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Iron in PDB 1ird: Crystal Structure of Human Carbonmonoxy-Haemoglobin at 1.25 A Resolution

Protein crystallography data

The structure of Crystal Structure of Human Carbonmonoxy-Haemoglobin at 1.25 A Resolution, PDB code: 1ird was solved by S.-Y.Park, J.R.H.Tame, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.25
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 53.270, 53.270, 190.780, 90.00, 90.00, 90.00
R / Rfree (%) 16.3 / 21.4

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Human Carbonmonoxy-Haemoglobin at 1.25 A Resolution (pdb code 1ird). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Human Carbonmonoxy-Haemoglobin at 1.25 A Resolution, PDB code: 1ird:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 1ird

Go back to Iron Binding Sites List in 1ird
Iron binding site 1 out of 2 in the Crystal Structure of Human Carbonmonoxy-Haemoglobin at 1.25 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Human Carbonmonoxy-Haemoglobin at 1.25 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe142

b:13.4
occ:1.00
FE A:HEM142 0.0 13.4 1.0
C A:CMO143 1.7 14.1 1.0
NA A:HEM142 2.0 12.9 1.0
NC A:HEM142 2.0 13.5 1.0
NB A:HEM142 2.0 13.4 1.0
ND A:HEM142 2.1 13.3 1.0
NE2 A:HIS87 2.1 12.7 1.0
O A:CMO143 2.9 14.8 1.0
C4B A:HEM142 3.0 12.9 1.0
C4C A:HEM142 3.0 13.6 1.0
C1D A:HEM142 3.0 14.1 1.0
C1C A:HEM142 3.0 12.7 1.0
CE1 A:HIS87 3.0 13.2 1.0
C4D A:HEM142 3.1 14.1 1.0
C1B A:HEM142 3.1 13.2 1.0
C1A A:HEM142 3.1 13.4 1.0
C4A A:HEM142 3.1 12.8 1.0
CD2 A:HIS87 3.1 14.1 1.0
CHB A:HEM142 3.3 13.8 1.0
CHC A:HEM142 3.4 13.1 1.0
CHD A:HEM142 3.4 13.5 1.0
CHA A:HEM142 3.4 14.2 1.0
ND1 A:HIS87 4.2 13.5 1.0
C3C A:HEM142 4.2 13.2 1.0
C2C A:HEM142 4.2 13.3 1.0
C2B A:HEM142 4.3 13.0 1.0
C3A A:HEM142 4.3 14.1 1.0
C2D A:HEM142 4.3 15.2 1.0
CG A:HIS87 4.3 13.9 1.0
C3B A:HEM142 4.3 12.8 1.0
C3D A:HEM142 4.3 15.2 1.0
C2A A:HEM142 4.4 15.3 1.0
NE2 A:HIS58 4.4 17.7 1.0
CG2 A:VAL62 5.0 15.6 1.0

Iron binding site 2 out of 2 in 1ird

Go back to Iron Binding Sites List in 1ird
Iron binding site 2 out of 2 in the Crystal Structure of Human Carbonmonoxy-Haemoglobin at 1.25 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Human Carbonmonoxy-Haemoglobin at 1.25 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe347

b:16.1
occ:1.00
FE B:HEM347 0.0 16.1 1.0
C B:CMO348 1.7 15.1 1.0
NA B:HEM347 2.0 15.8 1.0
NC B:HEM347 2.0 16.2 1.0
NB B:HEM347 2.0 15.8 1.0
ND B:HEM347 2.0 16.7 1.0
NE2 B:HIS292 2.1 16.5 1.0
O B:CMO348 2.9 16.7 1.0
C1A B:HEM347 3.0 16.6 1.0
C1D B:HEM347 3.0 16.8 1.0
C4B B:HEM347 3.0 16.5 1.0
C4C B:HEM347 3.0 16.1 1.0
C1C B:HEM347 3.1 16.3 1.0
C4A B:HEM347 3.1 16.5 1.0
C1B B:HEM347 3.1 16.3 1.0
CE1 B:HIS292 3.1 16.7 1.0
C4D B:HEM347 3.1 17.9 1.0
CD2 B:HIS292 3.1 17.1 1.0
CHD B:HEM347 3.4 16.6 1.0
CHC B:HEM347 3.4 16.2 1.0
CHB B:HEM347 3.5 16.3 1.0
CHA B:HEM347 3.5 16.1 1.0
ND1 B:HIS292 4.2 15.9 1.0
C2C B:HEM347 4.3 15.3 1.0
C3C B:HEM347 4.3 16.1 1.0
C2D B:HEM347 4.3 17.1 1.0
CG B:HIS292 4.3 14.9 1.0
C3A B:HEM347 4.3 16.8 1.0
C2A B:HEM347 4.3 16.9 1.0
C3B B:HEM347 4.3 16.4 1.0
C2B B:HEM347 4.3 16.1 1.0
C3D B:HEM347 4.3 16.7 1.0
NE2 B:HIS263 4.5 19.1 1.0
CG2 B:VAL267 4.7 18.0 1.0

Reference:

S.-Y.Park, J.R.H.Tame. Carbonmonoxy-Haemoglobin at 1.25 A Resolution To Be Published.
Page generated: Sat Aug 3 08:08:52 2024

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