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Iron in PDB 2bgv: X-Ray Structure of Ferric Cytochrome C-550 From Paracoccus Versutus

Protein crystallography data

The structure of X-Ray Structure of Ferric Cytochrome C-550 From Paracoccus Versutus, PDB code: 2bgv was solved by J.A.R.Worrall, A.-M.M.Van Roon, M.Ubbink, G.W.Canters, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.44 / 1.9
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 57.102, 57.102, 66.616, 90.00, 90.00, 90.00
R / Rfree (%) 15.8 / 19.1

Iron Binding Sites:

The binding sites of Iron atom in the X-Ray Structure of Ferric Cytochrome C-550 From Paracoccus Versutus (pdb code 2bgv). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the X-Ray Structure of Ferric Cytochrome C-550 From Paracoccus Versutus, PDB code: 2bgv:

Iron binding site 1 out of 1 in 2bgv

Go back to Iron Binding Sites List in 2bgv
Iron binding site 1 out of 1 in the X-Ray Structure of Ferric Cytochrome C-550 From Paracoccus Versutus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of X-Ray Structure of Ferric Cytochrome C-550 From Paracoccus Versutus within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Fe1121

b:16.6
occ:1.00
FE X:HEC1121 0.0 16.6 1.0
NB X:HEC1121 2.0 13.4 1.0
NE2 X:HIS19 2.0 16.0 1.0
ND X:HEC1121 2.0 14.0 1.0
NA X:HEC1121 2.0 14.1 1.0
NC X:HEC1121 2.1 14.1 1.0
SD X:MET100 2.4 16.1 1.0
CE1 X:HIS19 2.9 16.2 1.0
C1B X:HEC1121 3.0 15.6 1.0
C4B X:HEC1121 3.0 16.6 1.0
C4D X:HEC1121 3.0 15.0 1.0
C1D X:HEC1121 3.1 15.0 1.0
C4C X:HEC1121 3.1 15.6 1.0
C1A X:HEC1121 3.1 14.7 1.0
CD2 X:HIS19 3.1 13.7 1.0
C4A X:HEC1121 3.1 13.2 1.0
C1C X:HEC1121 3.1 16.7 1.0
CE X:MET100 3.4 17.4 1.0
CHA X:HEC1121 3.4 14.1 1.0
CHD X:HEC1121 3.4 15.4 1.0
CHC X:HEC1121 3.4 16.7 1.0
CHB X:HEC1121 3.4 14.8 1.0
CG X:MET100 3.5 15.8 1.0
ND1 X:HIS19 4.1 12.5 1.0
CG X:HIS19 4.2 14.6 1.0
C3B X:HEC1121 4.2 15.6 1.0
C2B X:HEC1121 4.2 13.4 1.0
C3D X:HEC1121 4.3 13.2 1.0
C3C X:HEC1121 4.3 14.1 1.0
C2D X:HEC1121 4.3 15.0 1.0
C3A X:HEC1121 4.3 14.6 1.0
C2A X:HEC1121 4.3 15.3 1.0
C2C X:HEC1121 4.3 14.0 1.0
CB X:MET100 4.3 17.3 1.0

Reference:

J.A.R.Worrall, A.-M.M.Van Roon, M.Ubbink, G.W.Canters. The Effect of Replacing the Axial Methionine Ligand with A Lysine Residue in Cytochrome C-550 From Paracoccus Versutus Assessed By X-Ray Crystallography and Unfolding. Febs J. V. 272 2441 2005.
ISSN: ISSN 1742-464X
PubMed: 15885094
DOI: 10.1111/J.1742-4658.2005.04664.X
Page generated: Sat Aug 3 19:36:34 2024

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