Iron in PDB 1lm6: Crystal Structure of Peptide Deformylase From Streptococcus Pneumoniae

All present enzymatic activity of Crystal Structure of Peptide Deformylase From Streptococcus Pneumoniae:
3.5.1.88;

The structure of Crystal Structure of Peptide Deformylase From Streptococcus Pneumoniae, PDB code: 1lm6 was solved by A.Kreusch, G.Spraggon, C.C.Lee, H.Klock, D.Mcmullan, K.Ng, T.Shin, J.Vincent, I.Warner, C.Ericson, S.A.Lesley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.65 / 1.75
Space group	P 43
Cell size a, b, c (Å), α, β, γ (°)	49.709, 49.709, 91.407, 90.00, 90.00, 90.00
R / Rfree (%)	20.8 / 25.6

The binding sites of Iron atom in the Crystal Structure of Peptide Deformylase From Streptococcus Pneumoniae (pdb code 1lm6). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Peptide Deformylase From Streptococcus Pneumoniae, PDB code: 1lm6:

Iron binding site 1 out of 1 in the Crystal Structure of Peptide Deformylase From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Peptide Deformylase From Streptococcus Pneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe204 b:61.5 occ:1.00 NE2 A:HIS177 1.9 26.7 1.0 NE2 A:HIS173 2.4 34.0 1.0 O A:HOH369 2.4 28.6 1.0 SG A:OCS130 2.5 31.3 1.0 CE1 A:HIS177 2.8 25.6 1.0 OD1 A:OCS130 2.9 26.1 1.0 CD2 A:HIS177 3.0 27.2 1.0 OD3 A:OCS130 3.1 42.9 1.0 O A:HOH400 3.2 37.1 1.0 CD2 A:HIS173 3.3 29.1 1.0 CE1 A:HIS173 3.4 37.4 1.0 NE2 A:GLN77 3.6 30.5 1.0 O A:HOH345 3.6 27.0 1.0 CB A:OCS130 3.9 28.4 1.0 CD A:GLN77 3.9 30.9 1.0 ND1 A:HIS177 4.0 23.1 1.0 OE1 A:GLN77 4.0 27.3 1.0 CG A:HIS177 4.1 27.0 1.0 OE2 A:GLU174 4.2 30.1 1.0 O A:HOH336 4.3 25.3 1.0 CA A:OCS130 4.3 29.2 1.0 CG A:HIS173 4.4 27.8 1.0 ND1 A:HIS173 4.4 28.1 1.0 OE1 A:GLU174 4.6 31.1 1.0 CD A:GLU174 4.8 33.6 1.0 N A:LEU131 4.9 34.0 1.0 CG A:GLN77 4.9 25.1 1.0

A.Kreusch, G.Spraggon, C.C.Lee, H.Klock, D.Mcmullan, K.Ng, T.Shin, J.Vincent, I.Warner, C.Ericson, S.A.Lesley. Structure Analysis of Peptide Deformylases From Streptococcus Pneumoniae,Staphylococcus Aureus, Thermotoga Maritima, and Pseudomonas Aeruginosa: Snapshots of the Oxygen Sensitivity of Peptide Deformylase J.Mol.Biol. V. 330 309 2003.
ISSN: ISSN 0022-2836
PubMed: 12823970
DOI: 10.1016/S0022-2836(03)00596-5