Atomistry » Iron » PDB 1iro-1j3y » 1iua
Atomistry »
  Iron »
    PDB 1iro-1j3y »
      1iua »

Iron in PDB 1iua: Ultra-High Resolution Structure of Hipip From Thermochromatium Tepidum

Protein crystallography data

The structure of Ultra-High Resolution Structure of Hipip From Thermochromatium Tepidum, PDB code: 1iua was solved by L.Liu, T.Nogi, M.Kobayashi, T.Nozawa, K.Miki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 0.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.697, 58.272, 23.454, 90.00, 90.00, 90.00
R / Rfree (%) 9.2 / 11.4

Iron Binding Sites:

The binding sites of Iron atom in the Ultra-High Resolution Structure of Hipip From Thermochromatium Tepidum (pdb code 1iua). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Ultra-High Resolution Structure of Hipip From Thermochromatium Tepidum, PDB code: 1iua:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 1iua

Go back to Iron Binding Sites List in 1iua
Iron binding site 1 out of 4 in the Ultra-High Resolution Structure of Hipip From Thermochromatium Tepidum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Ultra-High Resolution Structure of Hipip From Thermochromatium Tepidum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe84

b:3.0
occ:1.00
 FE1 A:SF484 0.0 3.0 1.0
S2 A:SF484 2.2 3.2 1.0
SG A:CYS43 2.3 3.3 1.0
S4 A:SF484 2.3 3.2 1.0
S3 A:SF484 2.3 3.2 1.0
FE4 A:SF484 2.7 3.0 1.0
FE3 A:SF484 2.7 3.1 1.0
FE2 A:SF484 2.8 3.1 1.0
CB A:CYS43 3.2 3.4 1.0
CA A:CYS43 3.6 3.3 1.0
S1 A:SF484 3.9 3.3 1.0
N A:CYS43 4.4 3.2 1.0
N A:CYS75 4.5 3.1 1.0
CG1 A:ILE69 4.5 4.9 1.0
CA A:TRP74 4.6 3.1 1.0
C A:TRP74 4.6 3.2 1.0
N A:TRP74 4.8 3.2 1.0
CD1 A:ILE69 4.8 5.5 1.0
CB A:CYS46 4.8 3.5 1.0
SG A:CYS46 4.8 3.4 1.0
SG A:CYS75 4.8 3.3 1.0
C A:CYS43 4.8 3.3 1.0
SG A:CYS61 4.8 3.9 1.0
CE1 A:TYR19 5.0 4.8 1.0
CB A:ILE69 5.0 4.5 1.0
O A:CYS43 5.0 3.9 1.0
C A:GLY73 5.0 3.2 1.0

Iron binding site 2 out of 4 in 1iua

Go back to Iron Binding Sites List in 1iua
Iron binding site 2 out of 4 in the Ultra-High Resolution Structure of Hipip From Thermochromatium Tepidum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Ultra-High Resolution Structure of Hipip From Thermochromatium Tepidum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe84

b:3.1
occ:1.00
 FE2 A:SF484 0.0 3.1 1.0
S1 A:SF484 2.2 3.3 1.0
SG A:CYS46 2.3 3.4 1.0
S3 A:SF484 2.3 3.2 1.0
S4 A:SF484 2.3 3.2 1.0
FE3 A:SF484 2.7 3.1 1.0
FE4 A:SF484 2.7 3.0 1.0
FE1 A:SF484 2.8 3.0 1.0
CB A:CYS46 3.1 3.5 1.0
S2 A:SF484 3.9 3.2 1.0
CB A:PHE48 4.2 3.6 1.0
CA A:TRP78 4.2 3.3 1.0
CA A:CYS46 4.6 3.6 1.0
N A:TRP78 4.6 3.4 1.0
CD2 A:PHE48 4.6 4.9 1.0
SG A:CYS61 4.6 3.9 1.0
N A:PHE48 4.7 3.7 1.0
CA A:CYS43 4.7 3.3 1.0
CD1 A:TRP78 4.7 3.4 1.0
N A:MET49 4.7 3.8 1.0
SG A:CYS75 4.8 3.3 1.0
O A:SER77 4.8 4.4 1.0
SG A:CYS43 4.8 3.3 1.0
CA A:PHE48 4.8 3.8 1.0
C A:SER77 4.8 3.6 1.0
C A:PHE48 4.9 3.8 1.0
CG A:PHE48 5.0 3.9 1.0
CB A:TRP78 5.0 3.5 1.0
N A:THR79 5.0 3.7 1.0
C A:CYS46 5.0 3.6 1.0

Iron binding site 3 out of 4 in 1iua

Go back to Iron Binding Sites List in 1iua
Iron binding site 3 out of 4 in the Ultra-High Resolution Structure of Hipip From Thermochromatium Tepidum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Ultra-High Resolution Structure of Hipip From Thermochromatium Tepidum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe84

b:3.1
occ:1.00
 FE3 A:SF484 0.0 3.1 1.0
S4 A:SF484 2.2 3.2 1.0
SG A:CYS61 2.3 3.9 1.0
S1 A:SF484 2.3 3.3 1.0
S2 A:SF484 2.3 3.2 1.0
FE2 A:SF484 2.7 3.1 1.0
FE1 A:SF484 2.7 3.0 1.0
FE4 A:SF484 2.7 3.0 1.0
CB A:CYS61 3.3 4.2 1.0
S3 A:SF484 3.9 3.2 1.0
CB A:PHE48 4.3 3.6 1.0
CA A:CYS61 4.4 3.9 1.0
SG A:CYS75 4.5 3.3 1.0
CD2 A:PHE64 4.7 4.6 1.0
CG1 A:ILE69 4.7 4.9 1.0
SG A:CYS43 4.7 3.3 1.0
SG A:CYS46 4.7 3.4 1.0
CE2 A:PHE64 4.7 5.6 1.0
C A:PHE48 4.9 3.8 1.0
CG A:LEU63 4.9 4.4 1.0
CD1 A:LEU63 4.9 5.0 1.0
CG2 A:ILE69 5.0 6.2 1.0
O A:PHE48 5.0 4.5 1.0

Iron binding site 4 out of 4 in 1iua

Go back to Iron Binding Sites List in 1iua
Iron binding site 4 out of 4 in the Ultra-High Resolution Structure of Hipip From Thermochromatium Tepidum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Ultra-High Resolution Structure of Hipip From Thermochromatium Tepidum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe84

b:3.0
occ:1.00
 FE4 A:SF484 0.0 3.0 1.0
SG A:CYS75 2.3 3.3 1.0
S3 A:SF484 2.3 3.2 1.0
S1 A:SF484 2.3 3.3 1.0
S2 A:SF484 2.3 3.2 1.0
FE1 A:SF484 2.7 3.0 1.0
FE2 A:SF484 2.7 3.1 1.0
FE3 A:SF484 2.7 3.1 1.0
CB A:CYS75 3.2 3.2 1.0
N A:CYS75 3.6 3.1 1.0
CA A:CYS75 3.8 3.2 1.0
S4 A:SF484 3.9 3.2 1.0
O A:CYS75 4.1 3.4 1.0
C A:CYS75 4.2 3.2 1.0
N A:TRP78 4.4 3.4 1.0
C A:TRP74 4.4 3.2 1.0
C A:SER77 4.6 3.6 1.0
SG A:CYS61 4.7 3.9 1.0
CA A:TRP78 4.7 3.3 1.0
SG A:CYS43 4.7 3.3 1.0
CB A:SER77 4.8 4.8 1.0
N A:SER77 4.8 3.7 1.0
SG A:CYS46 4.8 3.4 1.0
CA A:SER77 4.9 3.8 1.0

Reference:

L.Liu, T.Nogi, M.Kobayashi, T.Nozawa, K.Miki. Ultrahigh-Resolution Structure of High-Potential Iron-Sulfur Protein From Thermochromatium Tepidum. Acta Crystallogr.,Sect.D V. 58 1085 2002.
ISSN: ISSN 0907-4449
PubMed: 12077426
DOI: 10.1107/S0907444902006261
Page generated: Sat Aug 3 08:14:44 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy