SD G:MET7 2.4 16.1 1.0
C4B G:HEC201 3.0 16.2 1.0
C4D G:HEC201 3.0 17.8 1.0
CD2 G:HIS102 3.0 16.3 1.0
C1B G:HEC201 3.0 17.1 1.0
C1D G:HEC201 3.0 16.2 1.0
C1A G:HEC201 3.1 18.2 1.0
CE1 G:HIS102 3.1 19.5 1.0
C1C G:HEC201 3.1 15.0 1.0
C4A G:HEC201 3.1 17.1 1.0
C4C G:HEC201 3.1 14.1 1.0
CE G:MET7 3.4 16.6 1.0
CHA G:HEC201 3.4 20.1 1.0
CHC G:HEC201 3.4 15.1 1.0
CHB G:HEC201 3.4 17.9 1.0
CG G:MET7 3.4 14.4 1.0
CHD G:HEC201 3.5 16.1 1.0
ND1 G:HIS102 4.2 19.6 1.0
CG G:HIS102 4.2 18.7 1.0
C3D G:HEC201 4.2 19.3 1.0
C2B G:HEC201 4.2 15.8 1.0
CB G:MET7 4.2 19.2 1.0
C3B G:HEC201 4.2 15.9 1.0
C2D G:HEC201 4.2 18.9 1.0
C3A G:HEC201 4.3 21.3 1.0
C2A G:HEC201 4.3 22.0 1.0
C2C G:HEC201 4.3 15.3 1.0
C3C G:HEC201 4.3 12.5 1.0
NH1 G:ARG106 5.0 24.0 1.0

Iron binding site 5 out of 8 in 9jg7

Go back to Iron Binding Sites List in 9jg7
Iron binding site 5 out of 8 in the Artificial Serine-Dependent Beta-Lactamase, S2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Artificial Serine-Dependent Beta-Lactamase, S2 within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe201

b:21.6
occ:1.00
FE I:HEC201 0.0 21.6 1.0
NE2 I:HIS102 1.9 22.9 1.0
ND I:HEC201 2.0 20.2 1.0
NB I:HEC201 2.0 21.5 1.0
NA I:HEC201 2.1 23.4 1.0
NC I:HEC201 2.1 19.3 1.0
SD I:MET7 2.4 23.1 1.0
CE1 I:HIS102 2.9 23.1 1.0
CD2 I:HIS102 3.0 23.2 1.0
C4D I:HEC201 3.0 27.0 1.0
C4B I:HEC201 3.0 20.6 1.0
C1D I:HEC201 3.0 22.6 1.0
C1A I:HEC201 3.1 27.5 1.0
C1C I:HEC201 3.1 20.7 1.0
C1B I:HEC201 3.1 23.9 1.0
C4A I:HEC201 3.1 24.4 1.0
C4C I:HEC201 3.1 21.4 1.0
CG I:MET7 3.4 17.8 1.0
CHA I:HEC201 3.4 23.4 1.0
CHC I:HEC201 3.4 19.2 1.0
CE I:MET7 3.4 17.8 1.0
CHD I:HEC201 3.5 21.8 1.0
CHB I:HEC201 3.5 24.3 1.0
ND1 I:HIS102 4.0 26.4 1.0
CG I:HIS102 4.1 27.7 1.0
CB I:MET7 4.1 25.5 1.0
C3D I:HEC201 4.2 24.6 1.0
C2D I:HEC201 4.2 22.4 1.0
C3B I:HEC201 4.3 24.8 1.0
C2B I:HEC201 4.3 25.9 1.0
C2A I:HEC201 4.3 26.8 1.0
C3A I:HEC201 4.3 28.2 1.0
C2C I:HEC201 4.3 18.0 1.0
C3C I:HEC201 4.3 19.4 1.0
CA I:MET7 5.0 22.6 1.0

Iron binding site 6 out of 8 in 9jg7

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Iron binding site 6 out of 8 in the Artificial Serine-Dependent Beta-Lactamase, S2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Artificial Serine-Dependent Beta-Lactamase, S2 within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Fe201

b:28.0
occ:1.00
FE K:HEC201 0.0 28.0 1.0
NE2 K:HIS102 1.9 26.6 1.0
NB K:HEC201 2.0 23.9 1.0
ND K:HEC201 2.1 28.5 1.0
NC K:HEC201 2.1 25.7 1.0
NA K:HEC201 2.1 28.2 1.0
SD K:MET7 2.5 28.9 1.0
CE1 K:HIS102 2.8 26.6 1.0
CD2 K:HIS102 3.0 26.8 1.0
C4B K:HEC201 3.0 29.0 1.0
C1C K:HEC201 3.0 26.1 1.0
C4D K:HEC201 3.1 28.2 1.0
C1A K:HEC201 3.1 30.9 1.0
C1B K:HEC201 3.1 28.6 1.0
C4A K:HEC201 3.1 26.6 1.0
C1D K:HEC201 3.1 25.9 1.0
C4C K:HEC201 3.1 25.0 1.0
CHC K:HEC201 3.3 25.9 1.0
CHA K:HEC201 3.4 30.4 1.0
CE K:MET7 3.5 23.8 1.0
CG K:MET7 3.5 27.2 1.0
CHB K:HEC201 3.5 28.2 1.0
CHD K:HEC201 3.5 28.3 1.0
ND1 K:HIS102 4.0 24.2 1.0
CG K:HIS102 4.1 23.9 1.0
C3B K:HEC201 4.2 26.4 1.0
CB K:MET7 4.2 27.9 1.0
C2B K:HEC201 4.3 28.7 1.0
C2C K:HEC201 4.3 21.2 1.0
C3D K:HEC201 4.3 31.9 1.0
C2D K:HEC201 4.3 26.9 1.0
C2A K:HEC201 4.3 32.2 1.0
C3A K:HEC201 4.3 32.3 1.0
C3C K:HEC201 4.3 25.8 1.0

Iron binding site 7 out of 8 in 9jg7

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Iron binding site 7 out of 8 in the Artificial Serine-Dependent Beta-Lactamase, S2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Artificial Serine-Dependent Beta-Lactamase, S2 within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Fe201

b:23.9
occ:1.00
FE M:HEC201 0.0 23.9 1.0
NB M:HEC201 2.0 19.1 1.0
ND M:HEC201 2.0 25.3 1.0
NC M:HEC201 2.0 18.2 1.0
NA M:HEC201 2.1 26.9 1.0
NE2 M:HIS102 2.1 23.7 1.0
SD M:MET7 2.5 25.5 1.0
C4B M:HEC201 3.0 22.0 1.0
C1C M:HEC201 3.0 21.1 1.0
CD2 M:HIS102 3.0 24.5 1.0
C1B M:HEC201 3.0 24.9 1.0
C4D M:HEC201 3.1 27.5 1.0
C1D M:HEC201 3.1 27.8 1.0
C1A M:HEC201 3.1 28.7 1.0
C4C M:HEC201 3.1 22.2 1.0
C4A M:HEC201 3.1 26.8 1.0
CE1 M:HIS102 3.2 25.0 1.0
CHC M:HEC201 3.3 23.3 1.0
CHA M:HEC201 3.4 28.3 1.0
CE M:MET7 3.4 24.4 1.0
CHD M:HEC201 3.5 23.7 1.0
CHB M:HEC201 3.5 27.5 1.0
CG M:MET7 3.5 27.2 1.0
CG M:HIS102 4.2 26.4 1.0
C3B M:HEC201 4.2 22.3 1.0
C2B M:HEC201 4.2 23.9 1.0
ND1 M:HIS102 4.2 22.0 1.0
C2C M:HEC201 4.3 18.3 1.0
CB M:MET7 4.3 28.4 1.0
C2D M:HEC201 4.3 22.6 1.0
C3D M:HEC201 4.3 30.9 1.0
C3C M:HEC201 4.3 16.4 1.0
C2A M:HEC201 4.3 30.4 1.0
C3A M:HEC201 4.3 28.5 1.0

Iron binding site 8 out of 8 in 9jg7

Go back to Iron Binding Sites List in 9jg7
Iron binding site 8 out of 8 in the Artificial Serine-Dependent Beta-Lactamase, S2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Artificial Serine-Dependent Beta-Lactamase, S2 within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Fe201

b:27.7
occ:1.00
FE O:HEC201 0.0 27.7 1.0
NE2 O:HIS102 2.0 28.6 1.0
NA O:HEC201 2.0 27.0 1.0
NB O:HEC201 2.0 25.3 1.0
ND O:HEC201 2.0 27.6 1.0
NC O:HEC201 2.0 28.2 1.0
SD O:MET7 2.6 29.8 1.0
CD2 O:HIS102 3.0 28.6 1.0
CE1 O:HIS102 3.0 30.9 1.0
C4B O:HEC201 3.0 25.0 1.0
C4D O:HEC201 3.0 29.2 1.0
C1C O:HEC201 3.0 23.5 1.0
C1A O:HEC201 3.0 34.6 1.0
C1B O:HEC201 3.1 28.4 1.0
C4A O:HEC201 3.1 29.1 1.0
C1D O:HEC201 3.1 23.8 1.0
C4C O:HEC201 3.1 27.4 1.0
CHC O:HEC201 3.4 26.9 1.0
CHA O:HEC201 3.4 30.0 1.0
CHB O:HEC201 3.5 27.4 1.0
CHD O:HEC201 3.5 27.4 1.0
CE O:MET7 3.5 24.1 1.0
CG O:MET7 3.6 25.7 1.0
ND1 O:HIS102 4.1 34.2 1.0
CG O:HIS102 4.1 29.7 1.0
CB O:MET7 4.2 27.1 1.0
C3B O:HEC201 4.3 27.4 1.0
C3D O:HEC201 4.3 26.8 1.0
C2A O:HEC201 4.3 33.3 1.0
C2C O:HEC201 4.3 24.5 1.0
C2D O:HEC201 4.3 26.9 1.0
C2B O:HEC201 4.3 24.2 1.0
C3A O:HEC201 4.3 31.7 1.0
C3C O:HEC201 4.3 26.0 1.0

Reference:

W.J.Song, J.Yu. Chemical Crossover Between Metallo- and Serine-Dependent Beta-Lactamases To Be Published.
Page generated: Sat Dec 13 17:28:16 2025

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