Iron in PDB 1cfm: Cytochrome F From Chlamydomonas Reinhardtii

The structure of Cytochrome F From Chlamydomonas Reinhardtii, PDB code: 1cfm was solved by Y.I.Chi, L.S.Huang, Z.Zhang, J.G.Fernandez-Velasco, R.Malkin, E.A.Berry, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.00 / 2.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	75.624, 94.943, 119.920, 90.00, 90.00, 90.00
R / Rfree (%)	21.4 / 27.1

The binding sites of Iron atom in the Cytochrome F From Chlamydomonas Reinhardtii (pdb code 1cfm). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 3 binding sites of Iron where determined in the Cytochrome F From Chlamydomonas Reinhardtii, PDB code: 1cfm:
Jump to Iron binding site number: 1; 2; 3;

Iron binding site 1 out of 3 in the Cytochrome F From Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cytochrome F From Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe253 b:15.6 occ:1.00 FE A:HEM253 0.0 15.6 1.0 NA A:HEM253 1.9 10.2 1.0 NB A:HEM253 2.0 13.2 1.0 ND A:HEM253 2.0 15.1 1.0 NC A:HEM253 2.0 14.2 1.0 NE2 A:HIS25 2.7 25.1 1.0 N A:TYR1 2.7 17.4 1.0 C1A A:HEM253 3.0 11.6 1.0 C4B A:HEM253 3.0 15.4 1.0 C4D A:HEM253 3.0 14.1 1.0 C1B A:HEM253 3.0 13.1 1.0 C4A A:HEM253 3.0 10.6 1.0 C1D A:HEM253 3.0 14.7 1.0 C1C A:HEM253 3.0 15.7 1.0 C4C A:HEM253 3.0 15.6 1.0 CA A:TYR1 3.3 14.3 1.0 CHA A:HEM253 3.4 10.6 1.0 CHC A:HEM253 3.4 16.9 1.0 CHB A:HEM253 3.4 12.6 1.0 CHD A:HEM253 3.4 13.2 1.0 CD2 A:HIS25 3.4 24.6 1.0 CE1 A:HIS25 3.7 22.7 1.0 C A:TYR1 4.0 13.6 1.0 O A:TYR1 4.1 15.6 1.0 C3B A:HEM253 4.2 16.5 1.0 C2B A:HEM253 4.2 14.8 1.0 C2A A:HEM253 4.2 10.8 1.0 C3A A:HEM253 4.2 9.6 1.0 C3D A:HEM253 4.2 16.2 1.0 C3C A:HEM253 4.3 16.3 1.0 C2D A:HEM253 4.3 14.8 1.0 C2C A:HEM253 4.3 16.9 1.0 CG A:HIS25 4.6 21.4 1.0 ND1 A:HIS25 4.7 23.7 1.0 CB A:TYR1 4.7 14.6 1.0 CD2 A:PHE4 4.7 15.1 1.0 N A:PRO2 4.9 14.3 1.0 CG A:TYR1 4.9 15.8 1.0 ND2 A:ASN153 5.0 12.3 1.0

Iron binding site 2 out of 3 in the Cytochrome F From Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cytochrome F From Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe254 b:15.8 occ:1.00 FE B:HEM254 0.0 15.8 1.0 ND B:HEM254 2.0 13.6 1.0 NB B:HEM254 2.0 13.5 1.0 NC B:HEM254 2.0 14.7 1.0 NA B:HEM254 2.0 14.0 1.0 NE2 B:HIS25 2.6 14.9 1.0 N B:TYR1 2.7 19.2 1.0 C4B B:HEM254 3.0 12.2 1.0 C4D B:HEM254 3.0 14.0 1.0 C1D B:HEM254 3.0 13.5 1.0 C4C B:HEM254 3.0 15.6 1.0 C1C B:HEM254 3.0 15.2 1.0 C1B B:HEM254 3.0 12.6 1.0 C1A B:HEM254 3.0 14.2 1.0 C4A B:HEM254 3.0 11.9 1.0 CA B:TYR1 3.3 16.5 1.0 CD2 B:HIS25 3.3 15.4 1.0 CHC B:HEM254 3.4 13.8 1.0 CHD B:HEM254 3.4 14.2 1.0 CHA B:HEM254 3.4 11.3 1.0 CHB B:HEM254 3.4 12.1 1.0 CE1 B:HIS25 3.7 10.5 1.0 C B:TYR1 3.8 16.9 1.0 O B:TYR1 3.9 14.2 1.0 C3B B:HEM254 4.2 13.3 1.0 C3D B:HEM254 4.2 12.2 1.0 C3C B:HEM254 4.2 15.2 1.0 C2B B:HEM254 4.3 10.7 1.0 C2C B:HEM254 4.3 14.5 1.0 C2D B:HEM254 4.3 13.1 1.0 C3A B:HEM254 4.3 13.6 1.0 C2A B:HEM254 4.3 12.2 1.0 CG B:HIS25 4.6 13.0 1.0 CD2 B:PHE4 4.7 18.6 1.0 ND1 B:HIS25 4.7 14.3 1.0 CB B:TYR1 4.7 18.4 1.0 N B:PRO2 4.8 17.8 1.0

Iron binding site 3 out of 3 in the Cytochrome F From Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cytochrome F From Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe255 b:17.2 occ:1.00 FE C:HEM255 0.0 17.2 1.0 NB C:HEM255 1.9 18.8 1.0 NC C:HEM255 1.9 16.9 1.0 NA C:HEM255 2.0 16.5 1.0 ND C:HEM255 2.0 16.2 1.0 NE2 C:HIS25 2.7 21.8 1.0 N C:TYR1 2.7 20.5 1.0 C4C C:HEM255 3.0 18.0 1.0 C1B C:HEM255 3.0 18.4 1.0 C4B C:HEM255 3.0 18.7 1.0 C4A C:HEM255 3.0 18.1 1.0 C1C C:HEM255 3.0 18.2 1.0 C1A C:HEM255 3.0 16.3 1.0 C1D C:HEM255 3.0 16.1 1.0 C4D C:HEM255 3.1 16.4 1.0 CD2 C:HIS25 3.3 21.8 1.0 CA C:TYR1 3.4 16.0 1.0 CHB C:HEM255 3.4 17.5 1.0 CHD C:HEM255 3.4 17.9 1.0 CHC C:HEM255 3.4 18.2 1.0 CHA C:HEM255 3.4 15.6 1.0 CE1 C:HIS25 3.8 22.4 1.0 C C:TYR1 3.9 16.4 1.0 O C:TYR1 3.9 14.4 1.0 C3C C:HEM255 4.2 17.9 1.0 C3B C:HEM255 4.2 19.9 1.0 C2B C:HEM255 4.2 19.3 1.0 C3A C:HEM255 4.2 16.2 1.0 C2A C:HEM255 4.2 17.2 1.0 C2C C:HEM255 4.3 17.6 1.0 C3D C:HEM255 4.3 16.0 1.0 C2D C:HEM255 4.3 17.0 1.0 CG C:HIS25 4.6 21.3 1.0 CB C:TYR1 4.8 16.7 1.0 N C:PRO2 4.8 14.6 1.0 CD2 C:PHE4 4.8 17.2 1.0 ND1 C:HIS25 4.8 23.5 1.0 ND2 C:ASN153 5.0 17.1 1.0

Y.I.Chi, L.S.Huang, Z.Zhang, J.G.Fernandez-Velasco, E.A.Berry. X-Ray Structure of A Truncated Form of Cytochrome F From Chlamydomonas Reinhardtii. Biochemistry V. 39 7689 2000.
ISSN: ISSN 0006-2960
PubMed: 10869174
DOI: 10.1021/BI000090K