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Iron in PDB 1t2b: Crystal Structure of Cytochrome P450CIN Complexed with Its Substrate 1,8-Cineole

Protein crystallography data

The structure of Crystal Structure of Cytochrome P450CIN Complexed with Its Substrate 1,8-Cineole, PDB code: 1t2b was solved by Y.T.Meharenna, H.Li, D.B.Hawkes, A.G.Pearson, J.De Voss, T.L.Poulos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.43 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 62.400, 68.960, 105.550, 90.00, 95.61, 90.00
R / Rfree (%) 22.9 / 26.3

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Cytochrome P450CIN Complexed with Its Substrate 1,8-Cineole (pdb code 1t2b). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Cytochrome P450CIN Complexed with Its Substrate 1,8-Cineole, PDB code: 1t2b:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 1t2b

Go back to Iron Binding Sites List in 1t2b
Iron binding site 1 out of 2 in the Crystal Structure of Cytochrome P450CIN Complexed with Its Substrate 1,8-Cineole


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Cytochrome P450CIN Complexed with Its Substrate 1,8-Cineole within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe450

b:11.9
occ:1.00
FE A:HEM450 0.0 11.9 1.0
NC A:HEM450 2.0 14.1 1.0
NB A:HEM450 2.0 12.4 1.0
NA A:HEM450 2.0 12.0 1.0
ND A:HEM450 2.1 12.7 1.0
SG A:CYS347 2.3 13.5 1.0
C1C A:HEM450 3.1 12.9 1.0
C4B A:HEM450 3.1 11.3 1.0
C4C A:HEM450 3.1 13.2 1.0
C4D A:HEM450 3.1 12.4 1.0
C1B A:HEM450 3.1 11.4 1.0
C1A A:HEM450 3.1 11.7 1.0
C1D A:HEM450 3.1 12.9 1.0
C4A A:HEM450 3.1 11.6 1.0
CB A:CYS347 3.4 15.5 1.0
CHC A:HEM450 3.4 12.4 1.0
CHA A:HEM450 3.5 12.5 1.0
CHB A:HEM450 3.5 11.6 1.0
CHD A:HEM450 3.5 13.5 1.0
CA A:CYS347 3.9 14.7 1.0
C3B A:HEM450 4.3 11.7 1.0
C2C A:HEM450 4.3 13.4 1.0
C2B A:HEM450 4.3 10.7 1.0
C3C A:HEM450 4.3 13.9 1.0
C3D A:HEM450 4.3 13.4 1.0
C2D A:HEM450 4.3 13.7 1.0
C3A A:HEM450 4.4 11.9 1.0
C2A A:HEM450 4.4 12.3 1.0
ND2 A:ASN242 4.5 11.8 1.0
N A:LEU348 4.6 15.0 1.0
C A:CYS347 4.6 15.0 1.0
N A:GLY349 4.6 15.0 1.0
C7 A:CNL500 4.9 20.8 1.0

Iron binding site 2 out of 2 in 1t2b

Go back to Iron Binding Sites List in 1t2b
Iron binding site 2 out of 2 in the Crystal Structure of Cytochrome P450CIN Complexed with Its Substrate 1,8-Cineole


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Cytochrome P450CIN Complexed with Its Substrate 1,8-Cineole within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe450

b:11.4
occ:1.00
FE B:HEM450 0.0 11.4 1.0
NC B:HEM450 2.0 12.8 1.0
NB B:HEM450 2.0 11.4 1.0
NA B:HEM450 2.0 11.6 1.0
ND B:HEM450 2.0 12.1 1.0
SG B:CYS347 2.3 12.8 1.0
C1B B:HEM450 3.1 10.4 1.0
C1C B:HEM450 3.1 11.7 1.0
C1A B:HEM450 3.1 11.1 1.0
C4D B:HEM450 3.1 12.3 1.0
C4C B:HEM450 3.1 12.2 1.0
C4B B:HEM450 3.1 10.2 1.0
C4A B:HEM450 3.1 10.8 1.0
C1D B:HEM450 3.1 12.0 1.0
CB B:CYS347 3.4 14.7 1.0
CHA B:HEM450 3.4 11.4 1.0
CHC B:HEM450 3.4 11.6 1.0
CHB B:HEM450 3.5 10.9 1.0
CHD B:HEM450 3.5 12.8 1.0
CA B:CYS347 4.0 14.0 1.0
C2B B:HEM450 4.3 10.3 1.0
C3B B:HEM450 4.3 11.4 1.0
C2C B:HEM450 4.3 12.3 1.0
C3D B:HEM450 4.3 12.8 1.0
C3C B:HEM450 4.3 12.7 1.0
C3A B:HEM450 4.3 11.4 1.0
C2D B:HEM450 4.3 12.6 1.0
C2A B:HEM450 4.3 11.3 1.0
N B:LEU348 4.6 13.3 1.0
ND2 B:ASN242 4.6 13.9 1.0
N B:GLY349 4.7 14.1 1.0
C B:CYS347 4.7 13.8 1.0
C7 B:CNL500 4.8 21.1 1.0
C2 B:CNL500 5.0 21.3 1.0

Reference:

Y.T.Meharenna, H.Li, D.B.Hawkes, A.G.Pearson, J.De Voss, T.L.Poulos. Crystal Structure of P450CIN in A Complex with Its Substrate, 1,8-Cineole, A Close Structural Homologue to D-Camphor, the Substrate For P450CAM Biochemistry V. 43 9487 2004.
ISSN: ISSN 0006-2960
PubMed: 15260491
DOI: 10.1021/BI049293P
Page generated: Sat Aug 3 15:07:56 2024

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