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Iron in PDB 1u7s: Crystal Structure of Native Sperm Whale Myoglobin From Low Ionic Strength Enviroment (Form 1)

Protein crystallography data

The structure of Crystal Structure of Native Sperm Whale Myoglobin From Low Ionic Strength Enviroment (Form 1), PDB code: 1u7s was solved by W.Zhang, G.N.Phillips Jr., with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.40
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 73.730, 73.730, 96.710, 90.00, 90.00, 120.00
R / Rfree (%) 14.3 / 17.9

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Native Sperm Whale Myoglobin From Low Ionic Strength Enviroment (Form 1) (pdb code 1u7s). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Native Sperm Whale Myoglobin From Low Ionic Strength Enviroment (Form 1), PDB code: 1u7s:

Iron binding site 1 out of 1 in 1u7s

Go back to Iron Binding Sites List in 1u7s
Iron binding site 1 out of 1 in the Crystal Structure of Native Sperm Whale Myoglobin From Low Ionic Strength Enviroment (Form 1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Native Sperm Whale Myoglobin From Low Ionic Strength Enviroment (Form 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe154

b:11.4
occ:1.00
FE A:HEM154 0.0 11.4 1.0
ND A:HEM154 2.0 11.4 1.0
NC A:HEM154 2.0 11.0 1.0
NA A:HEM154 2.0 11.9 1.0
NB A:HEM154 2.0 11.0 1.0
NE2 A:HIS93 2.1 13.0 1.0
O A:HOH1001 2.2 11.9 1.0
CE1 A:HIS93 3.0 12.2 1.0
C1C A:HEM154 3.1 11.2 1.0
C1A A:HEM154 3.1 11.5 1.0
C4C A:HEM154 3.1 11.0 1.0
C1D A:HEM154 3.1 11.3 1.0
C4D A:HEM154 3.1 12.8 1.0
C4B A:HEM154 3.1 10.6 1.0
C4A A:HEM154 3.1 11.7 1.0
C1B A:HEM154 3.1 10.2 1.0
CD2 A:HIS93 3.2 14.6 1.0
CHA A:HEM154 3.4 13.6 1.0
CHD A:HEM154 3.4 13.7 1.0
CHC A:HEM154 3.4 11.1 1.0
CHB A:HEM154 3.4 11.7 1.0
ND1 A:HIS93 4.2 14.9 1.0
CG A:HIS93 4.3 13.1 1.0
C3D A:HEM154 4.3 13.1 1.0
C2C A:HEM154 4.3 11.9 1.0
C3C A:HEM154 4.3 10.5 1.0
C2D A:HEM154 4.3 12.3 1.0
C2A A:HEM154 4.3 12.6 1.0
C3A A:HEM154 4.3 13.0 1.0
C2B A:HEM154 4.3 11.5 1.0
C3B A:HEM154 4.3 11.9 1.0
NE2 A:HIS64 4.4 16.0 1.0
CG2 A:VAL68 4.7 14.9 1.0
CE1 A:HIS64 4.9 18.4 1.0
CD2 A:HIS97 5.0 15.5 1.0

Reference:

D.A.Kondrashov, W.Zhang, R.Aranda, B.Stec, G.N.Phillips Jr.. Sampling of the Native Conformational Ensemble of Myoglobin Via Structures in Different Crystalline Environments. Proteins V. 70 353 2008.
ISSN: ISSN 0887-3585
PubMed: 17680690
DOI: 10.1002/PROT.21499
Page generated: Sat Aug 3 15:25:03 2024

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