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Iron in PDB 108m: Sperm Whale Myoglobin V68F N-Butyl Isocyanide at pH 7.0

Protein crystallography data

The structure of Sperm Whale Myoglobin V68F N-Butyl Isocyanide at pH 7.0, PDB code: 108m was solved by R.D.Smith, J.S.Olson, G.N.Phillips Jr., with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 5.00 / 2.67
Space group P 6
Cell size a, b, c (Å), α, β, γ (°) 91.622, 91.622, 45.984, 90.00, 90.00, 120.00
R / Rfree (%) 12.4 / 22.6

Iron Binding Sites:

The binding sites of Iron atom in the Sperm Whale Myoglobin V68F N-Butyl Isocyanide at pH 7.0 (pdb code 108m). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Sperm Whale Myoglobin V68F N-Butyl Isocyanide at pH 7.0, PDB code: 108m:

Iron binding site 1 out of 1 in 108m

Go back to Iron Binding Sites List in 108m
Iron binding site 1 out of 1 in the Sperm Whale Myoglobin V68F N-Butyl Isocyanide at pH 7.0


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Sperm Whale Myoglobin V68F N-Butyl Isocyanide at pH 7.0 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe155

b:23.4
occ:1.00
FE A:HEM155 0.0 23.4 1.0
NA A:HEM155 1.8 24.0 1.0
NC A:HEM155 1.9 23.3 1.0
ND A:HEM155 2.0 25.5 1.0
NB A:HEM155 2.1 23.3 1.0
C A:NBN156 2.1 25.0 1.0
NE2 A:HIS93 2.2 22.2 1.0
C1A A:HEM155 2.9 24.3 1.0
C4A A:HEM155 2.9 23.9 1.0
C1C A:HEM155 2.9 23.4 1.0
C4D A:HEM155 3.0 25.8 1.0
C4C A:HEM155 3.0 23.8 1.0
C4B A:HEM155 3.1 22.2 1.0
N A:NBN156 3.1 25.8 1.0
C1D A:HEM155 3.1 25.7 1.0
C1B A:HEM155 3.2 23.1 1.0
CE1 A:HIS93 3.2 19.9 1.0
CHA A:HEM155 3.2 25.0 1.0
CD2 A:HIS93 3.2 18.7 1.0
CHC A:HEM155 3.3 22.8 1.0
CHB A:HEM155 3.4 23.3 1.0
CHD A:HEM155 3.5 24.5 1.0
C3A A:HEM155 4.1 24.1 1.0
C2A A:HEM155 4.1 24.6 1.0
C2 A:NBN156 4.2 25.8 0.5
C1 A:NBN156 4.2 25.6 0.5
C2C A:HEM155 4.2 23.7 1.0
C3D A:HEM155 4.2 26.9 1.0
C3C A:HEM155 4.3 23.7 1.0
ND1 A:HIS93 4.3 22.9 1.0
C3B A:HEM155 4.4 22.5 1.0
C2D A:HEM155 4.4 26.3 1.0
CG A:HIS93 4.4 19.8 1.0
C2B A:HEM155 4.4 22.7 1.0
C1 A:NBN156 4.4 26.1 0.5
NE2 A:HIS64 4.4 49.4 0.5
C2 A:NBN156 4.5 26.4 0.5

Reference:

R.D.Smith, R.D.Smith, J.S.Olson, G.N.Phillips Jr.. N/A N/A.
Page generated: Wed Jul 16 11:58:20 2025

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