Iron in PDB 2bpn: Solution Structure of Desulfovibrio Vulgaris (Hildenborough) Ferricytochrome C3, uc(Nmr), 20 Structures

The binding sites of Iron atom in the Solution Structure of Desulfovibrio Vulgaris (Hildenborough) Ferricytochrome C3, uc(Nmr), 20 Structures (pdb code 2bpn). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Solution Structure of Desulfovibrio Vulgaris (Hildenborough) Ferricytochrome C3, uc(Nmr), 20 Structures, PDB code: 2bpn:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Solution Structure of Desulfovibrio Vulgaris (Hildenborough) Ferricytochrome C3, uc(Nmr), 20 Structures


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Solution Structure of Desulfovibrio Vulgaris (Hildenborough) Ferricytochrome C3, uc(Nmr), 20 Structures within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe108 b:0.0 occ:1.00 FE A:HEC108 0.0 0.0 1.0 NE2 A:HIS34 1.9 0.0 1.0 NB A:HEC108 2.0 0.0 1.0 NE2 A:HIS22 2.0 0.0 1.0 NC A:HEC108 2.0 0.0 1.0 NA A:HEC108 2.0 0.0 1.0 ND A:HEC108 2.1 0.0 1.0 CE1 A:HIS34 2.9 0.0 1.0 CD2 A:HIS34 2.9 0.0 1.0 C4B A:HEC108 3.0 0.0 1.0 CE1 A:HIS22 3.0 0.0 1.0 C1B A:HEC108 3.0 0.0 1.0 C1C A:HEC108 3.0 0.0 1.0 CD2 A:HIS22 3.0 0.0 1.0 C4A A:HEC108 3.1 0.0 1.0 C4C A:HEC108 3.1 0.0 1.0 C1A A:HEC108 3.1 0.0 1.0 C1D A:HEC108 3.1 0.0 1.0 C4D A:HEC108 3.1 0.0 1.0 HD2 A:HIS34 3.2 0.0 1.0 HE1 A:HIS34 3.2 0.0 1.0 HE1 A:HIS22 3.3 0.0 1.0 HD2 A:HIS22 3.3 0.0 1.0 CHC A:HEC108 3.4 0.0 1.0 CHB A:HEC108 3.4 0.0 1.0 CHD A:HEC108 3.5 0.0 1.0 CHA A:HEC108 3.5 0.0 1.0 HZ A:PHE20 3.9 0.0 1.0 HE1 A:PHE20 4.0 0.0 1.0 ND1 A:HIS34 4.1 0.0 1.0 CG A:HIS34 4.1 0.0 1.0 ND1 A:HIS22 4.2 0.0 1.0 CG A:HIS22 4.2 0.0 1.0 C3B A:HEC108 4.2 0.0 1.0 C2B A:HEC108 4.2 0.0 1.0 C2C A:HEC108 4.3 0.0 1.0 C3C A:HEC108 4.3 0.0 1.0 C3A A:HEC108 4.3 0.0 1.0 HE2 A:TYR43 4.3 0.0 1.0 C2A A:HEC108 4.3 0.0 1.0 HD2 A:TYR43 4.3 0.0 1.0 C2D A:HEC108 4.3 0.0 1.0 C3D A:HEC108 4.3 0.0 1.0 HHC A:HEC108 4.5 0.0 1.0 HHB A:HEC108 4.5 0.0 1.0 HHD A:HEC108 4.6 0.0 1.0 HHA A:HEC108 4.6 0.0 1.0 CZ A:PHE20 4.6 0.0 1.0 CE1 A:PHE20 4.7 0.0 1.0 CE2 A:TYR43 4.8 0.0 1.0 CD2 A:TYR43 4.8 0.0 1.0 HB3 A:CYS33 4.8 0.0 1.0 HD23 A:LEU9 4.9 0.0 1.0 HD2 A:PRO5 4.9 0.0 1.0 HB2 A:CYS33 5.0 0.0 1.0 HD1 A:HIS34 5.0 0.0 1.0

Iron binding site 2 out of 4 in the Solution Structure of Desulfovibrio Vulgaris (Hildenborough) Ferricytochrome C3, uc(Nmr), 20 Structures


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Solution Structure of Desulfovibrio Vulgaris (Hildenborough) Ferricytochrome C3, uc(Nmr), 20 Structures within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe109 b:0.0 occ:1.00 FE A:HEC109 0.0 0.0 1.0 NE2 A:HIS52 1.9 0.0 1.0 NB A:HEC109 1.9 0.0 1.0 NC A:HEC109 2.0 0.0 1.0 NE2 A:HIS35 2.0 0.0 1.0 NA A:HEC109 2.1 0.0 1.0 ND A:HEC109 2.1 0.0 1.0 CD2 A:HIS52 2.9 0.0 1.0 CE1 A:HIS52 3.0 0.0 1.0 C4B A:HEC109 3.0 0.0 1.0 C1C A:HEC109 3.0 0.0 1.0 C1B A:HEC109 3.0 0.0 1.0 CE1 A:HIS35 3.0 0.0 1.0 CD2 A:HIS35 3.0 0.0 1.0 C4C A:HEC109 3.1 0.0 1.0 C4A A:HEC109 3.1 0.0 1.0 C1A A:HEC109 3.1 0.0 1.0 C1D A:HEC109 3.1 0.0 1.0 C4D A:HEC109 3.1 0.0 1.0 HD2 A:HIS52 3.2 0.0 1.0 HE1 A:HIS52 3.2 0.0 1.0 HE1 A:HIS35 3.3 0.0 1.0 HD2 A:HIS35 3.3 0.0 1.0 CHC A:HEC109 3.4 0.0 1.0 CHB A:HEC109 3.4 0.0 1.0 CHD A:HEC109 3.5 0.0 1.0 CHA A:HEC109 3.5 0.0 1.0 HG13 A:VAL68 4.1 0.0 1.0 ND1 A:HIS52 4.1 0.0 1.0 CG A:HIS52 4.1 0.0 1.0 HD2 A:PHE76 4.1 0.0 1.0 ND1 A:HIS35 4.2 0.0 1.0 CG A:HIS35 4.2 0.0 1.0 C3B A:HEC109 4.2 0.0 1.0 C2B A:HEC109 4.2 0.0 1.0 C2C A:HEC109 4.2 0.0 1.0 C3C A:HEC109 4.3 0.0 1.0 C3A A:HEC109 4.3 0.0 1.0 C2A A:HEC109 4.3 0.0 1.0 C2D A:HEC109 4.4 0.0 1.0 C3D A:HEC109 4.4 0.0 1.0 HB A:VAL68 4.4 0.0 1.0 HE2 A:PHE76 4.4 0.0 1.0 HHC A:HEC109 4.5 0.0 1.0 HHB A:HEC109 4.5 0.0 1.0 HHD A:HEC109 4.6 0.0 1.0 HHA A:HEC109 4.6 0.0 1.0 HG22 A:VAL68 4.6 0.0 1.0 HB3 A:CYS51 4.8 0.0 1.0 CG1 A:VAL68 4.9 0.0 1.0 CD2 A:PHE76 4.9 0.0 1.0 HG12 A:VAL68 5.0 0.0 1.0

Iron binding site 3 out of 4 in the Solution Structure of Desulfovibrio Vulgaris (Hildenborough) Ferricytochrome C3, uc(Nmr), 20 Structures


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Solution Structure of Desulfovibrio Vulgaris (Hildenborough) Ferricytochrome C3, uc(Nmr), 20 Structures within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe110 b:0.0 occ:1.00 FE A:HEC110 0.0 0.0 1.0 NC A:HEC110 1.9 0.0 1.0 NE2 A:HIS83 1.9 0.0 1.0 NE2 A:HIS25 2.0 0.0 1.0 NB A:HEC110 2.0 0.0 1.0 ND A:HEC110 2.0 0.0 1.0 NA A:HEC110 2.1 0.0 1.0 C1C A:HEC110 2.9 0.0 1.0 CD2 A:HIS83 2.9 0.0 1.0 C4C A:HEC110 3.0 0.0 1.0 CE1 A:HIS83 3.0 0.0 1.0 C4B A:HEC110 3.0 0.0 1.0 CE1 A:HIS25 3.0 0.0 1.0 C1D A:HEC110 3.0 0.0 1.0 CD2 A:HIS25 3.0 0.0 1.0 C1B A:HEC110 3.1 0.0 1.0 C4D A:HEC110 3.1 0.0 1.0 C4A A:HEC110 3.2 0.0 1.0 C1A A:HEC110 3.2 0.0 1.0 HD2 A:HIS83 3.2 0.0 1.0 HE1 A:HIS25 3.3 0.0 1.0 HE1 A:HIS83 3.3 0.0 1.0 HD2 A:HIS25 3.3 0.0 1.0 CHC A:HEC110 3.4 0.0 1.0 CHD A:HEC110 3.4 0.0 1.0 CHB A:HEC110 3.5 0.0 1.0 CHA A:HEC110 3.6 0.0 1.0 ND1 A:HIS83 4.1 0.0 1.0 CG A:HIS83 4.1 0.0 1.0 C2C A:HEC110 4.2 0.0 1.0 ND1 A:HIS25 4.2 0.0 1.0 C3C A:HEC110 4.2 0.0 1.0 HBC1 A:HEC111 4.2 0.0 1.0 CG A:HIS25 4.2 0.0 1.0 C3B A:HEC110 4.3 0.0 1.0 C2D A:HEC110 4.3 0.0 1.0 C2B A:HEC110 4.3 0.0 1.0 C3D A:HEC110 4.3 0.0 1.0 C3A A:HEC110 4.4 0.0 1.0 C2A A:HEC110 4.4 0.0 1.0 HHC A:HEC110 4.5 0.0 1.0 HHD A:HEC110 4.5 0.0 1.0 HHB A:HEC110 4.6 0.0 1.0 HHA A:HEC110 4.6 0.0 1.0 O A:CYS79 4.9 0.0 1.0

Iron binding site 4 out of 4 in the Solution Structure of Desulfovibrio Vulgaris (Hildenborough) Ferricytochrome C3, uc(Nmr), 20 Structures


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Solution Structure of Desulfovibrio Vulgaris (Hildenborough) Ferricytochrome C3, uc(Nmr), 20 Structures within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe111 b:0.0 occ:1.00 FE A:HEC111 0.0 0.0 1.0 NE2 A:HIS106 1.9 0.0 1.0 NB A:HEC111 2.0 0.0 1.0 NE2 A:HIS70 2.0 0.0 1.0 NC A:HEC111 2.0 0.0 1.0 ND A:HEC111 2.1 0.0 1.0 NA A:HEC111 2.1 0.0 1.0 CE1 A:HIS106 2.9 0.0 1.0 CD2 A:HIS106 2.9 0.0 1.0 C4B A:HEC111 3.0 0.0 1.0 CE1 A:HIS70 3.0 0.0 1.0 C1C A:HEC111 3.0 0.0 1.0 C1B A:HEC111 3.0 0.0 1.0 CD2 A:HIS70 3.0 0.0 1.0 C4C A:HEC111 3.0 0.0 1.0 C1D A:HEC111 3.1 0.0 1.0 C4A A:HEC111 3.1 0.0 1.0 C4D A:HEC111 3.1 0.0 1.0 C1A A:HEC111 3.1 0.0 1.0 HE2 A:TYR66 3.1 0.0 1.0 HE1 A:HIS106 3.2 0.0 1.0 HD2 A:HIS106 3.2 0.0 1.0 HE1 A:HIS70 3.3 0.0 1.0 HD2 A:HIS70 3.3 0.0 1.0 CHC A:HEC111 3.4 0.0 1.0 CHD A:HEC111 3.4 0.0 1.0 CHB A:HEC111 3.5 0.0 1.0 CHA A:HEC111 3.5 0.0 1.0 HD2 A:TYR66 3.8 0.0 1.0 CE2 A:TYR66 4.0 0.0 1.0 ND1 A:HIS106 4.0 0.0 1.0 CG A:HIS106 4.1 0.0 1.0 ND1 A:HIS70 4.2 0.0 1.0 CG A:HIS70 4.2 0.0 1.0 C3B A:HEC111 4.2 0.0 1.0 C2B A:HEC111 4.3 0.0 1.0 C2C A:HEC111 4.3 0.0 1.0 C3C A:HEC111 4.3 0.0 1.0 CD2 A:TYR66 4.3 0.0 1.0 C2D A:HEC111 4.3 0.0 1.0 C3D A:HEC111 4.3 0.0 1.0 C3A A:HEC111 4.3 0.0 1.0 C2A A:HEC111 4.3 0.0 1.0 HHC A:HEC111 4.5 0.0 1.0 HG23 A:VAL18 4.5 0.0 1.0 HHD A:HEC111 4.5 0.0 1.0 HHB A:HEC111 4.5 0.0 1.0 HHA A:HEC111 4.6 0.0 1.0 HG22 A:VAL80 4.9 0.0 1.0 HD1 A:HIS106 5.0 0.0 1.0 HB3 A:CYS105 5.0 0.0 1.0

A.C.Messias, A.P.Aguiar, L.Brennan, C.A.Salgueiro, L.M.Saraiva, A.V.Xavier, D.L.Turner. Solution Structures of Tetrahaem Ferricytochrome C(3) From Desulfovibrio Vulgaris (Hildenborough) and Its K45Q Mutant: the Molecular Basis of Cooperativity. Biochim.Biophys.Acta V.1757 143 2006.
ISSN: ISSN 0006-3002
PubMed: 16527248
DOI: 10.1016/J.BBABIO.2006.01.007