Atomistry » Iron » PDB 1q5e-1qom » 1q9i
Atomistry »
  Iron »
    PDB 1q5e-1qom »
      1q9i »

Iron in PDB 1q9i: The A251C:S430C Double Mutant of Flavocytochrome C3 From Shewanella Frigidimarina

Enzymatic activity of The A251C:S430C Double Mutant of Flavocytochrome C3 From Shewanella Frigidimarina

All present enzymatic activity of The A251C:S430C Double Mutant of Flavocytochrome C3 From Shewanella Frigidimarina:
1.3.99.1;

Protein crystallography data

The structure of The A251C:S430C Double Mutant of Flavocytochrome C3 From Shewanella Frigidimarina, PDB code: 1q9i was solved by E.L.Rothery, C.G.Mowat, C.S.Miles, M.D.Walkinshaw, G.A.Reid, S.K.Chapman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.00 / 1.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 45.290, 91.885, 78.310, 90.00, 91.50, 90.00
R / Rfree (%) 15.5 / 19.7

Other elements in 1q9i:

The structure of The A251C:S430C Double Mutant of Flavocytochrome C3 From Shewanella Frigidimarina also contains other interesting chemical elements:

Sodium (Na) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the The A251C:S430C Double Mutant of Flavocytochrome C3 From Shewanella Frigidimarina (pdb code 1q9i). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the The A251C:S430C Double Mutant of Flavocytochrome C3 From Shewanella Frigidimarina, PDB code: 1q9i:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 1q9i

Go back to Iron Binding Sites List in 1q9i
Iron binding site 1 out of 4 in the The A251C:S430C Double Mutant of Flavocytochrome C3 From Shewanella Frigidimarina


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The A251C:S430C Double Mutant of Flavocytochrome C3 From Shewanella Frigidimarina within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe801

b:15.2
occ:1.00
 FE A:HEM801 0.0 15.2 1.0
NE2 A:HIS75 2.0 18.3 1.0
NE2 A:HIS18 2.0 15.3 1.0
NA A:HEM801 2.0 15.4 1.0
NC A:HEM801 2.0 16.9 1.0
ND A:HEM801 2.0 13.3 1.0
NB A:HEM801 2.1 13.3 1.0
CE1 A:HIS18 2.9 14.0 1.0
CE1 A:HIS75 2.9 17.3 1.0
CD2 A:HIS75 3.0 15.9 1.0
CD2 A:HIS18 3.0 15.8 1.0
C4A A:HEM801 3.0 14.0 1.0
C1D A:HEM801 3.0 15.4 1.0
C4C A:HEM801 3.0 17.8 1.0
C4D A:HEM801 3.0 13.9 1.0
C1B A:HEM801 3.1 16.4 1.0
C1A A:HEM801 3.1 16.1 1.0
C1C A:HEM801 3.1 18.1 1.0
C4B A:HEM801 3.1 17.6 1.0
CHD A:HEM801 3.4 15.8 1.0
CHB A:HEM801 3.4 15.3 1.0
CHC A:HEM801 3.4 17.9 1.0
CHA A:HEM801 3.4 14.5 1.0
ND1 A:HIS18 4.1 15.1 1.0
ND1 A:HIS75 4.1 16.8 1.0
CG A:HIS75 4.1 17.9 1.0
CG A:HIS18 4.1 16.1 1.0
C3D A:HEM801 4.3 14.1 1.0
C3A A:HEM801 4.3 17.1 1.0
C2B A:HEM801 4.3 17.3 1.0
C2D A:HEM801 4.3 14.2 1.0
C3B A:HEM801 4.3 17.4 1.0
C2C A:HEM801 4.3 18.2 1.0
C3C A:HEM801 4.3 16.5 1.0
C2A A:HEM801 4.3 15.2 1.0
O A:HOH9992 4.8 27.2 1.0
CB A:ALA74 4.9 15.0 1.0

Iron binding site 2 out of 4 in 1q9i

Go back to Iron Binding Sites List in 1q9i
Iron binding site 2 out of 4 in the The A251C:S430C Double Mutant of Flavocytochrome C3 From Shewanella Frigidimarina


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The A251C:S430C Double Mutant of Flavocytochrome C3 From Shewanella Frigidimarina within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe802

b:18.2
occ:1.00
 FE A:HEM802 0.0 18.2 1.0
NE2 A:HIS40 2.0 18.8 1.0
NC A:HEM802 2.0 19.9 1.0
NA A:HEM802 2.0 19.3 1.0
NB A:HEM802 2.0 14.0 1.0
ND A:HEM802 2.0 15.4 1.0
NE2 A:HIS8 2.0 18.1 1.0
CE1 A:HIS40 2.9 16.9 1.0
C4D A:HEM802 3.0 17.6 1.0
CD2 A:HIS40 3.0 17.2 1.0
CE1 A:HIS8 3.0 15.8 1.0
C4B A:HEM802 3.0 15.4 1.0
C1D A:HEM802 3.0 19.2 1.0
C1A A:HEM802 3.0 17.1 1.0
C1B A:HEM802 3.0 16.8 1.0
C1C A:HEM802 3.0 17.9 1.0
C4C A:HEM802 3.0 18.3 1.0
CD2 A:HIS8 3.1 20.3 1.0
C4A A:HEM802 3.1 18.0 1.0
CHA A:HEM802 3.3 18.2 1.0
CHC A:HEM802 3.4 16.9 1.0
CHD A:HEM802 3.4 20.0 1.0
CHB A:HEM802 3.4 19.6 1.0
ND1 A:HIS40 4.1 17.9 1.0
CG A:HIS40 4.1 18.3 1.0
ND1 A:HIS8 4.1 20.0 1.0
CG A:HIS8 4.2 19.0 1.0
C3B A:HEM802 4.2 15.7 1.0
C3D A:HEM802 4.2 21.0 1.0
C2B A:HEM802 4.2 15.6 1.0
C2D A:HEM802 4.2 21.3 1.0
C2A A:HEM802 4.3 19.0 1.0
C2C A:HEM802 4.3 20.2 1.0
C3A A:HEM802 4.3 18.9 1.0
C3C A:HEM802 4.3 21.4 1.0

Iron binding site 3 out of 4 in 1q9i

Go back to Iron Binding Sites List in 1q9i
Iron binding site 3 out of 4 in the The A251C:S430C Double Mutant of Flavocytochrome C3 From Shewanella Frigidimarina


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of The A251C:S430C Double Mutant of Flavocytochrome C3 From Shewanella Frigidimarina within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe803

b:14.8
occ:1.00
 FE A:HEM803 0.0 14.8 1.0
NB A:HEM803 2.0 14.9 1.0
NA A:HEM803 2.0 14.0 1.0
NE2 A:HIS72 2.0 12.5 1.0
ND A:HEM803 2.0 15.9 1.0
NE2 A:HIS58 2.0 14.4 1.0
NC A:HEM803 2.0 11.7 1.0
CE1 A:HIS58 3.0 15.7 1.0
CE1 A:HIS72 3.0 14.0 1.0
C1A A:HEM803 3.0 19.8 1.0
C1B A:HEM803 3.0 14.1 1.0
C4B A:HEM803 3.0 12.4 1.0
C4A A:HEM803 3.0 17.2 1.0
CD2 A:HIS72 3.0 13.3 1.0
C1C A:HEM803 3.0 13.0 1.0
C4C A:HEM803 3.0 14.3 1.0
C4D A:HEM803 3.0 16.7 1.0
CD2 A:HIS58 3.1 14.8 1.0
C1D A:HEM803 3.1 16.0 1.0
CHA A:HEM803 3.4 16.1 1.0
CHB A:HEM803 3.4 16.5 1.0
CHC A:HEM803 3.4 13.4 1.0
CHD A:HEM803 3.5 13.3 1.0
ND1 A:HIS58 4.1 13.5 1.0
ND1 A:HIS72 4.1 13.1 1.0
CG A:HIS72 4.2 12.9 1.0
CG A:HIS58 4.2 13.6 1.0
C3A A:HEM803 4.2 18.9 1.0
C2A A:HEM803 4.2 19.2 1.0
C2B A:HEM803 4.2 15.4 1.0
C3C A:HEM803 4.2 11.5 1.0
C2C A:HEM803 4.3 11.9 1.0
C3B A:HEM803 4.3 15.1 1.0
C3D A:HEM803 4.3 16.8 1.0
C2D A:HEM803 4.3 16.4 1.0
CG1 A:VAL46 4.9 16.3 1.0

Iron binding site 4 out of 4 in 1q9i

Go back to Iron Binding Sites List in 1q9i
Iron binding site 4 out of 4 in the The A251C:S430C Double Mutant of Flavocytochrome C3 From Shewanella Frigidimarina


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of The A251C:S430C Double Mutant of Flavocytochrome C3 From Shewanella Frigidimarina within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe804

b:11.3
occ:1.00
 FE A:HEM804 0.0 11.3 1.0
NE2 A:HIS86 2.0 11.1 1.0
NA A:HEM804 2.0 9.5 1.0
NE2 A:HIS61 2.0 12.0 1.0
NC A:HEM804 2.0 10.4 1.0
NB A:HEM804 2.1 10.9 1.0
ND A:HEM804 2.1 11.3 1.0
CE1 A:HIS86 3.0 10.7 1.0
CE1 A:HIS61 3.0 11.9 1.0
CD2 A:HIS86 3.0 11.8 1.0
C1A A:HEM804 3.0 13.7 1.0
C4A A:HEM804 3.0 12.6 1.0
CD2 A:HIS61 3.0 9.8 1.0
C1C A:HEM804 3.1 11.6 1.0
C4C A:HEM804 3.1 10.7 1.0
C1B A:HEM804 3.1 11.9 1.0
C4D A:HEM804 3.1 12.1 1.0
C4B A:HEM804 3.1 9.8 1.0
C1D A:HEM804 3.1 12.1 1.0
CHA A:HEM804 3.4 13.5 1.0
CHC A:HEM804 3.4 10.0 1.0
CHB A:HEM804 3.4 12.4 1.0
CHD A:HEM804 3.5 9.8 1.0
ND1 A:HIS86 4.1 12.7 1.0
ND1 A:HIS61 4.1 11.8 1.0
CG A:HIS86 4.2 11.6 1.0
CG A:HIS61 4.2 10.1 1.0
C3A A:HEM804 4.2 14.2 1.0
C2A A:HEM804 4.2 12.7 1.0
C2C A:HEM804 4.2 10.3 1.0
C3C A:HEM804 4.3 10.9 1.0
C2B A:HEM804 4.3 11.1 1.0
C3B A:HEM804 4.3 10.9 1.0
C2D A:HEM804 4.3 13.0 1.0
C3D A:HEM804 4.3 11.7 1.0

Reference:

E.L.Rothery, C.G.Mowat, C.S.Miles, S.Mott, M.D.Walkinshaw, G.A.Reid, S.K.Chapman. Probing Domain Mobility in A Flavocytochrome Biochemistry V. 42 4983 2004.
ISSN: ISSN 0006-2960
PubMed: 15109257
DOI: 10.1021/BI030261W
Page generated: Sat Aug 3 13:24:08 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy