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Iron in PDB 1gdl: Crystal Structure of Ferric Complexes of the Yellow Lupin Leghemoglobin with Isoquinoline at 1.8 Angstroms Resolution (Russian)

Protein crystallography data

The structure of Crystal Structure of Ferric Complexes of the Yellow Lupin Leghemoglobin with Isoquinoline at 1.8 Angstroms Resolution (Russian), PDB code: 1gdl was solved by E.Harutyunyan, T.Safonova, I.Kuranova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 1.80
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 93.470, 51.980, 38.320, 90.00, 98.80, 90.00
R / Rfree (%) n/a / n/a

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Ferric Complexes of the Yellow Lupin Leghemoglobin with Isoquinoline at 1.8 Angstroms Resolution (Russian) (pdb code 1gdl). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Ferric Complexes of the Yellow Lupin Leghemoglobin with Isoquinoline at 1.8 Angstroms Resolution (Russian), PDB code: 1gdl:

Iron binding site 1 out of 1 in 1gdl

Go back to Iron Binding Sites List in 1gdl
Iron binding site 1 out of 1 in the Crystal Structure of Ferric Complexes of the Yellow Lupin Leghemoglobin with Isoquinoline at 1.8 Angstroms Resolution (Russian)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Ferric Complexes of the Yellow Lupin Leghemoglobin with Isoquinoline at 1.8 Angstroms Resolution (Russian) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe154

b:14.2
occ:1.00
FE A:HEM154 0.0 14.2 1.0
NA A:HEM154 1.8 12.4 1.0
N A:NO155 2.0 4.0 1.0
NB A:HEM154 2.0 9.6 1.0
NC A:HEM154 2.1 8.4 1.0
ND A:HEM154 2.1 11.2 1.0
NE2 A:HIS97 2.2 11.2 1.0
C4A A:HEM154 2.8 14.2 1.0
C1A A:HEM154 2.9 12.4 1.0
C1B A:HEM154 3.0 8.3 1.0
CE1 A:HIS97 3.0 16.3 1.0
C4D A:HEM154 3.1 6.3 1.0
C4B A:HEM154 3.1 3.5 1.0
C4C A:HEM154 3.1 8.0 1.0
C1C A:HEM154 3.1 1.5 1.0
C1D A:HEM154 3.2 7.6 1.0
O A:NO155 3.2 20.4 1.0
CD2 A:HIS97 3.3 10.2 1.0
CHB A:HEM154 3.3 10.8 1.0
CHA A:HEM154 3.4 10.3 1.0
CHC A:HEM154 3.5 6.6 1.0
CHD A:HEM154 3.5 7.7 1.0
C2A A:HEM154 4.0 12.2 1.0
C3A A:HEM154 4.1 13.0 1.0
CE1 A:HIS63 4.1 6.4 1.0
ND1 A:HIS97 4.2 15.8 1.0
C2B A:HEM154 4.2 9.1 1.0
C3B A:HEM154 4.3 4.2 1.0
C3D A:HEM154 4.3 11.0 1.0
C2C A:HEM154 4.3 2.6 1.0
CG A:HIS97 4.3 10.1 1.0
C3C A:HEM154 4.4 1.8 1.0
C2D A:HEM154 4.4 10.6 1.0
NE2 A:HIS63 4.7 8.6 1.0
CG2 A:VAL67 4.9 14.5 1.0

Reference:

E.H.Harutyunyan, T.N.Safonova, I.P.Kuranova, A.N.Popov, A.V.Teplyakov, G.V.Obmolova, B.K.Valnshtein, G.G.Dodson, J.C.Wilson. The Binding of Carbon Monoxide and Nitric Oxide to Leghaemoglobin in Comparison with Other Haemoglobins. J.Mol.Biol. V. 264 152 1996.
ISSN: ISSN 0022-2836
PubMed: 8950274
DOI: 10.1006/JMBI.1996.0630
Page generated: Wed Jul 16 14:56:02 2025

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