Atomistry » Iron » PDB 1kqj-1lfg » 1la6
Atomistry »
  Iron »
    PDB 1kqj-1lfg »
      1la6 »

Iron in PDB 1la6: The Crystal Structure of Trematomus Newnesi Hemoglobin in A Partial Hemichrome State

Protein crystallography data

The structure of The Crystal Structure of Trematomus Newnesi Hemoglobin in A Partial Hemichrome State, PDB code: 1la6 was solved by A.Riccio, L.Vitagliano, G.Di Prisco, A.Zagari, L.Mazzarella, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 12.00 / 2.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 89.853, 88.190, 55.142, 90.00, 97.79, 90.00
R / Rfree (%) 17.9 / 21.2

Iron Binding Sites:

The binding sites of Iron atom in the The Crystal Structure of Trematomus Newnesi Hemoglobin in A Partial Hemichrome State (pdb code 1la6). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the The Crystal Structure of Trematomus Newnesi Hemoglobin in A Partial Hemichrome State, PDB code: 1la6:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 1la6

Go back to Iron Binding Sites List in 1la6
Iron binding site 1 out of 2 in the The Crystal Structure of Trematomus Newnesi Hemoglobin in A Partial Hemichrome State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Crystal Structure of Trematomus Newnesi Hemoglobin in A Partial Hemichrome State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe143

b:24.0
occ:1.00
FE A:HEM143 0.0 24.0 1.0
C A:CMO144 1.9 24.6 1.0
NA A:HEM143 2.0 24.8 1.0
ND A:HEM143 2.0 23.2 1.0
NC A:HEM143 2.0 21.6 1.0
NB A:HEM143 2.0 21.3 1.0
NE2 A:HIS88 2.1 21.4 1.0
O A:CMO144 3.0 31.6 1.0
C1A A:HEM143 3.0 26.0 1.0
CE1 A:HIS88 3.0 19.8 1.0
C4D A:HEM143 3.0 25.4 1.0
C1D A:HEM143 3.0 21.3 1.0
C4A A:HEM143 3.0 25.4 1.0
C4C A:HEM143 3.0 23.0 1.0
C1B A:HEM143 3.0 21.2 1.0
C1C A:HEM143 3.1 20.9 1.0
C4B A:HEM143 3.1 19.8 1.0
CD2 A:HIS88 3.1 20.9 1.0
CHD A:HEM143 3.4 22.1 1.0
CHA A:HEM143 3.4 23.8 1.0
CHC A:HEM143 3.4 18.9 1.0
CHB A:HEM143 3.4 23.1 1.0
ND1 A:HIS88 4.2 20.2 1.0
C2A A:HEM143 4.2 27.6 1.0
NE2 A:HIS59 4.2 27.7 1.0
C3D A:HEM143 4.2 26.3 1.0
C3A A:HEM143 4.2 25.9 1.0
C2D A:HEM143 4.3 23.3 1.0
C2B A:HEM143 4.3 22.1 1.0
CG A:HIS88 4.3 20.1 1.0
C3C A:HEM143 4.3 22.6 1.0
C2C A:HEM143 4.3 20.4 1.0
C3B A:HEM143 4.3 21.3 1.0
CE1 A:HIS59 4.8 27.1 1.0
CD1 A:LEU92 4.9 33.4 1.0

Iron binding site 2 out of 2 in 1la6

Go back to Iron Binding Sites List in 1la6
Iron binding site 2 out of 2 in the The Crystal Structure of Trematomus Newnesi Hemoglobin in A Partial Hemichrome State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The Crystal Structure of Trematomus Newnesi Hemoglobin in A Partial Hemichrome State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe147

b:41.1
occ:1.00
FE B:HEM147 0.0 41.1 1.0
ND B:HEM147 1.9 44.1 1.0
NE2 B:HIS63 2.0 33.8 1.0
NA B:HEM147 2.0 45.2 1.0
NE2 B:HIS92 2.0 39.9 1.0
NC B:HEM147 2.0 45.1 1.0
NB B:HEM147 2.1 40.4 1.0
CE1 B:HIS63 2.9 31.1 1.0
CD2 B:HIS92 3.0 39.5 1.0
C4D B:HEM147 3.0 48.2 1.0
C1D B:HEM147 3.0 47.2 1.0
CE1 B:HIS92 3.0 39.6 1.0
C1A B:HEM147 3.0 48.0 1.0
C4C B:HEM147 3.1 45.7 1.0
C4A B:HEM147 3.1 44.6 1.0
C1C B:HEM147 3.1 44.3 1.0
CD2 B:HIS63 3.1 29.7 1.0
C4B B:HEM147 3.1 40.3 1.0
C1B B:HEM147 3.2 40.0 1.0
CHA B:HEM147 3.3 48.6 1.0
CHD B:HEM147 3.4 45.7 1.0
CHC B:HEM147 3.5 42.3 1.0
CHB B:HEM147 3.5 41.3 1.0
ND1 B:HIS63 4.1 30.1 1.0
ND1 B:HIS92 4.1 38.5 1.0
CG B:HIS92 4.1 40.0 1.0
CG B:HIS63 4.2 28.5 1.0
C3D B:HEM147 4.2 51.1 1.0
C2D B:HEM147 4.2 50.1 1.0
C2A B:HEM147 4.3 48.9 1.0
C3A B:HEM147 4.3 47.3 1.0
C3C B:HEM147 4.4 46.7 1.0
C2C B:HEM147 4.4 44.3 1.0
C2B B:HEM147 4.4 40.5 1.0
C3B B:HEM147 4.4 39.9 1.0
CG2 B:VAL67 4.8 25.2 1.0

Reference:

A.Riccio, L.Vitagliano, G.Di Prisco, A.Zagari, L.Mazzarella. The Crystal Structure of A Tetrameric Hemoglobin in A Partial Hemichrome State Proc.Natl.Acad.Sci.Usa V. 99 9801 2002.
ISSN: ISSN 0027-8424
PubMed: 12093902
DOI: 10.1073/PNAS.132182099
Page generated: Wed Jul 16 17:21:42 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy