Iron in PDB 1l9g: Crystal Structure of Uracil-Dna Glycosylase From T. Maritima

The structure of Crystal Structure of Uracil-Dna Glycosylase From T. Maritima, PDB code: 1l9g was solved by K.R.Rajashankar, T.Dodatko, R.A.Thirumuruhan, M.Sandigursky, A.Bresnik, M.R.Chance, W.A.Franklin, S.C.Almo, S.K.Burley, New York Sgx Researchcenter For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.50
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	60.500, 60.500, 127.400, 90.00, 90.00, 90.00
R / Rfree (%)	22.6 / 28.1

The binding sites of Iron atom in the Crystal Structure of Uracil-Dna Glycosylase From T. Maritima (pdb code 1l9g). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of Uracil-Dna Glycosylase From T. Maritima, PDB code: 1l9g:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Crystal Structure of Uracil-Dna Glycosylase From T. Maritima


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Uracil-Dna Glycosylase From T. Maritima within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:30.5 occ:1.00 FE1 A:SF4201 0.0 30.5 1.0 S2 A:SF4201 2.3 28.7 1.0 S4 A:SF4201 2.3 29.1 1.0 SG A:CYS105 2.3 29.5 1.0 S3 A:SF4201 2.3 30.4 1.0 FE2 A:SF4201 2.6 28.8 1.0 FE3 A:SF4201 2.6 29.6 1.0 FE4 A:SF4201 2.7 32.0 1.0 CB A:CYS105 3.1 32.1 1.0 S1 A:SF4201 3.9 28.4 1.0 CA A:CYS105 3.9 32.1 1.0 N A:LYS88 4.2 29.0 1.0 CB A:LYS88 4.4 28.7 1.0 CE2 A:PHE108 4.5 30.3 1.0 SG A:CYS18 4.5 30.3 1.0 CD2 A:PHE108 4.5 29.6 1.0 SG A:CYS89 4.6 30.3 1.0 SG A:CYS21 4.7 31.9 1.0 N A:CYS105 4.7 32.8 1.0 CA A:LYS88 4.8 29.4 1.0 N A:CYS89 4.8 31.5 1.0

Iron binding site 2 out of 4 in the Crystal Structure of Uracil-Dna Glycosylase From T. Maritima


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Uracil-Dna Glycosylase From T. Maritima within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:28.8 occ:1.00 FE2 A:SF4201 0.0 28.8 1.0 SG A:CYS18 2.3 30.3 1.0 S3 A:SF4201 2.3 30.4 1.0 S4 A:SF4201 2.3 29.1 1.0 S1 A:SF4201 2.3 28.4 1.0 FE1 A:SF4201 2.6 30.5 1.0 FE4 A:SF4201 2.6 32.0 1.0 FE3 A:SF4201 2.6 29.6 1.0 CB A:CYS18 3.2 31.7 1.0 S2 A:SF4201 3.8 28.7 1.0 N A:ALA20 3.9 35.4 1.0 CB A:ALA20 4.1 37.2 1.0 C A:CYS18 4.1 35.2 1.0 CA A:CYS18 4.3 33.5 1.0 N A:THR19 4.3 35.7 1.0 CE2 A:PHE108 4.4 30.3 1.0 O A:CYS18 4.4 35.6 1.0 N A:CYS21 4.4 33.8 1.0 CA A:ALA20 4.5 34.8 1.0 SG A:CYS105 4.6 29.5 1.0 SG A:CYS89 4.7 30.3 1.0 SG A:CYS21 4.8 31.9 1.0 C A:THR19 4.8 37.3 1.0 CA A:THR19 4.8 37.2 1.0 C A:ALA20 5.0 34.5 1.0

Iron binding site 3 out of 4 in the Crystal Structure of Uracil-Dna Glycosylase From T. Maritima


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Uracil-Dna Glycosylase From T. Maritima within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:29.6 occ:1.00 FE3 A:SF4201 0.0 29.6 1.0 S1 A:SF4201 2.3 28.4 1.0 SG A:CYS89 2.3 30.3 1.0 S2 A:SF4201 2.3 28.7 1.0 S4 A:SF4201 2.3 29.1 1.0 FE2 A:SF4201 2.6 28.8 1.0 FE1 A:SF4201 2.6 30.5 1.0 FE4 A:SF4201 2.6 32.0 1.0 CB A:CYS89 3.3 31.2 1.0 S3 A:SF4201 3.8 30.4 1.0 N A:CYS89 4.0 31.5 1.0 CA A:CYS89 4.3 31.7 1.0 N A:HIS24 4.5 35.1 1.0 SG A:CYS21 4.6 31.9 1.0 CB A:LEU23 4.6 33.5 1.0 CA A:HIS24 4.7 36.5 1.0 SG A:CYS105 4.7 29.5 1.0 C A:LYS88 4.7 30.1 1.0 SG A:CYS18 4.7 30.3 1.0 CB A:LYS88 4.7 28.7 1.0 C A:LEU23 4.7 35.9 1.0 CB A:HIS24 4.7 36.7 1.0 CB A:CYS18 4.9 31.7 1.0 N A:LYS88 5.0 29.0 1.0

Iron binding site 4 out of 4 in the Crystal Structure of Uracil-Dna Glycosylase From T. Maritima


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Uracil-Dna Glycosylase From T. Maritima within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:32.0 occ:1.00 FE4 A:SF4201 0.0 32.0 1.0 S3 A:SF4201 2.2 30.4 1.0 SG A:CYS21 2.3 31.9 1.0 S2 A:SF4201 2.3 28.7 1.0 S1 A:SF4201 2.3 28.4 1.0 FE2 A:SF4201 2.6 28.8 1.0 FE3 A:SF4201 2.6 29.6 1.0 FE1 A:SF4201 2.7 30.5 1.0 CB A:CYS21 3.4 33.2 1.0 N A:CYS21 3.6 33.8 1.0 S4 A:SF4201 3.9 29.1 1.0 CA A:CYS21 3.9 33.3 1.0 CB A:LEU23 4.2 33.5 1.0 O A:CYS21 4.2 34.9 1.0 C A:CYS21 4.3 33.6 1.0 SG A:CYS18 4.6 30.3 1.0 C A:ALA20 4.6 34.5 1.0 SG A:CYS89 4.6 30.3 1.0 N A:HIS24 4.7 35.1 1.0 SG A:CYS105 4.7 29.5 1.0 N A:LEU23 4.7 35.9 1.0 CB A:CYS105 4.8 32.1 1.0 CB A:ALA20 4.8 37.2 1.0 CA A:LEU23 4.9 35.7 1.0 N A:ALA20 4.9 35.4 1.0 CG A:LEU23 4.9 33.2 1.0 CD1 A:LEU23 5.0 31.6 1.0 CA A:ALA20 5.0 34.8 1.0

K.R.Rajashankar, T.Dodatko, R.A.Thirumuruhan, M.Sandigursky, A.Bresnik, M.R.Chance, W.A.Franklin, S.C.Almo. Crystal Structure of Uracil-Dna Glycosylase From T. Maritima To Be Published.