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Iron in PDB 1dt0: Cloning, Sequence, and Crystallographic Structure of Recombinant Iron Superoxide Dismutase From Pseudomonas Ovalis

Enzymatic activity of Cloning, Sequence, and Crystallographic Structure of Recombinant Iron Superoxide Dismutase From Pseudomonas Ovalis

All present enzymatic activity of Cloning, Sequence, and Crystallographic Structure of Recombinant Iron Superoxide Dismutase From Pseudomonas Ovalis:
1.15.1.1;

Protein crystallography data

The structure of Cloning, Sequence, and Crystallographic Structure of Recombinant Iron Superoxide Dismutase From Pseudomonas Ovalis, PDB code: 1dt0 was solved by C.J.Bond, J.Huang, R.Hajduk, K.Flick, P.Heath, B.L.Stoddard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.10
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 115.030, 115.030, 82.500, 90.00, 90.00, 120.00
R / Rfree (%) 22 / 29

Iron Binding Sites:

The binding sites of Iron atom in the Cloning, Sequence, and Crystallographic Structure of Recombinant Iron Superoxide Dismutase From Pseudomonas Ovalis (pdb code 1dt0). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 3 binding sites of Iron where determined in the Cloning, Sequence, and Crystallographic Structure of Recombinant Iron Superoxide Dismutase From Pseudomonas Ovalis, PDB code: 1dt0:
Jump to Iron binding site number: 1; 2; 3;

Iron binding site 1 out of 3 in 1dt0

Go back to Iron Binding Sites List in 1dt0
Iron binding site 1 out of 3 in the Cloning, Sequence, and Crystallographic Structure of Recombinant Iron Superoxide Dismutase From Pseudomonas Ovalis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cloning, Sequence, and Crystallographic Structure of Recombinant Iron Superoxide Dismutase From Pseudomonas Ovalis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1601

b:24.5
occ:1.02
 OD2 A:ASP156 1.9 10.7 1.0
O A:HOH1769 2.0 11.4 1.0
NE2 A:HIS73 2.1 26.2 1.0
NE2 A:HIS26 2.1 4.4 1.0
NE2 A:HIS160 2.4 27.1 1.0
CE1 A:HIS73 2.9 22.4 1.0
CE1 A:HIS26 3.0 7.0 1.0
CG A:ASP156 3.0 15.7 1.0
CD2 A:HIS73 3.1 16.0 1.0
CD2 A:HIS26 3.1 5.0 1.0
CD2 A:HIS160 3.3 23.0 1.0
CE1 A:HIS160 3.3 20.6 1.0
OD1 A:ASP156 3.5 20.8 1.0
CH2 A:TRP122 3.9 11.9 1.0
ND1 A:HIS73 4.0 19.9 1.0
ND1 A:HIS26 4.1 4.7 1.0
CZ2 A:TRP122 4.2 6.9 1.0
CG A:HIS73 4.2 21.0 1.0
CG A:HIS26 4.2 2.0 1.0
CB A:ASP156 4.2 16.8 1.0
CB A:TRP158 4.4 16.0 1.0
ND1 A:HIS160 4.4 22.2 1.0
CG A:HIS160 4.5 20.7 1.0
CG A:TRP158 4.6 17.1 1.0
NE2 A:GLN69 4.8 12.6 1.0
CZ3 A:TRP122 4.8 10.2 1.0
CB A:ALA161 4.9 20.5 1.0
CD1 A:TRP158 5.0 14.6 1.0

Iron binding site 2 out of 3 in 1dt0

Go back to Iron Binding Sites List in 1dt0
Iron binding site 2 out of 3 in the Cloning, Sequence, and Crystallographic Structure of Recombinant Iron Superoxide Dismutase From Pseudomonas Ovalis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cloning, Sequence, and Crystallographic Structure of Recombinant Iron Superoxide Dismutase From Pseudomonas Ovalis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe1602

b:31.3
occ:1.02
 O B:HOH793 1.2 31.3 1.0
NE2 B:HIS73 1.8 23.7 1.0
NE2 B:HIS26 2.3 4.4 1.0
NE2 B:HIS160 2.3 33.9 1.0
OD2 B:ASP156 2.4 20.6 1.0
CE1 B:HIS73 2.7 26.8 1.0
CD2 B:HIS73 2.9 26.0 1.0
CE1 B:HIS26 3.2 2.0 1.0
CE1 B:HIS160 3.2 28.8 1.0
CD2 B:HIS26 3.2 3.5 1.0
CG B:ASP156 3.3 22.6 1.0
CD2 B:HIS160 3.4 33.5 1.0
OD1 B:ASP156 3.8 20.9 1.0
ND1 B:HIS73 3.8 21.2 1.0
CG B:HIS73 3.9 29.2 1.0
CH2 B:TRP122 4.2 24.2 1.0
ND1 B:HIS26 4.3 3.6 1.0
CZ2 B:TRP122 4.3 24.0 1.0
CG B:HIS26 4.3 2.0 1.0
ND1 B:HIS160 4.4 27.7 1.0
CB B:ASP156 4.4 19.5 1.0
CB B:TRP158 4.5 14.7 1.0
CG B:HIS160 4.5 23.8 1.0
NE2 B:GLN69 4.6 20.3 1.0
CG B:TRP158 4.7 10.5 1.0

Iron binding site 3 out of 3 in 1dt0

Go back to Iron Binding Sites List in 1dt0
Iron binding site 3 out of 3 in the Cloning, Sequence, and Crystallographic Structure of Recombinant Iron Superoxide Dismutase From Pseudomonas Ovalis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cloning, Sequence, and Crystallographic Structure of Recombinant Iron Superoxide Dismutase From Pseudomonas Ovalis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe1603

b:34.5
occ:1.02
 NE2 C:HIS73 1.9 9.3 1.0
OD2 C:ASP156 2.1 38.5 1.0
NE2 C:HIS26 2.3 23.6 1.0
NE2 C:HIS160 2.4 27.8 1.0
CE1 C:HIS73 2.5 6.1 1.0
CD2 C:HIS73 3.1 9.6 1.0
CE1 C:HIS26 3.2 27.4 1.0
CG C:ASP156 3.2 32.0 1.0
CE1 C:HIS160 3.3 27.3 1.0
CD2 C:HIS26 3.3 30.1 1.0
CD2 C:HIS160 3.4 26.4 1.0
OD1 C:ASP156 3.7 29.2 1.0
ND1 C:HIS73 3.7 10.3 1.0
CG C:HIS73 4.0 9.3 1.0
CH2 C:TRP122 4.2 27.3 1.0
CZ2 C:TRP122 4.3 24.1 1.0
CB C:TRP158 4.3 26.0 1.0
ND1 C:HIS26 4.3 21.7 1.0
CG C:HIS26 4.4 24.4 1.0
ND1 C:HIS160 4.4 24.7 1.0
CB C:ASP156 4.4 28.8 1.0
CG C:TRP158 4.5 36.3 1.0
CG C:HIS160 4.5 18.5 1.0
O C:HOH1604 4.8 74.0 1.0
NE2 C:GLN69 4.8 40.6 1.0
CD1 C:TRP158 4.9 36.9 1.0
CD2 C:TRP158 5.0 38.4 1.0

Reference:

C.J.Bond, J.Huang, R.Hajduk, K.E.Flick, P.J.Heath, B.L.Stoddard. Cloning, Sequence and Crystallographic Structure of Recombinant Iron Superoxide Dismutase From Pseudomonas Ovalis. Acta Crystallogr.,Sect.D V. 56 1359 2000.
ISSN: ISSN 0907-4449
PubMed: 11053832
DOI: 10.1107/S0907444900009537
Page generated: Sat Aug 3 03:58:30 2024

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