Atomistry » Iron » PDB 1hzu-1ird » 1io8
Atomistry »
  Iron »
    PDB 1hzu-1ird »
      1io8 »

Iron in PDB 1io8: Thermophilic Cytochrome P450 (CYP119) From Sulfolobus Solfataricus: High Resolution Structural Origin of Its Thermostability and Functional Properties

Protein crystallography data

The structure of Thermophilic Cytochrome P450 (CYP119) From Sulfolobus Solfataricus: High Resolution Structural Origin of Its Thermostability and Functional Properties, PDB code: 1io8 was solved by S.-Y.Park, K.Yamane, S.Adachi, Y.Shiro, S.G.Sligar, Rikenstructural Genomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.00
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 85.522, 85.522, 221.462, 90.00, 90.00, 90.00
R / Rfree (%) 23 / 30.7

Iron Binding Sites:

The binding sites of Iron atom in the Thermophilic Cytochrome P450 (CYP119) From Sulfolobus Solfataricus: High Resolution Structural Origin of Its Thermostability and Functional Properties (pdb code 1io8). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Thermophilic Cytochrome P450 (CYP119) From Sulfolobus Solfataricus: High Resolution Structural Origin of Its Thermostability and Functional Properties, PDB code: 1io8:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 1io8

Go back to Iron Binding Sites List in 1io8
Iron binding site 1 out of 2 in the Thermophilic Cytochrome P450 (CYP119) From Sulfolobus Solfataricus: High Resolution Structural Origin of Its Thermostability and Functional Properties


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Thermophilic Cytochrome P450 (CYP119) From Sulfolobus Solfataricus: High Resolution Structural Origin of Its Thermostability and Functional Properties within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:21.4
occ:1.00
FE A:HEM401 0.0 21.4 1.0
NC A:HEM401 2.0 21.8 1.0
NA A:HEM401 2.0 18.4 1.0
ND A:HEM401 2.0 26.6 1.0
NB A:HEM401 2.1 26.4 1.0
O A:HOH402 2.1 18.2 1.0
SG A:CYS317 2.1 25.9 1.0
C4C A:HEM401 3.0 28.3 1.0
C1A A:HEM401 3.0 22.8 1.0
C4A A:HEM401 3.0 23.8 1.0
C1C A:HEM401 3.1 26.0 1.0
C1D A:HEM401 3.1 22.3 1.0
C4D A:HEM401 3.1 26.3 1.0
C1B A:HEM401 3.1 21.7 1.0
C4B A:HEM401 3.1 23.9 1.0
CHD A:HEM401 3.4 19.4 1.0
CB A:CYS317 3.4 18.7 1.0
CHB A:HEM401 3.5 21.3 1.0
CHA A:HEM401 3.5 21.7 1.0
CHC A:HEM401 3.5 24.0 1.0
O A:HOH424 3.9 25.0 1.0
CA A:CYS317 4.2 18.7 1.0
C2A A:HEM401 4.3 21.0 1.0
C3C A:HEM401 4.3 27.2 1.0
C3A A:HEM401 4.3 20.6 1.0
C2C A:HEM401 4.3 22.2 1.0
C2D A:HEM401 4.3 28.1 1.0
C3B A:HEM401 4.4 26.7 1.0
C3D A:HEM401 4.4 22.6 1.0
C2B A:HEM401 4.4 26.9 1.0
O A:ALA209 4.5 29.1 1.0
C A:CYS317 4.8 22.1 1.0
N A:LEU318 4.9 21.6 1.0
N A:GLY319 4.9 23.2 1.0

Iron binding site 2 out of 2 in 1io8

Go back to Iron Binding Sites List in 1io8
Iron binding site 2 out of 2 in the Thermophilic Cytochrome P450 (CYP119) From Sulfolobus Solfataricus: High Resolution Structural Origin of Its Thermostability and Functional Properties


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Thermophilic Cytochrome P450 (CYP119) From Sulfolobus Solfataricus: High Resolution Structural Origin of Its Thermostability and Functional Properties within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe901

b:19.9
occ:1.00
FE B:HEM901 0.0 19.9 1.0
O B:HOH902 1.8 20.4 1.0
NC B:HEM901 2.0 26.8 1.0
NB B:HEM901 2.0 26.2 1.0
NA B:HEM901 2.0 22.5 1.0
ND B:HEM901 2.0 29.4 1.0
SG B:CYS817 2.2 15.7 1.0
C4C B:HEM901 3.0 26.0 1.0
C4B B:HEM901 3.1 27.5 1.0
C1C B:HEM901 3.1 27.4 1.0
C1D B:HEM901 3.1 24.2 1.0
C1A B:HEM901 3.1 25.3 1.0
C1B B:HEM901 3.1 25.1 1.0
C4A B:HEM901 3.1 21.0 1.0
C4D B:HEM901 3.1 23.6 1.0
CB B:CYS817 3.4 16.5 1.0
CHD B:HEM901 3.4 24.1 1.0
CHC B:HEM901 3.5 29.4 1.0
CHB B:HEM901 3.5 22.1 1.0
CHA B:HEM901 3.5 24.8 1.0
CA B:CYS817 4.1 21.7 1.0
O B:ALA709 4.3 26.1 1.0
C3C B:HEM901 4.3 29.7 1.0
C2A B:HEM901 4.3 22.8 1.0
C2C B:HEM901 4.3 22.5 1.0
C3B B:HEM901 4.3 24.9 1.0
C2D B:HEM901 4.3 27.2 1.0
C3A B:HEM901 4.3 22.6 1.0
C2B B:HEM901 4.4 23.6 1.0
C3D B:HEM901 4.4 22.9 1.0
O B:HOH225 4.5 43.8 1.0
N B:GLY819 4.7 26.8 1.0
N B:LEU818 4.7 28.0 1.0
C B:CYS817 4.8 22.4 1.0

Reference:

S.Y.Park, K.Yamane, S.Adachi, Y.Shiro, K.E.Weiss, S.A.Maves, S.G.Sligar. Thermophilic Cytochrome P450 (CYP119) From Sulfolobus Solfataricus: High Resolution Structure and Functional Properties J.Inorg.Biochem. V. 91 491 2002.
ISSN: ISSN 0162-0134
PubMed: 12237217
DOI: 10.1107/S0907444900008234
Page generated: Wed Jul 16 16:16:23 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy