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Iron in PDB 1clf: Clostridium Pasteurianum Ferredoxin

Iron Binding Sites:

The binding sites of Iron atom in the Clostridium Pasteurianum Ferredoxin (pdb code 1clf). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Clostridium Pasteurianum Ferredoxin, PDB code: 1clf:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 1clf

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Iron binding site 1 out of 8 in the Clostridium Pasteurianum Ferredoxin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Clostridium Pasteurianum Ferredoxin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe56

b:0.0
occ:1.00
FE1 A:SF456 0.0 0.0 1.0
S2 A:SF456 2.2 0.0 1.0
S4 A:SF456 2.2 0.0 1.0
S3 A:SF456 2.2 0.0 1.0
SG A:CYS8 2.2 0.0 1.0
FE4 A:SF456 2.6 0.0 1.0
FE3 A:SF456 2.7 0.0 1.0
FE2 A:SF456 2.7 0.0 1.0
O A:VAL9 3.2 0.0 1.0
CB A:CYS8 3.4 0.0 1.0
CA A:CYS8 3.7 0.0 1.0
S1 A:SF456 3.8 0.0 1.0
CG2 A:ILE4 4.0 0.0 1.0
N A:VAL9 4.2 0.0 1.0
CB A:PHE30 4.2 0.0 1.0
C A:VAL9 4.2 0.0 1.0
C A:CYS8 4.4 0.0 1.0
CD1 A:PHE30 4.5 0.0 1.0
SG A:CYS47 4.6 0.0 1.0
SG A:CYS14 4.6 0.0 1.0
CG A:PHE30 4.6 0.0 1.0
CB A:ALA51 4.6 0.0 1.0
SG A:CYS11 4.7 0.0 1.0
N A:CYS11 4.7 0.0 1.0
CA A:VAL9 4.9 0.0 1.0
N A:PHE30 5.0 0.0 1.0
N A:CYS8 5.0 0.0 1.0

Iron binding site 2 out of 8 in 1clf

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Iron binding site 2 out of 8 in the Clostridium Pasteurianum Ferredoxin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Clostridium Pasteurianum Ferredoxin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe56

b:0.0
occ:1.00
FE2 A:SF456 0.0 0.0 1.0
SG A:CYS11 2.2 0.0 1.0
S1 A:SF456 2.2 0.0 1.0
S4 A:SF456 2.2 0.0 1.0
S3 A:SF456 2.2 0.0 1.0
FE4 A:SF456 2.6 0.0 1.0
FE3 A:SF456 2.6 0.0 1.0
FE1 A:SF456 2.7 0.0 1.0
CB A:CYS11 3.3 0.0 1.0
S2 A:SF456 3.7 0.0 1.0
O A:VAL9 3.7 0.0 1.0
CA A:CYS11 4.0 0.0 1.0
N A:CYS11 4.0 0.0 1.0
N A:GLY12 4.0 0.0 1.0
N A:ALA13 4.2 0.0 1.0
C A:CYS11 4.2 0.0 1.0
SG A:CYS47 4.5 0.0 1.0
SG A:CYS14 4.6 0.0 1.0
SG A:CYS8 4.7 0.0 1.0
CD A:PRO48 4.7 0.0 1.0
C A:ALA13 4.8 0.0 1.0
C A:GLY12 4.8 0.0 1.0
CA A:ALA13 4.9 0.0 1.0
O A:ALA13 4.9 0.0 1.0
CA A:GLY12 4.9 0.0 1.0
C A:VAL9 5.0 0.0 1.0

Iron binding site 3 out of 8 in 1clf

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Iron binding site 3 out of 8 in the Clostridium Pasteurianum Ferredoxin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Clostridium Pasteurianum Ferredoxin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe56

b:0.0
occ:1.00
FE3 A:SF456 0.0 0.0 1.0
SG A:CYS14 2.2 0.0 1.0
S1 A:SF456 2.2 0.0 1.0
S2 A:SF456 2.2 0.0 1.0
S4 A:SF456 2.2 0.0 1.0
FE2 A:SF456 2.6 0.0 1.0
FE4 A:SF456 2.6 0.0 1.0
FE1 A:SF456 2.7 0.0 1.0
CB A:CYS14 3.2 0.0 1.0
S3 A:SF456 3.8 0.0 1.0
N A:CYS14 4.2 0.0 1.0
CA A:CYS14 4.2 0.0 1.0
C A:ALA13 4.4 0.0 1.0
CB A:PHE30 4.5 0.0 1.0
SG A:CYS11 4.5 0.0 1.0
SG A:CYS47 4.6 0.0 1.0
O A:ALA13 4.6 0.0 1.0
CG A:PHE30 4.6 0.0 1.0
SG A:CYS8 4.6 0.0 1.0
N A:ALA13 4.8 0.0 1.0
CD1 A:ILE4 4.8 0.0 1.0
CB A:CYS47 4.9 0.0 1.0
C A:GLY12 5.0 0.0 1.0

Iron binding site 4 out of 8 in 1clf

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Iron binding site 4 out of 8 in the Clostridium Pasteurianum Ferredoxin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Clostridium Pasteurianum Ferredoxin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe56

b:0.0
occ:1.00
FE4 A:SF456 0.0 0.0 1.0
SG A:CYS47 2.1 0.0 1.0
S1 A:SF456 2.2 0.0 1.0
S2 A:SF456 2.2 0.0 1.0
S3 A:SF456 2.2 0.0 1.0
FE2 A:SF456 2.6 0.0 1.0
FE3 A:SF456 2.6 0.0 1.0
FE1 A:SF456 2.6 0.0 1.0
CB A:CYS47 3.2 0.0 1.0
S4 A:SF456 3.7 0.0 1.0
CA A:CYS47 3.8 0.0 1.0
CB A:ALA51 4.2 0.0 1.0
CD A:PRO48 4.3 0.0 1.0
SG A:CYS11 4.5 0.0 1.0
C A:CYS47 4.5 0.0 1.0
SG A:CYS14 4.6 0.0 1.0
N A:PRO48 4.7 0.0 1.0
SG A:CYS8 4.7 0.0 1.0
CD A:PRO52 4.7 0.0 1.0
CG2 A:VAL49 4.7 0.0 1.0
N A:ALA51 4.9 0.0 1.0
CA A:CYS8 5.0 0.0 1.0

Iron binding site 5 out of 8 in 1clf

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Iron binding site 5 out of 8 in the Clostridium Pasteurianum Ferredoxin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Clostridium Pasteurianum Ferredoxin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe57

b:0.0
occ:1.00
FE1 A:SF457 0.0 0.0 1.0
SG A:CYS37 2.2 0.0 1.0
S2 A:SF457 2.2 0.0 1.0
S4 A:SF457 2.2 0.0 1.0
S3 A:SF457 2.2 0.0 1.0
FE3 A:SF457 2.6 0.0 1.0
FE4 A:SF457 2.6 0.0 1.0
FE2 A:SF457 2.7 0.0 1.0
O A:ILE38 3.2 0.0 1.0
CB A:CYS37 3.3 0.0 1.0
S1 A:SF457 3.7 0.0 1.0
CA A:CYS37 3.8 0.0 1.0
N A:ILE38 4.0 0.0 1.0
C A:ILE38 4.1 0.0 1.0
C A:CYS37 4.3 0.0 1.0
SG A:CYS43 4.6 0.0 1.0
SG A:CYS18 4.6 0.0 1.0
SG A:CYS40 4.7 0.0 1.0
N A:CYS40 4.7 0.0 1.0
CA A:ILE38 4.8 0.0 1.0
N A:ASP39 4.9 0.0 1.0
CG2 A:ILE32 5.0 0.0 1.0

Iron binding site 6 out of 8 in 1clf

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Iron binding site 6 out of 8 in the Clostridium Pasteurianum Ferredoxin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Clostridium Pasteurianum Ferredoxin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe57

b:0.0
occ:1.00
FE2 A:SF457 0.0 0.0 1.0
SG A:CYS40 2.2 0.0 1.0
S1 A:SF457 2.2 0.0 1.0
S4 A:SF457 2.2 0.0 1.0
S3 A:SF457 2.2 0.0 1.0
FE4 A:SF457 2.6 0.0 1.0
FE3 A:SF457 2.6 0.0 1.0
FE1 A:SF457 2.7 0.0 1.0
CB A:CYS40 3.3 0.0 1.0
O A:ASN42 3.5 0.0 1.0
O A:ILE38 3.6 0.0 1.0
S2 A:SF457 3.8 0.0 1.0
N A:CYS40 3.9 0.0 1.0
CA A:CYS40 4.0 0.0 1.0
C A:ASN42 4.1 0.0 1.0
N A:GLY41 4.2 0.0 1.0
C A:CYS40 4.3 0.0 1.0
CD A:PRO19 4.3 0.0 1.0
N A:ASN42 4.4 0.0 1.0
CB A:ASN42 4.5 0.0 1.0
SG A:CYS18 4.5 0.0 1.0
CA A:ASN42 4.6 0.0 1.0
SG A:CYS43 4.6 0.0 1.0
SG A:CYS37 4.6 0.0 1.0
C A:ILE38 4.8 0.0 1.0
N A:CYS43 4.9 0.0 1.0
C A:GLY41 5.0 0.0 1.0

Iron binding site 7 out of 8 in 1clf

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Iron binding site 7 out of 8 in the Clostridium Pasteurianum Ferredoxin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Clostridium Pasteurianum Ferredoxin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe57

b:0.0
occ:1.00
FE3 A:SF457 0.0 0.0 1.0
SG A:CYS43 2.2 0.0 1.0
S1 A:SF457 2.2 0.0 1.0
S2 A:SF457 2.2 0.0 1.0
S4 A:SF457 2.2 0.0 1.0
FE1 A:SF457 2.6 0.0 1.0
FE4 A:SF457 2.6 0.0 1.0
FE2 A:SF457 2.6 0.0 1.0
O A:ASN42 3.0 0.0 1.0
CB A:CYS43 3.2 0.0 1.0
C A:ASN42 3.7 0.0 1.0
S3 A:SF457 3.8 0.0 1.0
N A:CYS43 4.1 0.0 1.0
CA A:CYS43 4.1 0.0 1.0
SG A:CYS37 4.5 0.0 1.0
SG A:CYS40 4.6 0.0 1.0
SG A:CYS18 4.6 0.0 1.0
CD1 A:ILE23 4.6 0.0 1.0
N A:ALA44 4.8 0.0 1.0
CB A:CYS18 4.8 0.0 1.0
C A:CYS43 4.9 0.0 1.0
CA A:ASN42 5.0 0.0 1.0

Iron binding site 8 out of 8 in 1clf

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Iron binding site 8 out of 8 in the Clostridium Pasteurianum Ferredoxin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Clostridium Pasteurianum Ferredoxin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe57

b:0.0
occ:1.00
FE4 A:SF457 0.0 0.0 1.0
SG A:CYS18 2.2 0.0 1.0
S1 A:SF457 2.2 0.0 1.0
S3 A:SF457 2.2 0.0 1.0
S2 A:SF457 2.2 0.0 1.0
FE2 A:SF457 2.6 0.0 1.0
FE3 A:SF457 2.6 0.0 1.0
FE1 A:SF457 2.6 0.0 1.0
CB A:CYS18 3.2 0.0 1.0
CA A:CYS18 3.7 0.0 1.0
S4 A:SF457 3.8 0.0 1.0
CD A:PRO19 4.0 0.0 1.0
CG1 A:VAL20 4.2 0.0 1.0
C A:CYS18 4.4 0.0 1.0
N A:PRO19 4.5 0.0 1.0
SG A:CYS40 4.5 0.0 1.0
SG A:CYS43 4.6 0.0 1.0
SG A:CYS37 4.6 0.0 1.0
CB A:ALA22 4.7 0.0 1.0
O A:ASN42 4.9 0.0 1.0
N A:VAL20 4.9 0.0 1.0
CB A:CYS43 5.0 0.0 1.0
N A:CYS18 5.0 0.0 1.0
CD1 A:ILE23 5.0 0.0 1.0
O A:ILE38 5.0 0.0 1.0

Reference:

I.Bertini, A.Donaire, B.A.Feinberg, C.Luchinat, M.Piccioli, H.Yuan. Solution Structure of the Oxidized 2[4FE-4S] Ferredoxin From Clostridium Pasteurianum. Eur.J.Biochem. V. 232 192 1995.
ISSN: ISSN 0014-2956
PubMed: 7556151
DOI: 10.1111/J.1432-1033.1995.TB20799.X
Page generated: Wed Jul 16 12:59:45 2025

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