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Iron in PDB 1prc: Crystallographic Refinement at 2.3 Angstroms Resolution and Refined Model of the Photosynthetic Reaction Center From Rhodopseudomonas Viridis

Protein crystallography data

The structure of Crystallographic Refinement at 2.3 Angstroms Resolution and Refined Model of the Photosynthetic Reaction Center From Rhodopseudomonas Viridis, PDB code: 1prc was solved by J.Deisenhofer, O.Epp, K.Miki, R.Huber, H.Michel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.99 / 2.30
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 223.500, 223.500, 113.600, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Other elements in 1prc:

The structure of Crystallographic Refinement at 2.3 Angstroms Resolution and Refined Model of the Photosynthetic Reaction Center From Rhodopseudomonas Viridis also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystallographic Refinement at 2.3 Angstroms Resolution and Refined Model of the Photosynthetic Reaction Center From Rhodopseudomonas Viridis (pdb code 1prc). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 5 binding sites of Iron where determined in the Crystallographic Refinement at 2.3 Angstroms Resolution and Refined Model of the Photosynthetic Reaction Center From Rhodopseudomonas Viridis, PDB code: 1prc:
Jump to Iron binding site number: 1; 2; 3; 4; 5;

Iron binding site 1 out of 5 in 1prc

Go back to Iron Binding Sites List in 1prc
Iron binding site 1 out of 5 in the Crystallographic Refinement at 2.3 Angstroms Resolution and Refined Model of the Photosynthetic Reaction Center From Rhodopseudomonas Viridis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystallographic Refinement at 2.3 Angstroms Resolution and Refined Model of the Photosynthetic Reaction Center From Rhodopseudomonas Viridis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe609

b:22.8
occ:1.00
 FE C:HEM609 0.0 22.8 1.0
NE2 C:HIS91 1.9 23.9 1.0
NB C:HEM609 2.0 22.1 1.0
NA C:HEM609 2.0 20.4 1.0
NC C:HEM609 2.0 26.1 1.0
ND C:HEM609 2.1 23.0 1.0
SD C:MET74 2.3 24.3 1.0
CE1 C:HIS91 2.8 33.5 1.0
CD2 C:HIS91 2.9 25.8 1.0
C1B C:HEM609 2.9 27.7 1.0
C4A C:HEM609 2.9 27.5 1.0
C4C C:HEM609 3.0 15.7 1.0
C1D C:HEM609 3.0 26.0 1.0
C1A C:HEM609 3.0 18.5 1.0
C1C C:HEM609 3.0 32.3 1.0
C4B C:HEM609 3.1 24.4 1.0
C4D C:HEM609 3.1 21.7 1.0
CHB C:HEM609 3.3 15.4 1.0
CHD C:HEM609 3.3 24.8 1.0
CHA C:HEM609 3.4 21.9 1.0
CHC C:HEM609 3.5 33.6 1.0
CE C:MET74 3.5 4.9 1.0
CG C:MET74 3.7 22.9 1.0
ND1 C:HIS91 4.0 35.9 1.0
CG C:HIS91 4.0 17.7 1.0
C3C C:HEM609 4.1 21.7 1.0
C2B C:HEM609 4.1 26.1 1.0
C3A C:HEM609 4.2 29.9 1.0
C2C C:HEM609 4.2 26.8 1.0
C2A C:HEM609 4.2 28.0 1.0
C3B C:HEM609 4.2 20.8 1.0
C2D C:HEM609 4.2 31.1 1.0
C3D C:HEM609 4.3 21.5 1.0
CB C:MET74 4.5 17.5 1.0

Iron binding site 2 out of 5 in 1prc

Go back to Iron Binding Sites List in 1prc
Iron binding site 2 out of 5 in the Crystallographic Refinement at 2.3 Angstroms Resolution and Refined Model of the Photosynthetic Reaction Center From Rhodopseudomonas Viridis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystallographic Refinement at 2.3 Angstroms Resolution and Refined Model of the Photosynthetic Reaction Center From Rhodopseudomonas Viridis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe610

b:23.1
occ:1.00
 FE C:HEM610 0.0 23.1 1.0
NE2 C:HIS136 2.0 19.8 1.0
NC C:HEM610 2.0 20.5 1.0
NA C:HEM610 2.0 18.9 1.0
ND C:HEM610 2.0 18.2 1.0
NB C:HEM610 2.1 12.4 1.0
SD C:MET110 2.3 22.0 1.0
CD2 C:HIS136 2.9 19.2 1.0
C4C C:HEM610 3.0 25.2 1.0
CE1 C:HIS136 3.0 15.3 1.0
C1C C:HEM610 3.0 21.4 1.0
C4A C:HEM610 3.0 21.5 1.0
C1D C:HEM610 3.0 22.0 1.0
C1A C:HEM610 3.0 26.9 1.0
C4D C:HEM610 3.0 23.6 1.0
C1B C:HEM610 3.1 13.3 1.0
C4B C:HEM610 3.1 21.1 1.0
CHB C:HEM610 3.4 21.2 1.0
CHD C:HEM610 3.4 15.1 1.0
CHC C:HEM610 3.4 23.4 1.0
CHA C:HEM610 3.5 26.9 1.0
CE C:MET110 3.5 19.2 1.0
CG C:MET110 3.6 16.8 1.0
C3C C:HEM610 4.1 24.5 1.0
ND1 C:HIS136 4.1 22.6 1.0
CG C:HIS136 4.1 19.2 1.0
C2C C:HEM610 4.1 18.2 1.0
C3A C:HEM610 4.2 29.8 1.0
C2A C:HEM610 4.2 29.7 1.0
C2D C:HEM610 4.2 18.0 1.0
C3D C:HEM610 4.2 19.4 1.0
C2B C:HEM610 4.3 20.2 1.0
CB C:MET110 4.3 13.4 1.0
C3B C:HEM610 4.3 16.7 1.0

Iron binding site 3 out of 5 in 1prc

Go back to Iron Binding Sites List in 1prc
Iron binding site 3 out of 5 in the Crystallographic Refinement at 2.3 Angstroms Resolution and Refined Model of the Photosynthetic Reaction Center From Rhodopseudomonas Viridis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystallographic Refinement at 2.3 Angstroms Resolution and Refined Model of the Photosynthetic Reaction Center From Rhodopseudomonas Viridis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe611

b:21.4
occ:1.00
 FE C:HEM611 0.0 21.4 1.0
NB C:HEM611 1.9 10.2 1.0
NE2 C:HIS248 2.0 11.6 1.0
NA C:HEM611 2.0 18.6 1.0
ND C:HEM611 2.0 21.9 1.0
NC C:HEM611 2.1 16.5 1.0
SD C:MET233 2.2 13.6 1.0
CD2 C:HIS248 2.9 10.6 1.0
C1B C:HEM611 2.9 22.5 1.0
C4B C:HEM611 3.0 12.7 1.0
C4A C:HEM611 3.0 18.4 1.0
CE1 C:HIS248 3.0 9.2 1.0
C1D C:HEM611 3.0 20.6 1.0
C4C C:HEM611 3.1 15.7 1.0
C1A C:HEM611 3.1 21.0 1.0
C1C C:HEM611 3.1 9.0 1.0
C4D C:HEM611 3.1 20.1 1.0
CE C:MET233 3.2 7.0 1.0
CHB C:HEM611 3.3 11.4 1.0
CG C:MET233 3.4 16.2 1.0
CHD C:HEM611 3.4 15.1 1.0
CHC C:HEM611 3.4 19.6 1.0
CHA C:HEM611 3.5 15.6 1.0
CG C:HIS248 4.0 10.4 1.0
ND1 C:HIS248 4.1 6.9 1.0
C3B C:HEM611 4.1 6.0 1.0
CB C:MET233 4.1 12.4 1.0
C2B C:HEM611 4.1 13.7 1.0
C3A C:HEM611 4.2 20.4 1.0
C2D C:HEM611 4.2 17.4 1.0
C2A C:HEM611 4.2 12.3 1.0
C3D C:HEM611 4.3 13.0 1.0
C2C C:HEM611 4.3 12.0 1.0
C3C C:HEM611 4.3 15.5 1.0

Iron binding site 4 out of 5 in 1prc

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Iron binding site 4 out of 5 in the Crystallographic Refinement at 2.3 Angstroms Resolution and Refined Model of the Photosynthetic Reaction Center From Rhodopseudomonas Viridis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystallographic Refinement at 2.3 Angstroms Resolution and Refined Model of the Photosynthetic Reaction Center From Rhodopseudomonas Viridis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe612

b:25.2
occ:1.00
 FE C:HEM612 0.0 25.2 1.0
NE2 C:HIS309 1.9 9.7 1.0
NE2 C:HIS124 2.0 16.7 1.0
ND C:HEM612 2.0 23.8 1.0
NB C:HEM612 2.0 12.6 1.0
NC C:HEM612 2.1 28.3 1.0
NA C:HEM612 2.1 24.6 1.0
CE1 C:HIS309 2.5 16.9 1.0
CE1 C:HIS124 2.6 20.8 1.0
C4D C:HEM612 3.0 21.6 1.0
C4B C:HEM612 3.0 15.4 1.0
C1D C:HEM612 3.0 21.0 1.0
C1C C:HEM612 3.0 22.5 1.0
C1A C:HEM612 3.0 31.8 1.0
C1B C:HEM612 3.1 15.8 1.0
C4C C:HEM612 3.1 27.8 1.0
C4A C:HEM612 3.1 24.4 1.0
CD2 C:HIS309 3.2 15.1 1.0
CD2 C:HIS124 3.2 26.9 1.0
CHC C:HEM612 3.4 20.9 1.0
CHA C:HEM612 3.4 26.5 1.0
CHD C:HEM612 3.4 22.9 1.0
CHB C:HEM612 3.5 10.1 1.0
ND1 C:HIS309 3.8 16.0 1.0
ND1 C:HIS124 3.8 7.7 1.0
CG C:HIS309 4.1 12.4 1.0
CG C:HIS124 4.1 11.5 1.0
C3D C:HEM612 4.2 24.0 1.0
C2D C:HEM612 4.2 28.6 1.0
C2C C:HEM612 4.2 24.0 1.0
C2B C:HEM612 4.3 24.6 1.0
C3B C:HEM612 4.3 24.6 1.0
C2A C:HEM612 4.3 21.1 1.0
C3C C:HEM612 4.3 26.7 1.0
C3A C:HEM612 4.3 25.1 1.0

Iron binding site 5 out of 5 in 1prc

Go back to Iron Binding Sites List in 1prc
Iron binding site 5 out of 5 in the Crystallographic Refinement at 2.3 Angstroms Resolution and Refined Model of the Photosynthetic Reaction Center From Rhodopseudomonas Viridis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Crystallographic Refinement at 2.3 Angstroms Resolution and Refined Model of the Photosynthetic Reaction Center From Rhodopseudomonas Viridis within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Fe607

b:19.4
occ:1.00
 NE2 L:HIS190 2.0 10.9 1.0
OE2 M:GLU232 2.0 7.8 1.0
NE2 M:HIS264 2.0 3.2 1.0
NE2 M:HIS217 2.1 7.0 1.0
OE1 M:GLU232 2.2 13.5 1.0
CD M:GLU232 2.4 12.2 1.0
NE2 L:HIS230 2.4 9.6 1.0
CE1 L:HIS190 3.0 13.4 1.0
CE1 M:HIS217 3.0 10.2 1.0
CD2 L:HIS190 3.0 22.5 1.0
CE1 M:HIS264 3.0 17.2 1.0
CD2 M:HIS264 3.1 10.1 1.0
CD2 M:HIS217 3.2 13.2 1.0
CE1 L:HIS230 3.4 19.1 1.0
CD2 L:HIS230 3.4 7.0 1.0
CG M:GLU232 3.9 4.5 1.0
CG L:HIS190 4.1 13.1 1.0
ND1 L:HIS190 4.2 5.9 1.0
ND1 M:HIS217 4.2 12.7 1.0
ND1 M:HIS264 4.2 10.6 1.0
CG M:HIS264 4.2 14.9 1.0
CG M:HIS217 4.3 19.6 1.0
CG1 L:ILE194 4.5 14.2 1.0
CG L:HIS230 4.5 8.3 1.0
ND1 L:HIS230 4.5 9.2 1.0
O M:HOH659 4.6 21.8 1.0
CG1 M:ILE221 4.7 3.0 1.0
CB M:GLU232 4.8 3.0 1.0
CD1 L:ILE194 4.9 12.7 1.0

Reference:

J.Deisenhofer, O.Epp, I.Sinning, H.Michel. Crystallographic Refinement at 2.3 A Resolution and Refined Model of the Photosynthetic Reaction Centre From Rhodopseudomonas Viridis. J.Mol.Biol. V. 246 429 1995.
ISSN: ISSN 0022-2836
PubMed: 7877166
DOI: 10.1006/JMBI.1994.0097
Page generated: Sat Aug 3 13:12:52 2024

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