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Iron in PDB 1bzp: Atomic Resolution Crystal Structure Analysis of Native Deoxy and Co Myoglobin From Sperm Whale at Room Temperature

Protein crystallography data

The structure of Atomic Resolution Crystal Structure Analysis of Native Deoxy and Co Myoglobin From Sperm Whale at Room Temperature, PDB code: 1bzp was solved by G.S.Kachalova, A.N.Popov, H.D.Bartunik, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 12.00 / 1.15
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 35.150, 31.040, 64.590, 90.00, 105.58, 90.00
R / Rfree (%) 11.4 / n/a

Iron Binding Sites:

The binding sites of Iron atom in the Atomic Resolution Crystal Structure Analysis of Native Deoxy and Co Myoglobin From Sperm Whale at Room Temperature (pdb code 1bzp). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Atomic Resolution Crystal Structure Analysis of Native Deoxy and Co Myoglobin From Sperm Whale at Room Temperature, PDB code: 1bzp:

Iron binding site 1 out of 1 in 1bzp

Go back to Iron Binding Sites List in 1bzp
Iron binding site 1 out of 1 in the Atomic Resolution Crystal Structure Analysis of Native Deoxy and Co Myoglobin From Sperm Whale at Room Temperature


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Atomic Resolution Crystal Structure Analysis of Native Deoxy and Co Myoglobin From Sperm Whale at Room Temperature within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe154

b:10.8
occ:1.00
FE A:HEM154 0.0 10.8 1.0
NA A:HEM154 2.0 11.4 1.0
NB A:HEM154 2.1 10.6 1.0
NC A:HEM154 2.1 10.8 1.0
ND A:HEM154 2.1 12.0 1.0
NE2 A:HIS93 2.1 10.4 1.0
C1B A:HEM154 3.0 10.0 1.0
C4B A:HEM154 3.1 10.0 1.0
C4A A:HEM154 3.1 11.2 1.0
C4D A:HEM154 3.1 11.9 1.0
C1C A:HEM154 3.1 10.7 1.0
CE1 A:HIS93 3.1 13.3 1.0
C1A A:HEM154 3.1 11.6 1.0
C4C A:HEM154 3.1 10.8 1.0
C1D A:HEM154 3.1 11.9 1.0
CD2 A:HIS93 3.2 11.2 1.0
CHB A:HEM154 3.4 11.3 1.0
CHA A:HEM154 3.4 13.4 1.0
CHC A:HEM154 3.4 10.4 1.0
CHD A:HEM154 3.5 11.9 1.0
O A:HOH378 3.7 22.2 0.6
ND1 A:HIS93 4.3 13.5 1.0
C2B A:HEM154 4.3 10.2 1.0
C3D A:HEM154 4.3 13.5 1.0
C3B A:HEM154 4.3 10.3 1.0
C3A A:HEM154 4.3 13.3 1.0
C2A A:HEM154 4.3 13.2 1.0
CG A:HIS93 4.3 10.4 1.0
C2D A:HEM154 4.3 13.3 1.0
C2C A:HEM154 4.4 10.9 1.0
C3C A:HEM154 4.4 11.3 1.0
CE1 A:HIS64 4.5 15.4 0.5
NE2 A:HIS64 4.6 17.9 0.5
NE2 A:HIS64 4.6 16.9 0.5
CG2 A:VAL68 4.7 13.7 1.0

Reference:

G.S.Kachalova, A.N.Popov, H.D.Bartunik. A Steric Mechanism For Inhibition of Co Binding to Heme Proteins. Science V. 284 473 1999.
ISSN: ISSN 0036-8075
PubMed: 10205052
DOI: 10.1126/SCIENCE.284.5413.473
Page generated: Sat Aug 3 02:58:44 2024

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