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Iron in PDB 1o1p: Deoxy Hemoglobin (A-Gly-C:V1M; B,D:V1M,C93A,N108K)

Protein crystallography data

The structure of Deoxy Hemoglobin (A-Gly-C:V1M; B,D:V1M,C93A,N108K), PDB code: 1o1p was solved by E.A.Brucker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 63.031, 83.119, 53.873, 90.00, 99.04, 90.00
R / Rfree (%) 18.8 / 24.5

Iron Binding Sites:

The binding sites of Iron atom in the Deoxy Hemoglobin (A-Gly-C:V1M; B,D:V1M,C93A,N108K) (pdb code 1o1p). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Deoxy Hemoglobin (A-Gly-C:V1M; B,D:V1M,C93A,N108K), PDB code: 1o1p:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 1o1p

Go back to Iron Binding Sites List in 1o1p
Iron binding site 1 out of 4 in the Deoxy Hemoglobin (A-Gly-C:V1M; B,D:V1M,C93A,N108K)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Deoxy Hemoglobin (A-Gly-C:V1M; B,D:V1M,C93A,N108K) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe284

b:18.3
occ:1.00
FE A:HEM284 0.0 18.3 1.0
ND A:HEM284 2.0 13.0 1.0
NA A:HEM284 2.0 13.9 1.0
NC A:HEM284 2.1 14.5 1.0
NB A:HEM284 2.1 16.6 1.0
NE2 A:HIS87 2.2 15.3 1.0
CE1 A:HIS87 3.0 11.4 1.0
C4A A:HEM284 3.1 13.1 1.0
C1B A:HEM284 3.1 17.6 1.0
C4B A:HEM284 3.1 15.8 1.0
C1A A:HEM284 3.1 20.6 1.0
C4D A:HEM284 3.1 12.8 1.0
C4C A:HEM284 3.1 12.6 1.0
C1D A:HEM284 3.1 17.0 1.0
C1C A:HEM284 3.1 13.2 1.0
CD2 A:HIS87 3.4 15.0 1.0
CHB A:HEM284 3.4 15.7 1.0
CHA A:HEM284 3.4 15.9 1.0
CHD A:HEM284 3.5 16.6 1.0
CHC A:HEM284 3.5 12.4 1.0
O A:HOH1001 3.6 26.2 1.0
ND1 A:HIS87 4.2 15.8 1.0
C3B A:HEM284 4.3 14.5 1.0
C2B A:HEM284 4.3 15.3 1.0
C2A A:HEM284 4.3 25.9 1.0
C3A A:HEM284 4.3 17.6 1.0
C3D A:HEM284 4.3 12.2 1.0
C2D A:HEM284 4.3 12.7 1.0
C2C A:HEM284 4.3 11.3 1.0
C3C A:HEM284 4.3 17.1 1.0
CE1 A:HIS58 4.3 18.6 1.0
CD1 A:LEU91 4.4 16.0 1.0
NE2 A:HIS58 4.4 17.6 1.0
CG A:HIS87 4.4 15.0 1.0

Iron binding site 2 out of 4 in 1o1p

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Iron binding site 2 out of 4 in the Deoxy Hemoglobin (A-Gly-C:V1M; B,D:V1M,C93A,N108K)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Deoxy Hemoglobin (A-Gly-C:V1M; B,D:V1M,C93A,N108K) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe285

b:14.5
occ:1.00
FE A:HEM285 0.0 14.5 1.0
ND A:HEM285 2.0 13.2 1.0
NA A:HEM285 2.1 12.2 1.0
NC A:HEM285 2.1 13.5 1.0
NB A:HEM285 2.1 15.5 1.0
NE2 A:HIS229 2.2 15.0 1.0
CE1 A:HIS229 3.0 12.2 1.0
C4B A:HEM285 3.1 14.4 1.0
C1B A:HEM285 3.1 17.1 1.0
C4C A:HEM285 3.1 13.6 1.0
C4A A:HEM285 3.1 12.4 1.0
C1A A:HEM285 3.1 20.0 1.0
C4D A:HEM285 3.1 12.4 1.0
C1D A:HEM285 3.1 16.4 1.0
C1C A:HEM285 3.1 13.8 1.0
CD2 A:HIS229 3.4 13.9 1.0
CHA A:HEM285 3.4 15.6 1.0
CHB A:HEM285 3.4 13.2 1.0
CHD A:HEM285 3.4 15.0 1.0
CHC A:HEM285 3.5 12.5 1.0
O A:HOH1002 3.7 30.5 1.0
ND1 A:HIS229 4.2 15.7 1.0
C3B A:HEM285 4.3 13.8 1.0
C2B A:HEM285 4.3 15.1 1.0
C2A A:HEM285 4.3 25.5 1.0
C3D A:HEM285 4.3 11.3 1.0
C2D A:HEM285 4.3 13.1 1.0
C3A A:HEM285 4.3 18.1 1.0
C2C A:HEM285 4.3 12.3 1.0
C3C A:HEM285 4.3 16.4 1.0
NE2 A:HIS200 4.4 17.4 1.0
CE1 A:HIS200 4.4 17.6 1.0
CG A:HIS229 4.4 14.4 1.0
CD1 A:LEU233 4.5 16.1 1.0

Iron binding site 3 out of 4 in 1o1p

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Iron binding site 3 out of 4 in the Deoxy Hemoglobin (A-Gly-C:V1M; B,D:V1M,C93A,N108K)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Deoxy Hemoglobin (A-Gly-C:V1M; B,D:V1M,C93A,N108K) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe147

b:13.0
occ:1.00
FE B:HEM147 0.0 13.0 1.0
ND B:HEM147 2.0 12.6 1.0
NC B:HEM147 2.0 11.4 1.0
NA B:HEM147 2.0 12.8 1.0
NB B:HEM147 2.0 13.7 1.0
NE2 B:HIS92 2.2 10.1 1.0
CE1 B:HIS92 3.0 13.9 1.0
C4D B:HEM147 3.1 19.4 1.0
C4C B:HEM147 3.1 12.3 1.0
C1D B:HEM147 3.1 17.3 1.0
C1B B:HEM147 3.1 14.6 1.0
C4B B:HEM147 3.1 12.5 1.0
C4A B:HEM147 3.1 17.0 1.0
C1C B:HEM147 3.1 12.7 1.0
C1A B:HEM147 3.1 20.4 1.0
CD2 B:HIS92 3.3 9.3 1.0
CHA B:HEM147 3.4 20.9 1.0
CHD B:HEM147 3.4 14.9 1.0
CHB B:HEM147 3.4 15.8 1.0
CHC B:HEM147 3.4 10.0 1.0
CG2 B:VAL67 4.2 14.0 1.0
ND1 B:HIS92 4.2 15.3 1.0
NE2 B:HIS63 4.2 24.2 1.0
C3D B:HEM147 4.3 18.4 1.0
C2D B:HEM147 4.3 16.0 1.0
C2B B:HEM147 4.3 9.4 1.0
C2C B:HEM147 4.3 10.8 1.0
C2A B:HEM147 4.3 21.4 1.0
C3C B:HEM147 4.3 11.1 1.0
C3A B:HEM147 4.3 22.0 1.0
C3B B:HEM147 4.3 15.2 1.0
CG B:HIS92 4.3 14.9 1.0
CE1 B:HIS63 4.5 22.1 1.0
CD1 B:LEU96 5.0 11.8 1.0

Iron binding site 4 out of 4 in 1o1p

Go back to Iron Binding Sites List in 1o1p
Iron binding site 4 out of 4 in the Deoxy Hemoglobin (A-Gly-C:V1M; B,D:V1M,C93A,N108K)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Deoxy Hemoglobin (A-Gly-C:V1M; B,D:V1M,C93A,N108K) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe147

b:13.9
occ:1.00
FE D:HEM147 0.0 13.9 1.0
ND D:HEM147 2.0 13.9 1.0
NC D:HEM147 2.0 11.4 1.0
NA D:HEM147 2.0 13.2 1.0
NB D:HEM147 2.1 15.2 1.0
NE2 D:HIS92 2.2 11.2 1.0
CE1 D:HIS92 3.0 13.9 1.0
C4B D:HEM147 3.1 13.4 1.0
C4D D:HEM147 3.1 19.2 1.0
C4C D:HEM147 3.1 13.7 1.0
C1B D:HEM147 3.1 15.0 1.0
C1D D:HEM147 3.1 18.0 1.0
C1C D:HEM147 3.1 12.8 1.0
C1A D:HEM147 3.1 17.8 1.0
C4A D:HEM147 3.1 16.8 1.0
CD2 D:HIS92 3.3 8.0 1.0
CHA D:HEM147 3.4 20.2 1.0
CHC D:HEM147 3.4 10.9 1.0
CHD D:HEM147 3.4 14.2 1.0
CHB D:HEM147 3.4 15.1 1.0
ND1 D:HIS92 4.2 13.8 1.0
NE2 D:HIS63 4.2 23.4 1.0
CG2 D:VAL67 4.3 16.2 1.0
C2B D:HEM147 4.3 10.6 1.0
C3B D:HEM147 4.3 13.5 1.0
C3D D:HEM147 4.3 18.8 1.0
C2C D:HEM147 4.3 11.1 1.0
C2D D:HEM147 4.3 16.3 1.0
C2A D:HEM147 4.3 21.0 1.0
C3A D:HEM147 4.3 20.9 1.0
C3C D:HEM147 4.3 10.2 1.0
CG D:HIS92 4.3 12.8 1.0
CE1 D:HIS63 4.7 23.6 1.0
CD1 D:LEU96 4.8 12.1 1.0

Reference:

E.A.Brucker, N/A. N/A N/A.
Page generated: Sat Aug 3 12:08:05 2024

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