Iron in PDB 1gcv: Deoxy Form Hemoglobin From Mustelus Griseus

The structure of Deoxy Form Hemoglobin From Mustelus Griseus, PDB code: 1gcv was solved by Y.Naoi, K.T.Chong, K.Yoshimatsu, G.Miyazaki, J.R.H.Tame, S.Y.Park, S.I.Adachi, H.Morimoto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	57.680, 90.550, 61.450, 90.00, 98.45, 90.00
R / Rfree (%)	18.1 / 22.3

The binding sites of Iron atom in the Deoxy Form Hemoglobin From Mustelus Griseus (pdb code 1gcv). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Deoxy Form Hemoglobin From Mustelus Griseus, PDB code: 1gcv:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Deoxy Form Hemoglobin From Mustelus Griseus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Deoxy Form Hemoglobin From Mustelus Griseus within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe141 b:20.3 occ:1.00 FE A:HEM141 0.0 20.3 1.0 NB A:HEM141 2.0 18.0 1.0 ND A:HEM141 2.0 20.4 1.0 NA A:HEM141 2.0 19.7 1.0 NC A:HEM141 2.0 17.8 1.0 NE2 A:HIS87 2.2 16.2 1.0 CE1 A:HIS87 3.0 14.9 1.0 C4B A:HEM141 3.1 17.8 1.0 C4D A:HEM141 3.1 21.2 1.0 C1A A:HEM141 3.1 19.9 1.0 C1B A:HEM141 3.1 18.5 1.0 C1D A:HEM141 3.1 19.4 1.0 C1C A:HEM141 3.1 13.8 1.0 C4C A:HEM141 3.1 15.8 1.0 C4A A:HEM141 3.1 19.1 1.0 CD2 A:HIS87 3.3 13.9 1.0 CHA A:HEM141 3.5 20.9 1.0 CHC A:HEM141 3.5 14.2 1.0 CHD A:HEM141 3.5 17.8 1.0 CHB A:HEM141 3.5 17.9 1.0 NE2 A:HIS58 4.2 30.2 1.0 ND1 A:HIS87 4.2 16.0 1.0 C3D A:HEM141 4.3 22.6 1.0 C2A A:HEM141 4.3 20.9 1.0 CG A:HIS87 4.3 13.9 1.0 C2B A:HEM141 4.3 19.3 1.0 C3B A:HEM141 4.3 20.9 1.0 C2D A:HEM141 4.3 19.4 1.0 C3C A:HEM141 4.3 16.8 1.0 C3A A:HEM141 4.3 20.1 1.0 C2C A:HEM141 4.3 16.0 1.0 CE1 A:HIS58 4.6 28.0 1.0 CG2 A:VAL62 4.8 16.7 1.0 CD1 A:LEU91 4.8 15.1 1.0

Iron binding site 2 out of 4 in the Deoxy Form Hemoglobin From Mustelus Griseus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Deoxy Form Hemoglobin From Mustelus Griseus within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe137 b:21.8 occ:1.00 FE B:HEM137 0.0 21.8 1.0 NA B:HEM137 2.0 24.6 1.0 ND B:HEM137 2.0 25.6 1.0 NB B:HEM137 2.0 21.3 1.0 NC B:HEM137 2.0 22.7 1.0 NE2 B:HIS82 2.2 18.4 1.0 C4D B:HEM137 3.1 28.4 1.0 C1A B:HEM137 3.1 24.8 1.0 C1D B:HEM137 3.1 23.9 1.0 C4B B:HEM137 3.1 20.2 1.0 C4A B:HEM137 3.1 23.5 1.0 C1C B:HEM137 3.1 23.1 1.0 C4C B:HEM137 3.1 21.6 1.0 C1B B:HEM137 3.1 21.2 1.0 CE1 B:HIS82 3.1 17.1 1.0 CD2 B:HIS82 3.3 17.0 1.0 CHC B:HEM137 3.4 19.2 1.0 CHA B:HEM137 3.4 27.5 1.0 CHD B:HEM137 3.5 22.4 1.0 CHB B:HEM137 3.5 19.8 1.0 C2A B:HEM137 4.3 27.7 1.0 NE2 B:HIS53 4.3 30.6 1.0 C3A B:HEM137 4.3 26.7 1.0 C3D B:HEM137 4.3 30.1 1.0 C2D B:HEM137 4.3 26.9 1.0 C2B B:HEM137 4.3 23.1 1.0 C3B B:HEM137 4.3 23.1 1.0 C3C B:HEM137 4.3 22.9 1.0 C2C B:HEM137 4.3 19.4 1.0 ND1 B:HIS82 4.4 19.1 1.0 CG B:HIS82 4.4 18.0 1.0 CE1 B:HIS53 4.5 29.2 1.0 CG2 B:VAL57 5.0 20.7 1.0

Iron binding site 3 out of 4 in the Deoxy Form Hemoglobin From Mustelus Griseus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Deoxy Form Hemoglobin From Mustelus Griseus within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe141 b:19.3 occ:1.00 FE C:HEM141 0.0 19.3 1.0 NA C:HEM141 2.0 21.9 1.0 ND C:HEM141 2.0 20.6 1.0 NB C:HEM141 2.0 19.5 1.0 NC C:HEM141 2.1 19.9 1.0 NE2 C:HIS87 2.3 20.5 1.0 C1A C:HEM141 3.1 21.9 1.0 C4D C:HEM141 3.1 20.5 1.0 C4B C:HEM141 3.1 17.9 1.0 C1B C:HEM141 3.1 19.4 1.0 C4A C:HEM141 3.1 21.9 1.0 C1C C:HEM141 3.1 19.8 1.0 C1D C:HEM141 3.1 22.4 1.0 C4C C:HEM141 3.2 17.8 1.0 CE1 C:HIS87 3.2 19.4 1.0 CD2 C:HIS87 3.3 17.1 1.0 CHA C:HEM141 3.5 19.4 1.0 CHC C:HEM141 3.5 18.8 1.0 CHB C:HEM141 3.5 19.9 1.0 CHD C:HEM141 3.6 19.0 1.0 NE2 C:HIS58 4.2 24.1 1.0 C2B C:HEM141 4.3 20.1 1.0 C2A C:HEM141 4.3 24.4 1.0 C3A C:HEM141 4.3 23.2 1.0 C3D C:HEM141 4.3 23.4 1.0 C3B C:HEM141 4.3 17.6 1.0 C2D C:HEM141 4.4 21.2 1.0 C2C C:HEM141 4.4 19.1 1.0 CE1 C:HIS58 4.4 21.7 1.0 ND1 C:HIS87 4.4 19.6 1.0 C3C C:HEM141 4.4 19.4 1.0 CG C:HIS87 4.5 18.6 1.0 CG2 C:VAL62 4.7 17.1 1.0 CD1 C:LEU91 5.0 16.8 1.0

Iron binding site 4 out of 4 in the Deoxy Form Hemoglobin From Mustelus Griseus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Deoxy Form Hemoglobin From Mustelus Griseus within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe137 b:20.7 occ:1.00 FE D:HEM137 0.0 20.7 1.0 NC D:HEM137 2.0 17.8 1.0 ND D:HEM137 2.0 19.7 1.0 NA D:HEM137 2.0 21.3 1.0 NB D:HEM137 2.0 20.5 1.0 NE2 D:HIS82 2.2 18.8 1.0 C4C D:HEM137 3.0 17.7 1.0 C1D D:HEM137 3.0 18.7 1.0 C1C D:HEM137 3.0 16.6 1.0 C1A D:HEM137 3.1 22.4 1.0 C4D D:HEM137 3.1 20.7 1.0 C4B D:HEM137 3.1 20.0 1.0 C4A D:HEM137 3.1 21.7 1.0 C1B D:HEM137 3.1 21.5 1.0 CE1 D:HIS82 3.1 15.2 1.0 CD2 D:HIS82 3.2 15.8 1.0 CHD D:HEM137 3.4 19.8 1.0 CHC D:HEM137 3.5 18.3 1.0 CHA D:HEM137 3.5 21.9 1.0 CHB D:HEM137 3.5 20.1 1.0 C2D D:HEM137 4.3 20.2 1.0 C2C D:HEM137 4.3 19.1 1.0 C3C D:HEM137 4.3 20.9 1.0 C2A D:HEM137 4.3 22.9 1.0 ND1 D:HIS82 4.3 17.0 1.0 C3D D:HEM137 4.3 22.2 1.0 CG D:HIS82 4.3 15.4 1.0 C3A D:HEM137 4.3 24.7 1.0 C3B D:HEM137 4.3 22.7 1.0 C2B D:HEM137 4.3 19.9 1.0 NE2 D:HIS53 4.5 36.6 1.0 CE1 D:HIS53 4.6 35.5 1.0 CG2 D:VAL57 5.0 18.2 1.0

Y.Naoi, K.T.Chong, K.Yoshimatsu, G.Miyazaki, J.R.Tame, S.Y.Park, S.Adachi, H.Morimoto. The Functional Similarity and Structural Diversity of Human and Cartilaginous Fish Hemoglobins. J.Mol.Biol. V. 307 259 2001.
ISSN: ISSN 0022-2836
PubMed: 11243818
DOI: 10.1006/JMBI.2000.4446