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Iron in PDB 1dvh: Structure and Dynamics of Ferrocytochrome C553 From Desulfovibrio Vulgaris Studied By uc(Nmr) Spectroscopy and Restrained Molecular Dynamics

Iron Binding Sites:

The binding sites of Iron atom in the Structure and Dynamics of Ferrocytochrome C553 From Desulfovibrio Vulgaris Studied By uc(Nmr) Spectroscopy and Restrained Molecular Dynamics (pdb code 1dvh). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Structure and Dynamics of Ferrocytochrome C553 From Desulfovibrio Vulgaris Studied By uc(Nmr) Spectroscopy and Restrained Molecular Dynamics, PDB code: 1dvh:

Iron binding site 1 out of 1 in 1dvh

Go back to Iron Binding Sites List in 1dvh
Iron binding site 1 out of 1 in the Structure and Dynamics of Ferrocytochrome C553 From Desulfovibrio Vulgaris Studied By uc(Nmr) Spectroscopy and Restrained Molecular Dynamics


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure and Dynamics of Ferrocytochrome C553 From Desulfovibrio Vulgaris Studied By uc(Nmr) Spectroscopy and Restrained Molecular Dynamics within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe80

b:6.4
occ:1.00
FE A:HEM80 0.0 6.4 1.0
ND A:HEM80 2.0 4.3 1.0
NB A:HEM80 2.0 4.5 1.0
NE2 A:HIS14 2.0 0.0 1.0
NC A:HEM80 2.0 3.6 1.0
NA A:HEM80 2.0 6.2 1.0
SD A:MET57 2.4 0.0 1.0
C4D A:HEM80 3.0 9.1 1.0
C1A A:HEM80 3.0 6.2 1.0
C4B A:HEM80 3.0 4.5 1.0
CD2 A:HIS14 3.0 0.0 1.0
C1C A:HEM80 3.0 4.5 1.0
C1B A:HEM80 3.1 10.9 1.0
CE1 A:HIS14 3.1 0.0 1.0
C4C A:HEM80 3.1 11.1 1.0
C1D A:HEM80 3.1 5.0 1.0
C4A A:HEM80 3.1 9.9 1.0
CHA A:HEM80 3.4 5.5 1.0
CHC A:HEM80 3.4 6.0 1.0
CHB A:HEM80 3.4 7.9 1.0
CHD A:HEM80 3.5 10.5 1.0
CE A:MET57 3.6 0.0 1.0
CG A:MET57 3.6 0.0 1.0
ND1 A:HIS14 4.2 0.0 1.0
CG A:HIS14 4.2 0.0 1.0
C3D A:HEM80 4.3 5.1 1.0
C2B A:HEM80 4.3 5.9 1.0
C3B A:HEM80 4.3 -0.1 1.0
C2A A:HEM80 4.3 8.3 1.0
C2C A:HEM80 4.3 5.8 1.0
C3C A:HEM80 4.3 8.4 1.0
C2D A:HEM80 4.3 4.0 1.0
C3A A:HEM80 4.3 7.1 1.0
OH A:TYR7 4.7 0.0 1.0
CB A:MET57 5.0 0.0 1.0

Reference:

M.J.Blackledge, S.Medvedeva, M.Poncin, F.Guerlesquin, M.Bruschi, D.Marion. Structure and Dynamics of Ferrocytochrome C553 From Desulfovibrio Vulgaris Studied By uc(Nmr) Spectroscopy and Restrained Molecular Dynamics. J.Mol.Biol. V. 245 661 1995.
ISSN: ISSN 0022-2836
PubMed: 7844834
DOI: 10.1006/JMBI.1994.0054
Page generated: Wed Jul 16 13:27:28 2025

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