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Iron in PDB 1dve: Crystal Structure of Rat Heme Oxygenase-1 in Complex with Heme

Enzymatic activity of Crystal Structure of Rat Heme Oxygenase-1 in Complex with Heme

All present enzymatic activity of Crystal Structure of Rat Heme Oxygenase-1 in Complex with Heme:
1.14.99.3;

Protein crystallography data

The structure of Crystal Structure of Rat Heme Oxygenase-1 in Complex with Heme, PDB code: 1dve was solved by M.Sugishima, Y.Omata, Y.Kakuta, H.Sakamoto, M.Noguchi, K.Fukuyama, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.75 / 2.40
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 56.139, 56.139, 183.984, 90.00, 90.00, 90.00
R / Rfree (%) 21.4 / 26.8

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Rat Heme Oxygenase-1 in Complex with Heme (pdb code 1dve). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Rat Heme Oxygenase-1 in Complex with Heme, PDB code: 1dve:

Iron binding site 1 out of 1 in 1dve

Go back to Iron Binding Sites List in 1dve
Iron binding site 1 out of 1 in the Crystal Structure of Rat Heme Oxygenase-1 in Complex with Heme


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Rat Heme Oxygenase-1 in Complex with Heme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe300

b:31.7
occ:1.00
FE A:HEM300 0.0 31.7 1.0
NB A:HEM300 1.9 34.7 1.0
NC A:HEM300 2.0 28.8 1.0
NA A:HEM300 2.1 33.2 1.0
ND A:HEM300 2.1 30.0 1.0
O A:HOH360 2.2 48.7 1.0
NE2 A:HIS25 2.3 33.9 1.0
C4B A:HEM300 3.0 33.7 1.0
C1B A:HEM300 3.0 35.1 1.0
C1C A:HEM300 3.0 30.8 1.0
C4C A:HEM300 3.0 30.1 1.0
C4A A:HEM300 3.1 34.8 1.0
CD2 A:HIS25 3.1 32.1 1.0
C1D A:HEM300 3.1 30.3 1.0
C1A A:HEM300 3.1 33.9 1.0
C4D A:HEM300 3.1 30.5 1.0
CHC A:HEM300 3.3 31.9 1.0
CE1 A:HIS25 3.4 32.9 1.0
CHB A:HEM300 3.4 35.6 1.0
CHD A:HEM300 3.4 29.5 1.0
CHA A:HEM300 3.5 31.5 1.0
C3B A:HEM300 4.2 35.3 1.0
C2B A:HEM300 4.2 35.6 1.0
C3C A:HEM300 4.3 29.7 1.0
C2C A:HEM300 4.3 30.2 1.0
CG A:HIS25 4.3 33.1 1.0
N A:GLY143 4.3 29.3 1.0
C3A A:HEM300 4.3 34.6 1.0
C2D A:HEM300 4.4 30.9 1.0
C3D A:HEM300 4.4 30.2 1.0
C2A A:HEM300 4.4 35.1 1.0
ND1 A:HIS25 4.4 33.9 1.0
CB A:SER142 4.6 28.0 1.0
CA A:GLY139 4.6 28.7 1.0
CA A:GLY143 4.6 29.6 1.0

Reference:

M.Sugishima, Y.Omata, Y.Kakuta, H.Sakamoto, M.Noguchi, K.Fukuyama. Crystal Structure of Rat Heme Oxygenase-1 in Complex with Heme. Febs Lett. V. 471 61 2000.
ISSN: ISSN 0014-5793
PubMed: 10760513
DOI: 10.1016/S0014-5793(00)01353-3
Page generated: Wed Jul 16 13:26:55 2025

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