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Iron in PDB 1yjh: Crystal Structure of Cimex Nitrophorin Ferrous No Complex

Protein crystallography data

The structure of Crystal Structure of Cimex Nitrophorin Ferrous No Complex, PDB code: 1yjh was solved by A.Weichsel, H.Badgandi, W.R.Montfort, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.65
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 49.000, 41.560, 65.370, 90.00, 95.29, 90.00
R / Rfree (%) 20.3 / 25

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Cimex Nitrophorin Ferrous No Complex (pdb code 1yjh). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Cimex Nitrophorin Ferrous No Complex, PDB code: 1yjh:

Iron binding site 1 out of 1 in 1yjh

Go back to Iron Binding Sites List in 1yjh
Iron binding site 1 out of 1 in the Crystal Structure of Cimex Nitrophorin Ferrous No Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Cimex Nitrophorin Ferrous No Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe300

b:30.0
occ:1.00
FE A:HEM300 0.0 30.0 1.0
N A:NO298 1.9 34.9 1.0
NA A:HEM300 1.9 25.4 1.0
NB A:HEM300 2.0 26.7 1.0
ND A:HEM300 2.1 29.2 1.0
NC A:HEM300 2.2 28.3 1.0
O A:NO298 2.8 33.7 1.0
C1A A:HEM300 3.0 29.1 1.0
C1B A:HEM300 3.0 24.7 1.0
C4D A:HEM300 3.0 30.9 1.0
C4A A:HEM300 3.0 26.2 1.0
C4B A:HEM300 3.0 24.5 1.0
SG A:CYS60 3.1 35.8 1.0
C1C A:HEM300 3.2 26.2 1.0
C1D A:HEM300 3.2 31.1 1.0
C4C A:HEM300 3.2 28.1 1.0
CHA A:HEM300 3.3 27.5 1.0
CHB A:HEM300 3.4 24.7 1.0
CHC A:HEM300 3.4 27.9 1.0
CHD A:HEM300 3.5 30.4 1.0
CB A:CYS60 4.0 35.3 1.0
C2B A:HEM300 4.2 26.6 1.0
C3B A:HEM300 4.2 25.5 1.0
C2A A:HEM300 4.2 27.6 1.0
C3A A:HEM300 4.2 27.6 1.0
C3D A:HEM300 4.2 31.8 1.0
C2D A:HEM300 4.4 32.5 1.0
C3C A:HEM300 4.4 30.3 1.0
C2C A:HEM300 4.4 27.2 1.0
CD2 A:PHE49 4.7 39.1 1.0
NE2 A:GLN56 4.9 50.1 1.0

Reference:

A.Weichsel, H.Badgandi, W.R.Montfort. Crystal Structure of Cimex Nitrophorin No Complex To Be Published.
Page generated: Sat Aug 3 17:49:16 2024

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