Atomistry » Iron » PDB 1lrm-1m6m » 1m2a
Atomistry »
  Iron »
    PDB 1lrm-1m6m »
      1m2a »

Iron in PDB 1m2a: Crystal Structure at 1.5 Angstroms Resolution of the Wild Type Thioredoxin-Like [2FE-2S] Ferredoxin From Aquifex Aeolicus

Protein crystallography data

The structure of Crystal Structure at 1.5 Angstroms Resolution of the Wild Type Thioredoxin-Like [2FE-2S] Ferredoxin From Aquifex Aeolicus, PDB code: 1m2a was solved by A.P.Yeh, X.I.Ambroggio, S.L.A.Andrade, O.Einsle, C.Chatelet, J.Meyer, D.C.Rees, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.50 / 1.50
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 67.200, 59.800, 47.200, 90.00, 110.30, 90.00
R / Rfree (%) 18.4 / 21.6

Other elements in 1m2a:

The structure of Crystal Structure at 1.5 Angstroms Resolution of the Wild Type Thioredoxin-Like [2FE-2S] Ferredoxin From Aquifex Aeolicus also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure at 1.5 Angstroms Resolution of the Wild Type Thioredoxin-Like [2FE-2S] Ferredoxin From Aquifex Aeolicus (pdb code 1m2a). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure at 1.5 Angstroms Resolution of the Wild Type Thioredoxin-Like [2FE-2S] Ferredoxin From Aquifex Aeolicus, PDB code: 1m2a:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 1m2a

Go back to Iron Binding Sites List in 1m2a
Iron binding site 1 out of 4 in the Crystal Structure at 1.5 Angstroms Resolution of the Wild Type Thioredoxin-Like [2FE-2S] Ferredoxin From Aquifex Aeolicus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure at 1.5 Angstroms Resolution of the Wild Type Thioredoxin-Like [2FE-2S] Ferredoxin From Aquifex Aeolicus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:12.2
occ:1.00
FE1 A:FES201 0.0 12.2 1.0
S2 A:FES201 2.2 12.9 1.0
S1 A:FES201 2.2 13.3 1.0
SG A:CYS9 2.3 11.5 1.0
SG A:CYS22 2.3 12.9 1.0
FE2 A:FES201 2.7 13.5 1.0
CB A:CYS22 3.3 12.3 1.0
CB A:CYS9 3.3 8.8 1.0
N A:CYS22 3.9 12.7 1.0
CA A:CYS55 4.1 11.6 1.0
CA A:CYS22 4.2 12.7 1.0
O A:HOH318 4.3 18.9 1.0
N A:MET56 4.4 11.5 1.0
CB A:GLN11 4.5 13.6 1.0
SG A:CYS55 4.6 14.3 1.0
CA A:CYS9 4.6 9.5 1.0
CG2 A:VAL64 4.7 13.6 1.0
CB A:CYS55 4.7 13.9 1.0
SG A:CYS59 4.7 15.3 1.0
C A:CYS55 4.8 12.8 1.0
CB A:VAL64 4.8 9.3 1.0
CA A:CYS59 4.9 13.6 1.0
C A:CYS9 4.9 11.1 1.0
N A:CYS55 4.9 12.8 1.0
C A:SER21 4.9 18.3 1.0
O A:CYS9 5.0 11.0 1.0

Iron binding site 2 out of 4 in 1m2a

Go back to Iron Binding Sites List in 1m2a
Iron binding site 2 out of 4 in the Crystal Structure at 1.5 Angstroms Resolution of the Wild Type Thioredoxin-Like [2FE-2S] Ferredoxin From Aquifex Aeolicus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure at 1.5 Angstroms Resolution of the Wild Type Thioredoxin-Like [2FE-2S] Ferredoxin From Aquifex Aeolicus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:13.5
occ:1.00
FE2 A:FES201 0.0 13.5 1.0
S1 A:FES201 2.2 13.3 1.0
S2 A:FES201 2.2 12.9 1.0
SG A:CYS59 2.3 15.3 1.0
SG A:CYS55 2.3 14.3 1.0
FE1 A:FES201 2.7 12.2 1.0
CB A:CYS55 3.4 13.9 1.0
CB A:CYS59 3.4 18.4 1.0
CA A:CYS55 3.7 11.6 1.0
CA A:CYS59 3.7 13.6 1.0
N A:CYS59 3.9 16.6 1.0
NH1 A:ARG13 4.0 17.6 1.0
N A:ASN57 4.0 14.3 1.0
N A:MET56 4.0 11.5 1.0
NH2 A:ARG13 4.1 27.5 1.0
C A:CYS55 4.3 12.8 1.0
N A:ALA58 4.3 15.6 1.0
SG A:CYS9 4.4 11.5 1.0
CZ A:ARG13 4.4 25.9 1.0
CA A:ASN57 4.5 16.2 1.0
SG A:CYS22 4.6 12.9 1.0
C A:ALA58 4.7 11.9 1.0
C A:ASN57 4.8 18.6 1.0
C A:MET56 4.9 14.9 1.0
N A:CYS55 4.9 12.8 1.0

Iron binding site 3 out of 4 in 1m2a

Go back to Iron Binding Sites List in 1m2a
Iron binding site 3 out of 4 in the Crystal Structure at 1.5 Angstroms Resolution of the Wild Type Thioredoxin-Like [2FE-2S] Ferredoxin From Aquifex Aeolicus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure at 1.5 Angstroms Resolution of the Wild Type Thioredoxin-Like [2FE-2S] Ferredoxin From Aquifex Aeolicus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe202

b:12.0
occ:1.00
FE1 B:FES202 0.0 12.0 1.0
S2 B:FES202 2.2 12.7 1.0
S1 B:FES202 2.2 13.3 1.0
SG B:CYS9 2.3 11.1 1.0
SG B:CYS22 2.3 11.5 1.0
FE2 B:FES202 2.7 13.3 1.0
CB B:CYS22 3.2 11.2 1.0
CB B:CYS9 3.3 8.7 1.0
N B:CYS22 3.9 11.4 1.0
CA B:CYS55 4.1 11.8 1.0
CA B:CYS22 4.2 11.1 1.0
O B:HOH431 4.2 18.6 1.0
N B:MET56 4.4 11.2 1.0
CB B:GLN11 4.4 12.4 1.0
SG B:CYS55 4.6 14.1 1.0
CA B:CYS9 4.6 8.6 1.0
CB B:CYS55 4.7 11.5 1.0
CG2 B:VAL64 4.7 11.2 1.0
SG B:CYS59 4.8 16.2 1.0
CA B:CYS59 4.8 13.9 1.0
C B:CYS55 4.8 11.5 1.0
CB B:VAL64 4.9 10.0 1.0
C B:CYS9 4.9 12.2 1.0
N B:CYS55 5.0 11.2 1.0
O B:CYS9 5.0 11.6 1.0
C B:SER21 5.0 14.2 1.0

Iron binding site 4 out of 4 in 1m2a

Go back to Iron Binding Sites List in 1m2a
Iron binding site 4 out of 4 in the Crystal Structure at 1.5 Angstroms Resolution of the Wild Type Thioredoxin-Like [2FE-2S] Ferredoxin From Aquifex Aeolicus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure at 1.5 Angstroms Resolution of the Wild Type Thioredoxin-Like [2FE-2S] Ferredoxin From Aquifex Aeolicus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe202

b:13.3
occ:1.00
FE2 B:FES202 0.0 13.3 1.0
S1 B:FES202 2.2 13.3 1.0
S2 B:FES202 2.3 12.7 1.0
SG B:CYS59 2.3 16.2 1.0
SG B:CYS55 2.4 14.1 1.0
FE1 B:FES202 2.7 12.0 1.0
CB B:CYS55 3.4 11.5 1.0
CB B:CYS59 3.4 14.3 1.0
CA B:CYS55 3.7 11.8 1.0
CA B:CYS59 3.7 13.9 1.0
NH1 B:ARG13 3.9 8.0 0.5
N B:CYS59 3.9 13.7 1.0
NH2 B:ARG13 3.9 21.9 0.5
N B:MET56 4.0 11.2 1.0
N B:ASN57 4.0 14.1 1.0
N B:ALA58 4.3 16.1 1.0
C B:CYS55 4.3 11.5 1.0
CZ B:ARG13 4.3 20.5 0.5
SG B:CYS9 4.4 11.1 1.0
CA B:ASN57 4.5 16.8 1.0
SG B:CYS22 4.6 11.5 1.0
C B:ALA58 4.7 15.0 1.0
C B:ASN57 4.9 21.9 1.0
C B:MET56 4.9 13.9 1.0
N B:CYS55 5.0 11.2 1.0
O B:HOH431 5.0 18.6 1.0

Reference:

A.P.Yeh, X.I.Ambroggio, S.L.A.Andrade, O.Einsle, C.Chatelet, J.Meyer, D.C.Rees. High-Resolution Crystal Structures of the Wild Type and Cys-55-->Ser and Cys-59-->Ser Variants of the Thioredoxin-Like [2FE-2S] Ferredoxin From Aquifex Aeolicus J.Biol.Chem. V. 277 34499 2002.
ISSN: ISSN 0021-9258
PubMed: 12089152
DOI: 10.1074/JBC.M205096200
Page generated: Sat Aug 3 09:58:39 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy