Atomistry » Iron » PDB 1ds1-1dxr » 1dxg
Atomistry »
  Iron »
    PDB 1ds1-1dxr »
      1dxg »

Iron in PDB 1dxg: Crystal Structure of Desulforedoxin From Desulfovibrio Gigas at 1.8 A Resolution

Protein crystallography data

The structure of Crystal Structure of Desulforedoxin From Desulfovibrio Gigas at 1.8 A Resolution, PDB code: 1dxg was solved by M.Archer, R.Huber, M.J.Romao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 1.80
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 42.180, 42.180, 72.220, 90.00, 90.00, 120.00
R / Rfree (%) 16.9 / 18.7

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Desulforedoxin From Desulfovibrio Gigas at 1.8 A Resolution (pdb code 1dxg). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Desulforedoxin From Desulfovibrio Gigas at 1.8 A Resolution, PDB code: 1dxg:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 1dxg

Go back to Iron Binding Sites List in 1dxg
Iron binding site 1 out of 2 in the Crystal Structure of Desulforedoxin From Desulfovibrio Gigas at 1.8 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Desulforedoxin From Desulfovibrio Gigas at 1.8 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe37

b:10.6
occ:1.00
SG A:CYS12 2.3 9.7 1.0
SG A:CYS9 2.3 9.3 1.0
SG A:CYS29 2.3 10.4 1.0
SG A:CYS28 2.3 9.7 1.0
CB A:CYS9 3.2 9.4 1.0
CB A:CYS12 3.3 9.6 1.0
CB A:CYS29 3.3 10.1 1.0
CB A:CYS28 3.3 9.7 1.0
C A:CYS28 3.6 9.8 1.0
N A:CYS29 3.7 10.2 1.0
N A:CYS12 3.8 9.3 1.0
CA B:GLY24 4.0 10.7 1.0
O A:CYS28 4.0 9.7 1.0
CA A:CYS29 4.1 10.6 1.0
CA A:CYS28 4.1 9.8 1.0
CA A:CYS12 4.1 9.6 1.0
N B:GLY24 4.3 11.6 1.0
CA A:CYS9 4.6 9.4 1.0
C A:CYS12 4.8 9.5 1.0
O A:HOH123 4.8 10.8 1.0
C A:LEU11 4.8 9.5 1.0
C B:GLY24 4.9 10.7 1.0
NE2 A:GLN14 4.9 11.9 1.0
CB A:LEU11 4.9 9.6 1.0
CB A:GLN14 4.9 10.3 1.0

Iron binding site 2 out of 2 in 1dxg

Go back to Iron Binding Sites List in 1dxg
Iron binding site 2 out of 2 in the Crystal Structure of Desulforedoxin From Desulfovibrio Gigas at 1.8 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Desulforedoxin From Desulfovibrio Gigas at 1.8 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe37

b:11.3
occ:1.00
SG B:CYS29 2.3 10.9 1.0
SG B:CYS9 2.3 10.1 1.0
SG B:CYS28 2.3 9.9 1.0
SG B:CYS12 2.3 10.3 1.0
CB B:CYS9 3.2 9.9 1.0
CB B:CYS29 3.3 10.9 1.0
CB B:CYS12 3.3 10.0 1.0
CB B:CYS28 3.4 9.9 1.0
N B:CYS29 3.6 10.7 1.0
C B:CYS28 3.7 10.2 1.0
N B:CYS12 3.9 9.9 1.0
CA A:GLY24 3.9 11.1 1.0
CA B:CYS29 4.0 11.3 1.0
O B:CYS28 4.0 10.0 1.0
CA B:CYS28 4.1 9.9 1.0
CA B:CYS12 4.2 9.9 1.0
N A:GLY24 4.4 11.5 1.0
CA B:CYS9 4.6 9.7 1.0
C A:GLY24 4.8 10.9 1.0
CB B:GLN14 4.8 10.6 1.0
C B:CYS12 4.8 9.8 1.0
CB B:LEU11 4.9 10.2 1.0
O B:HOH103 4.9 9.0 1.0
C B:LEU11 5.0 10.2 1.0

Reference:

M.Archer, R.Huber, P.Tavares, I.Moura, J.J.Moura, M.A.Carrondo, L.C.Sieker, J.Legall, M.J.Romao. Crystal Structure of Desulforedoxin From Desulfovibrio Gigas Determined at 1.8 A Resolution: A Novel Non-Heme Iron Protein Structure. J.Mol.Biol. V. 251 690 1995.
ISSN: ISSN 0022-2836
PubMed: 7666420
DOI: 10.1006/JMBI.1995.0465
Page generated: Wed Jul 16 13:30:42 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy