Iron in PDB 2cy3: Crystal Structure of Cytochrome C3 From Desulfovibrio Desulfuricans Norway at 1.7 Angstroms Resolution

The structure of Crystal Structure of Cytochrome C3 From Desulfovibrio Desulfuricans Norway at 1.7 Angstroms Resolution, PDB code: 2cy3 was solved by M.Czjzek, F.Payan, R.Haser, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.70
Space group	P 31
Cell size a, b, c (Å), α, β, γ (°)	43.720, 43.720, 64.450, 90.00, 90.00, 120.00
R / Rfree (%)	19.8 / n/a

The binding sites of Iron atom in the Crystal Structure of Cytochrome C3 From Desulfovibrio Desulfuricans Norway at 1.7 Angstroms Resolution (pdb code 2cy3). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of Cytochrome C3 From Desulfovibrio Desulfuricans Norway at 1.7 Angstroms Resolution, PDB code: 2cy3:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Crystal Structure of Cytochrome C3 From Desulfovibrio Desulfuricans Norway at 1.7 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Cytochrome C3 From Desulfovibrio Desulfuricans Norway at 1.7 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe119 b:3.1 occ:1.00 FE A:HEM119 0.0 3.1 1.0 NB A:HEM119 2.0 3.1 1.0 NA A:HEM119 2.0 2.5 1.0 NC A:HEM119 2.0 2.1 1.0 ND A:HEM119 2.0 2.8 1.0 NE2 A:HIS48 2.0 2.8 1.0 NE2 A:HIS36 2.0 3.0 1.0 CE1 A:HIS48 3.0 2.7 1.0 C1B A:HEM119 3.0 2.5 1.0 C4A A:HEM119 3.0 2.4 1.0 CE1 A:HIS36 3.0 3.4 1.0 C1D A:HEM119 3.0 2.1 1.0 C4C A:HEM119 3.0 2.0 1.0 C4B A:HEM119 3.0 2.0 1.0 C1C A:HEM119 3.0 2.2 1.0 C1A A:HEM119 3.0 2.8 1.0 C4D A:HEM119 3.1 3.1 1.0 CD2 A:HIS48 3.1 3.6 1.0 CD2 A:HIS36 3.1 3.3 1.0 CHB A:HEM119 3.3 2.0 1.0 CHD A:HEM119 3.4 2.0 1.0 CHC A:HEM119 3.4 2.0 1.0 CHA A:HEM119 3.4 2.0 1.0 ND1 A:HIS48 4.1 2.0 1.0 ND1 A:HIS36 4.2 5.4 1.0 CG A:HIS48 4.2 2.9 1.0 CG A:HIS36 4.2 4.8 1.0 C3A A:HEM119 4.3 4.0 1.0 C2B A:HEM119 4.3 4.0 1.0 C3C A:HEM119 4.3 2.5 1.0 C2D A:HEM119 4.3 4.5 1.0 C3B A:HEM119 4.3 2.8 1.0 C2A A:HEM119 4.3 3.0 1.0 C2C A:HEM119 4.3 2.2 1.0 C3D A:HEM119 4.3 4.7 1.0 CE2 A:PHE34 4.6 2.6 1.0

Iron binding site 2 out of 4 in the Crystal Structure of Cytochrome C3 From Desulfovibrio Desulfuricans Norway at 1.7 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Cytochrome C3 From Desulfovibrio Desulfuricans Norway at 1.7 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe120 b:6.2 occ:1.00 FE A:HEM120 0.0 6.2 1.0 NA A:HEM120 1.9 6.7 1.0 NB A:HEM120 2.0 5.2 1.0 NC A:HEM120 2.0 6.8 1.0 NE2 A:HIS67 2.0 7.2 1.0 NE2 A:HIS49 2.0 5.8 1.0 ND A:HEM120 2.0 8.3 1.0 CE1 A:HIS67 2.9 7.0 1.0 CE1 A:HIS49 2.9 5.0 1.0 C4A A:HEM120 3.0 6.5 1.0 C1B A:HEM120 3.0 5.9 1.0 C4B A:HEM120 3.0 4.8 1.0 C1A A:HEM120 3.0 8.0 1.0 C1C A:HEM120 3.0 5.8 1.0 C4C A:HEM120 3.0 7.0 1.0 C4D A:HEM120 3.1 10.0 1.0 C1D A:HEM120 3.1 9.2 1.0 CD2 A:HIS67 3.1 5.0 1.0 CD2 A:HIS49 3.2 4.0 1.0 CHB A:HEM120 3.3 3.7 1.0 CHC A:HEM120 3.4 4.0 1.0 CHA A:HEM120 3.4 8.3 1.0 CHD A:HEM120 3.4 6.8 1.0 ND1 A:HIS67 4.1 6.1 1.0 ND1 A:HIS49 4.1 5.3 1.0 CG A:HIS67 4.2 7.6 1.0 C3A A:HEM120 4.2 7.3 1.0 CG A:HIS49 4.2 3.1 1.0 C2A A:HEM120 4.2 9.5 1.0 C3B A:HEM120 4.2 4.5 1.0 C2B A:HEM120 4.3 4.7 1.0 C2C A:HEM120 4.3 6.4 1.0 C3C A:HEM120 4.3 8.2 1.0 C2D A:HEM120 4.3 12.2 1.0 C3D A:HEM120 4.3 12.3 1.0 O A:HOH277 4.8 16.0 0.8

Iron binding site 3 out of 4 in the Crystal Structure of Cytochrome C3 From Desulfovibrio Desulfuricans Norway at 1.7 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Cytochrome C3 From Desulfovibrio Desulfuricans Norway at 1.7 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe121 b:4.5 occ:1.00 FE A:HEM121 0.0 4.5 1.0 NC A:HEM121 2.0 4.6 1.0 NE2 A:HIS39 2.0 5.5 1.0 ND A:HEM121 2.0 6.7 1.0 NB A:HEM121 2.0 4.1 1.0 NA A:HEM121 2.0 4.9 1.0 NE2 A:HIS96 2.0 5.6 1.0 CE1 A:HIS96 2.9 5.2 1.0 CD2 A:HIS39 3.0 3.8 1.0 CE1 A:HIS39 3.0 5.4 1.0 C1C A:HEM121 3.0 4.1 1.0 C4B A:HEM121 3.0 3.6 1.0 C4C A:HEM121 3.0 4.9 1.0 C1D A:HEM121 3.0 4.9 1.0 C4D A:HEM121 3.0 5.2 1.0 C1A A:HEM121 3.0 6.5 1.0 C1B A:HEM121 3.0 3.8 1.0 C4A A:HEM121 3.1 6.8 1.0 CD2 A:HIS96 3.2 6.7 1.0 CHC A:HEM121 3.3 3.9 1.0 CHD A:HEM121 3.4 4.4 1.0 CHA A:HEM121 3.4 5.6 1.0 CHB A:HEM121 3.4 3.5 1.0 ND1 A:HIS39 4.1 6.2 1.0 ND1 A:HIS96 4.1 4.2 1.0 CG A:HIS39 4.1 6.0 1.0 CG A:HIS96 4.2 5.2 1.0 C2C A:HEM121 4.2 5.8 1.0 C3C A:HEM121 4.2 5.4 1.0 C3B A:HEM121 4.3 3.5 1.0 C2D A:HEM121 4.3 7.0 1.0 C3D A:HEM121 4.3 7.1 1.0 C2A A:HEM121 4.3 8.7 1.0 C2B A:HEM121 4.3 2.9 1.0 C3A A:HEM121 4.3 7.9 1.0 CA A:GLY107 4.6 9.3 1.0 N A:GLY107 4.9 8.7 1.0 CE1 A:PHE34 4.9 4.1 1.0 O A:HOH321 5.0 24.9 0.9

Iron binding site 4 out of 4 in the Crystal Structure of Cytochrome C3 From Desulfovibrio Desulfuricans Norway at 1.7 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Cytochrome C3 From Desulfovibrio Desulfuricans Norway at 1.7 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe122 b:4.9 occ:1.00 FE A:HEM122 0.0 4.9 1.0 NC A:HEM122 1.9 3.7 1.0 NA A:HEM122 2.0 5.0 1.0 NB A:HEM122 2.0 4.3 1.0 NE2 A:HIS89 2.0 6.4 1.0 ND A:HEM122 2.0 4.7 1.0 NE2 A:HIS115 2.0 5.8 1.0 CE1 A:HIS115 2.9 4.7 1.0 C4C A:HEM122 3.0 4.1 1.0 C4A A:HEM122 3.0 5.4 1.0 C1C A:HEM122 3.0 4.7 1.0 C4B A:HEM122 3.0 4.5 1.0 CE1 A:HIS89 3.0 6.4 1.0 C1A A:HEM122 3.0 5.6 1.0 C1B A:HEM122 3.0 5.0 1.0 C1D A:HEM122 3.0 2.5 1.0 CD2 A:HIS89 3.0 5.5 1.0 C4D A:HEM122 3.1 5.0 1.0 CD2 A:HIS115 3.2 4.9 1.0 CHD A:HEM122 3.4 3.1 1.0 CHC A:HEM122 3.4 4.3 1.0 CHB A:HEM122 3.4 4.6 1.0 CHA A:HEM122 3.4 4.7 1.0 ND1 A:HIS115 4.1 6.9 1.0 ND1 A:HIS89 4.1 6.0 1.0 CG A:HIS89 4.2 5.4 1.0 C3C A:HEM122 4.2 4.3 1.0 C3A A:HEM122 4.2 5.8 1.0 C3B A:HEM122 4.3 6.1 1.0 C2C A:HEM122 4.3 4.9 1.0 CG A:HIS115 4.3 7.1 1.0 C2A A:HEM122 4.3 6.2 1.0 C2D A:HEM122 4.3 4.9 1.0 C2B A:HEM122 4.3 5.9 1.0 C3D A:HEM122 4.3 5.5 1.0

M.Czjzek, F.Payan, F.Guerlesquin, M.Bruschi, R.Haser. Crystal Structure of Cytochrome C3 From Desulfovibrio Desulfuricans Norway at 1.7 A Resolution. J.Mol.Biol. V. 243 653 1994.
ISSN: ISSN 0022-2836
PubMed: 7966289
DOI: 10.1016/0022-2836(94)90039-6