Iron in PDB 1jdo: Sperm Whale Myoglobin (Ferrous, Nitric Oxide Bound)

The structure of Sperm Whale Myoglobin (Ferrous, Nitric Oxide Bound), PDB code: 1jdo was solved by E.A.Brucker, G.N.Phillips Jr., with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	5.00 / 1.90
Space group	P 6
Cell size a, b, c (Å), α, β, γ (°)	91.506, 91.506, 45.853, 90.00, 90.00, 120.00
R / Rfree (%)	15.3 / 20.6

The binding sites of Iron atom in the Sperm Whale Myoglobin (Ferrous, Nitric Oxide Bound) (pdb code 1jdo). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Sperm Whale Myoglobin (Ferrous, Nitric Oxide Bound), PDB code: 1jdo:

Iron binding site 1 out of 1 in the Sperm Whale Myoglobin (Ferrous, Nitric Oxide Bound)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Sperm Whale Myoglobin (Ferrous, Nitric Oxide Bound) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe160 b:16.9 occ:1.00 FE A:HEM160 0.0 16.9 1.0 N A:NO170 1.9 16.1 1.0 NC A:HEM160 1.9 12.1 1.0 ND A:HEM160 2.0 13.5 1.0 NA A:HEM160 2.0 14.1 1.0 NB A:HEM160 2.0 13.8 1.0 NE2 A:HIS93 2.3 16.0 1.0 O A:NO170 2.7 22.9 1.0 C4C A:HEM160 3.0 18.2 1.0 C1C A:HEM160 3.0 13.3 1.0 C1D A:HEM160 3.0 16.1 1.0 C4D A:HEM160 3.0 14.2 1.0 C4A A:HEM160 3.0 15.7 1.0 C4B A:HEM160 3.0 13.7 1.0 C1A A:HEM160 3.0 13.4 1.0 C1B A:HEM160 3.0 14.8 1.0 CE1 A:HIS93 3.2 19.4 1.0 CD2 A:HIS93 3.3 16.8 1.0 CHD A:HEM160 3.4 14.6 1.0 CHC A:HEM160 3.4 17.6 1.0 CHA A:HEM160 3.4 15.4 1.0 CHB A:HEM160 3.4 11.1 1.0 C2C A:HEM160 4.2 20.0 1.0 C3C A:HEM160 4.2 24.1 1.0 C3D A:HEM160 4.2 16.4 1.0 C2D A:HEM160 4.2 18.9 1.0 C2A A:HEM160 4.3 16.8 1.0 C3A A:HEM160 4.3 15.6 1.0 C2B A:HEM160 4.3 19.0 1.0 C3B A:HEM160 4.3 16.6 1.0 ND1 A:HIS93 4.4 15.7 1.0 CG A:HIS93 4.4 16.1 1.0 CG2 A:VAL68 4.6 13.5 1.0 CE1 A:HIS64 4.7 14.3 1.0 NE2 A:HIS64 4.9 21.9 1.0

E.A.Brucker, J.S.Olson, M.Ikeda-Saito, G.N.Phillips Jr.. Nitric Oxide Myoglobin: Crystal Structure and Analysis of Ligand Geometry. Proteins V. 30 352 1998.
ISSN: ISSN 0887-3585
PubMed: 9533619
DOI: 10.1002/(SICI)1097-0134(19980301)30:4<352::AID-PROT2>3.3.CO;2-G